data_A1AHM # _chem_comp.id A1AHM _chem_comp.name "7-[5-S-(4-{[(2-tert-butylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H38 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-08 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AHM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AY9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AHM C16 C1 C 0 1 Y N N N N N 33.763 3.687 47.828 -9.101 -1.397 -0.269 C16 A1AHM 1 A1AHM C18 C2 C 0 1 Y N N N N N 42.441 11.994 55.030 6.789 0.674 -0.372 C18 A1AHM 2 A1AHM C8 C3 C 0 1 Y N N N N N 33.602 4.791 46.996 -8.374 -0.224 -0.402 C8 A1AHM 3 A1AHM C21 C4 C 0 1 Y N N N N N 43.057 10.863 55.590 6.981 2.000 0.058 C21 A1AHM 4 A1AHM C25 C5 C 0 1 N N R N N N 41.557 12.567 51.456 5.280 -1.992 0.845 C25 A1AHM 5 A1AHM C24 C6 C 0 1 Y N N N N N 42.310 10.337 53.545 4.896 1.358 0.618 C24 A1AHM 6 A1AHM C23 C7 C 0 1 N N N N N N 43.458 8.392 54.704 5.433 3.749 1.315 C23 A1AHM 7 A1AHM C22 C8 C 0 1 Y N N N N N 42.959 9.804 54.605 5.731 2.408 0.695 C22 A1AHM 8 A1AHM C19 C9 C 0 1 Y N N N N N 42.871 13.224 56.831 8.936 0.670 -1.200 C19 A1AHM 9 A1AHM C20 C10 C 0 1 Y N N N N N 43.584 11.024 56.898 8.219 2.614 -0.185 C20 A1AHM 10 A1AHM C7 C11 C 0 1 N N N N N N 33.921 6.169 47.530 -7.071 -0.216 -1.160 C7 A1AHM 11 A1AHM C6 C12 C 0 1 N N N N N N 35.755 7.706 47.927 -4.698 -0.660 -0.978 C6 A1AHM 12 A1AHM C1 C13 C 0 1 N N S N N N 39.482 11.449 51.634 3.008 -2.246 0.004 C1 A1AHM 13 A1AHM O2 O1 O 0 1 N N N N N N 42.200 13.801 51.162 6.372 -2.819 0.440 O2 A1AHM 14 A1AHM C5 C14 C 0 1 N N N N N N 36.989 7.882 48.767 -3.605 -1.179 -0.042 C5 A1AHM 15 A1AHM C4 C15 C 0 1 N N N N N N 37.874 9.019 48.316 -2.254 -1.129 -0.759 C4 A1AHM 16 A1AHM C13 C16 C 0 1 N N N N N N 34.209 6.326 44.241 -8.740 3.314 0.868 C13 A1AHM 17 A1AHM C10 C17 C 0 1 N N N N N N 32.873 5.630 44.561 -8.074 2.217 0.034 C10 A1AHM 18 A1AHM C3 C18 C 0 1 N N N N N N 39.165 9.079 49.105 -1.161 -1.648 0.177 C3 A1AHM 19 A1AHM C11 C19 C 0 1 N N N N N N 31.844 6.676 45.009 -6.645 1.994 0.534 C11 A1AHM 20 A1AHM C C20 C 0 1 N N S N N N 40.210 12.433 50.732 3.999 -2.835 1.033 C A1AHM 21 A1AHM O O2 O 0 1 N N N N N N 39.468 13.652 50.675 4.259 -4.210 0.748 O A1AHM 22 A1AHM C17 C21 C 0 1 N N R N N N 41.120 12.486 52.934 4.912 -0.993 -0.275 C17 A1AHM 23 A1AHM N2 N1 N 0 1 Y N N N N N 41.966 11.653 53.789 5.519 0.314 -0.013 N2 A1AHM 24 A1AHM N5 N2 N 0 1 N N N N N N 44.186 10.039 57.577 8.457 3.916 0.218 N5 A1AHM 25 A1AHM N4 N3 N 0 1 Y N N N N N 43.467 12.232 57.496 9.159 1.913 -0.813 N4 A1AHM 26 A1AHM N3 N4 N 0 1 Y N N N N N 42.333 13.201 55.610 7.792 0.055 -0.993 N3 A1AHM 27 A1AHM O1 O3 O 0 1 N N N N N N 39.810 11.935 52.949 3.472 -0.897 -0.225 O1 A1AHM 28 A1AHM C2 C22 C 0 1 N N N N N N 40.071 10.050 51.573 1.589 -2.232 0.576 C2 A1AHM 29 A1AHM S S1 S 0 1 N N N N N N 38.883 8.919 50.885 0.441 -1.589 -0.672 S A1AHM 30 A1AHM N N5 N 0 1 N N N N N N 35.301 6.320 47.981 -5.995 -0.708 -0.290 N A1AHM 31 A1AHM C15 C23 C 0 1 Y N N N N N 33.384 2.425 47.395 -10.297 -1.356 0.432 C15 A1AHM 32 A1AHM C14 C24 C 0 1 Y N N N N N 32.847 2.286 46.125 -10.719 -0.157 0.975 C14 A1AHM 33 A1AHM N1 N6 N 0 1 Y N N N N N 32.676 3.308 45.264 -9.998 0.939 0.832 N1 A1AHM 34 A1AHM C9 C25 C 0 1 Y N N N N N 33.044 4.540 45.638 -8.859 0.938 0.168 C9 A1AHM 35 A1AHM C12 C26 C 0 1 N N N N N N 32.367 5.029 43.248 -8.040 2.643 -1.435 C12 A1AHM 36 A1AHM H1 H1 H 0 1 N N N N N N 34.185 3.813 48.814 -8.747 -2.319 -0.704 H1 A1AHM 37 A1AHM H2 H2 H 0 1 N N N N N N 42.200 11.709 51.211 5.526 -1.460 1.765 H2 A1AHM 38 A1AHM H3 H3 H 0 1 N N N N N N 42.090 9.806 52.631 3.885 1.340 0.998 H3 A1AHM 39 A1AHM H4 H4 H 0 1 N N N N N N 44.488 8.339 54.321 5.707 3.731 2.370 H4 A1AHM 40 A1AHM H5 H5 H 0 1 N N N N N N 43.441 8.070 55.756 6.008 4.521 0.803 H5 A1AHM 41 A1AHM H6 H6 H 0 1 N N N N N N 42.811 7.732 54.108 4.369 3.966 1.219 H6 A1AHM 42 A1AHM H7 H7 H 0 1 N N N N N N 42.817 14.170 57.349 9.726 0.136 -1.707 H7 A1AHM 43 A1AHM H8 H8 H 0 1 N N N N N N 33.735 6.902 46.732 -7.156 -0.862 -2.034 H8 A1AHM 44 A1AHM H9 H9 H 0 1 N N N N N N 33.254 6.375 48.380 -6.844 0.801 -1.480 H9 A1AHM 45 A1AHM H10 H10 H 0 1 N N N N N N 35.984 7.973 46.885 -4.476 0.368 -1.262 H10 A1AHM 46 A1AHM H11 H11 H 0 1 N N N N N N 34.960 8.364 48.308 -4.738 -1.283 -1.872 H11 A1AHM 47 A1AHM H12 H12 H 0 1 N N N N N N 38.400 11.443 51.437 3.038 -2.820 -0.922 H12 A1AHM 48 A1AHM H13 H13 H 0 1 N N N N N N 43.027 13.846 51.627 6.645 -3.465 1.106 H13 A1AHM 49 A1AHM H14 H14 H 0 1 N N N N N N 36.678 8.075 49.804 -3.566 -0.556 0.851 H14 A1AHM 50 A1AHM H15 H15 H 0 1 N N N N N N 37.573 6.951 48.726 -3.828 -2.208 0.242 H15 A1AHM 51 A1AHM H16 H16 H 0 1 N N N N N N 38.114 8.882 47.251 -2.293 -1.752 -1.652 H16 A1AHM 52 A1AHM H17 H17 H 0 1 N N N N N N 37.331 9.966 48.450 -2.031 -0.101 -1.043 H17 A1AHM 53 A1AHM H18 H18 H 0 1 N N N N N N 34.617 6.777 45.158 -8.172 4.239 0.771 H18 A1AHM 54 A1AHM H19 H19 H 0 1 N N N N N N 34.922 5.587 43.847 -9.758 3.473 0.512 H19 A1AHM 55 A1AHM H20 H20 H 0 1 N N N N N N 34.042 7.111 43.489 -8.764 3.010 1.914 H20 A1AHM 56 A1AHM H21 H21 H 0 1 N N N N N N 39.821 8.260 48.775 -1.121 -1.025 1.071 H21 A1AHM 57 A1AHM H22 H22 H 0 1 N N N N N N 39.656 10.044 48.909 -1.383 -2.677 0.461 H22 A1AHM 58 A1AHM H23 H23 H 0 1 N N N N N N 32.173 7.133 45.954 -6.673 1.618 1.557 H23 A1AHM 59 A1AHM H24 H24 H 0 1 N N N N N N 31.753 7.455 44.237 -6.146 1.267 -0.106 H24 A1AHM 60 A1AHM H25 H25 H 0 1 N N N N N N 30.868 6.190 45.157 -6.099 2.937 0.508 H25 A1AHM 61 A1AHM H26 H26 H 0 1 N N N N N N 40.358 11.999 49.732 3.612 -2.720 2.046 H26 A1AHM 62 A1AHM H27 H27 H 0 1 N N N N N N 38.649 13.504 50.217 4.920 -4.614 1.327 H27 A1AHM 63 A1AHM H28 H28 H 0 1 N N N N N N 41.096 13.509 53.339 5.233 -1.375 -1.244 H28 A1AHM 64 A1AHM H29 H29 H 0 1 N N N N N N 44.470 10.377 58.474 7.763 4.416 0.676 H29 A1AHM 65 A1AHM H30 H30 H 0 1 N N N N N N 43.549 9.277 57.695 9.317 4.328 0.044 H30 A1AHM 66 A1AHM H31 H31 H 0 1 N N N N N N 40.339 9.723 52.588 1.298 -3.246 0.850 H31 A1AHM 67 A1AHM H32 H32 H 0 1 N N N N N N 40.972 10.061 50.941 1.560 -1.594 1.460 H32 A1AHM 68 A1AHM H33 H33 H 0 1 N N N N N N 35.368 5.997 48.925 -5.965 -0.190 0.576 H33 A1AHM 69 A1AHM H35 H35 H 0 1 N N N N N N 33.505 1.565 48.037 -10.892 -2.249 0.551 H35 A1AHM 70 A1AHM H36 H36 H 0 1 N N N N N N 32.547 1.299 45.806 -11.649 -0.116 1.522 H36 A1AHM 71 A1AHM H37 H37 H 0 1 N N N N N N 31.409 4.517 43.423 -7.233 3.361 -1.586 H37 A1AHM 72 A1AHM H38 H38 H 0 1 N N N N N N 32.224 5.831 42.509 -7.870 1.768 -2.063 H38 A1AHM 73 A1AHM H39 H39 H 0 1 N N N N N N 33.104 4.307 42.867 -8.991 3.103 -1.702 H39 A1AHM 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AHM C12 C10 SING N N 1 A1AHM C13 C10 SING N N 2 A1AHM C10 C11 SING N N 3 A1AHM C10 C9 SING N N 4 A1AHM N1 C9 DOUB Y N 5 A1AHM N1 C14 SING Y N 6 A1AHM C9 C8 SING Y N 7 A1AHM C14 C15 DOUB Y N 8 A1AHM C8 C7 SING N N 9 A1AHM C8 C16 DOUB Y N 10 A1AHM C15 C16 SING Y N 11 A1AHM C7 N SING N N 12 A1AHM C6 N SING N N 13 A1AHM C6 C5 SING N N 14 A1AHM C4 C5 SING N N 15 A1AHM C4 C3 SING N N 16 A1AHM C3 S SING N N 17 A1AHM O C SING N N 18 A1AHM C C25 SING N N 19 A1AHM C C1 SING N N 20 A1AHM S C2 SING N N 21 A1AHM O2 C25 SING N N 22 A1AHM C25 C17 SING N N 23 A1AHM C2 C1 SING N N 24 A1AHM C1 O1 SING N N 25 A1AHM C17 O1 SING N N 26 A1AHM C17 N2 SING N N 27 A1AHM C24 N2 SING Y N 28 A1AHM C24 C22 DOUB Y N 29 A1AHM N2 C18 SING Y N 30 A1AHM C22 C23 SING N N 31 A1AHM C22 C21 SING Y N 32 A1AHM C18 C21 DOUB Y N 33 A1AHM C18 N3 SING Y N 34 A1AHM C21 C20 SING Y N 35 A1AHM N3 C19 DOUB Y N 36 A1AHM C19 N4 SING Y N 37 A1AHM C20 N4 DOUB Y N 38 A1AHM C20 N5 SING N N 39 A1AHM C16 H1 SING N N 40 A1AHM C25 H2 SING N N 41 A1AHM C24 H3 SING N N 42 A1AHM C23 H4 SING N N 43 A1AHM C23 H5 SING N N 44 A1AHM C23 H6 SING N N 45 A1AHM C19 H7 SING N N 46 A1AHM C7 H8 SING N N 47 A1AHM C7 H9 SING N N 48 A1AHM C6 H10 SING N N 49 A1AHM C6 H11 SING N N 50 A1AHM C1 H12 SING N N 51 A1AHM O2 H13 SING N N 52 A1AHM C5 H14 SING N N 53 A1AHM C5 H15 SING N N 54 A1AHM C4 H16 SING N N 55 A1AHM C4 H17 SING N N 56 A1AHM C13 H18 SING N N 57 A1AHM C13 H19 SING N N 58 A1AHM C13 H20 SING N N 59 A1AHM C3 H21 SING N N 60 A1AHM C3 H22 SING N N 61 A1AHM C11 H23 SING N N 62 A1AHM C11 H24 SING N N 63 A1AHM C11 H25 SING N N 64 A1AHM C H26 SING N N 65 A1AHM O H27 SING N N 66 A1AHM C17 H28 SING N N 67 A1AHM N5 H29 SING N N 68 A1AHM N5 H30 SING N N 69 A1AHM C2 H31 SING N N 70 A1AHM C2 H32 SING N N 71 A1AHM N H33 SING N N 72 A1AHM C15 H35 SING N N 73 A1AHM C14 H36 SING N N 74 A1AHM C12 H37 SING N N 75 A1AHM C12 H38 SING N N 76 A1AHM C12 H39 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AHM SMILES ACDLabs 12.01 "CC(C)(C)c1ncccc1CNCCCCSCC1OC(n2cc(C)c3c(N)ncnc32)C(O)C1O" A1AHM InChI InChI 1.06 "InChI=1S/C26H38N6O3S/c1-16-13-32(24-19(16)23(27)30-15-31-24)25-21(34)20(33)18(35-25)14-36-11-6-5-9-28-12-17-8-7-10-29-22(17)26(2,3)4/h7-8,10,13,15,18,20-21,25,28,33-34H,5-6,9,11-12,14H2,1-4H3,(H2,27,30,31)/t18-,20-,21-,25-/m1/s1" A1AHM InChIKey InChI 1.06 PLCITURFVJNAFH-GUQHISFFSA-N A1AHM SMILES_CANONICAL CACTVS 3.385 "Cc1cn([C@@H]2O[C@H](CSCCCCNCc3cccnc3C(C)(C)C)[C@@H](O)[C@H]2O)c4ncnc(N)c14" A1AHM SMILES CACTVS 3.385 "Cc1cn([CH]2O[CH](CSCCCCNCc3cccnc3C(C)(C)C)[CH](O)[CH]2O)c4ncnc(N)c14" A1AHM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCCCCNCc4cccnc4C(C)(C)C)O)O" A1AHM SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cn(c2c1c(ncn2)N)C3C(C(C(O3)CSCCCCNCc4cccnc4C(C)(C)C)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AHM "SYSTEMATIC NAME" ACDLabs 12.01 "7-[5-S-(4-{[(2-tert-butylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine" A1AHM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{S})-2-(4-azanyl-5-methyl-pyrrolo[2,3-d]pyrimidin-7-yl)-5-[4-[(2-~{tert}-butylpyridin-3-yl)methylamino]butylsulfanylmethyl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AHM "Create component" 2024-03-08 RCSB A1AHM "Initial release" 2024-12-04 RCSB #