data_A1AID # _chem_comp.id A1AID _chem_comp.name "(1M,9M)-1-{4-[4-(prop-2-enoyl)piperazin-1-yl]-3-(trifluoromethyl)phenyl}-9-(quinolin-3-yl)benzo[h][1,6]naphthyridin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H26 F3 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-15 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.608 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AID _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9B09 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AID C41 C1 C 0 1 Y N N N N N 171.954 208.659 188.390 -3.934 -4.336 -0.029 C41 A1AID 1 A1AID C43 C2 C 0 1 Y N N N N N 171.893 208.754 185.966 -2.078 -2.910 0.472 C43 A1AID 2 A1AID C42 C3 C 0 1 Y N N N N N 172.385 209.236 187.199 -3.461 -3.161 0.468 C42 A1AID 3 A1AID N21 N1 N 0 1 N N N N N N 170.556 210.241 178.700 3.492 1.870 0.178 N21 A1AID 4 A1AID C11 C4 C 0 1 N N N N N N 173.060 214.448 182.958 -2.547 0.818 1.382 C11 A1AID 5 A1AID C10 C5 C 0 1 N N N N N N 172.030 215.418 183.554 -4.020 0.405 1.288 C10 A1AID 6 A1AID C05 C6 C 0 1 N N N N N N 173.566 218.292 185.688 -7.681 3.531 0.494 C05 A1AID 7 A1AID C06 C7 C 0 1 N N N N N N 172.562 217.432 185.876 -6.627 2.870 0.023 C06 A1AID 8 A1AID C07 C8 C 0 1 N N N N N N 171.986 216.012 186.114 -5.865 1.975 0.908 C07 A1AID 9 A1AID C13 C9 C 0 1 N N N N N N 172.189 212.696 184.499 -2.693 2.100 -0.672 C13 A1AID 10 A1AID C14 C10 C 0 1 N N N N N N 171.215 213.738 185.066 -4.172 1.740 -0.850 C14 A1AID 11 A1AID C15 C11 C 0 1 Y N N N N N 172.185 212.331 182.060 -0.626 1.223 0.066 C15 A1AID 12 A1AID C16 C12 C 0 1 Y N N N N N 173.016 211.608 181.202 0.152 0.938 -1.048 C16 A1AID 13 A1AID C17 C13 C 0 1 Y N N N N N 172.474 210.932 180.112 1.515 1.152 -1.011 C17 A1AID 14 A1AID C18 C14 C 0 1 Y N N N N N 171.101 210.972 179.877 2.109 1.653 0.141 C18 A1AID 15 A1AID C19 C15 C 0 1 Y N N N N N 170.268 211.700 180.730 1.330 1.938 1.255 C19 A1AID 16 A1AID C20 C16 C 0 1 Y N N N N N 170.812 212.377 181.823 -0.033 1.729 1.217 C20 A1AID 17 A1AID C22 C17 C 0 1 N N N N N N 170.509 211.014 177.457 3.976 3.124 0.087 C22 A1AID 18 A1AID C24 C18 C 0 1 N N N N N N 169.998 210.415 176.192 5.363 3.370 0.128 C24 A1AID 19 A1AID C25 C19 C 0 1 N N N N N N 169.538 209.009 176.200 6.236 2.339 0.261 C25 A1AID 20 A1AID C26 C20 C 0 1 Y N N N N N 169.591 208.190 177.501 5.731 1.018 0.357 C26 A1AID 21 A1AID C27 C21 C 0 1 Y N N N N N 169.139 206.849 177.458 6.592 -0.087 0.496 C27 A1AID 22 A1AID C29 C22 C 0 1 Y N N N N N 169.601 206.574 179.688 4.808 -1.571 0.549 C29 A1AID 23 A1AID C30 C23 C 0 1 Y N N N N N 169.557 205.642 180.746 4.347 -2.895 0.654 C30 A1AID 24 A1AID C31 C24 C 0 1 Y N N N N N 170.010 206.081 181.990 3.013 -3.158 0.627 C31 A1AID 25 A1AID C32 C25 C 0 1 Y N N N N N 170.484 207.396 182.156 2.077 -2.122 0.496 C32 A1AID 26 A1AID C33 C26 C 0 1 Y N N N N N 170.514 208.299 181.082 2.500 -0.807 0.391 C33 A1AID 27 A1AID C34 C27 C 0 1 Y N N N N N 170.056 207.849 179.827 3.868 -0.520 0.417 C34 A1AID 28 A1AID C35 C28 C 0 1 Y N N N N N 170.080 208.766 178.709 4.344 0.808 0.313 C35 A1AID 29 A1AID C36 C29 C 0 1 Y N N N N N 170.979 207.863 183.542 0.628 -2.436 0.469 C36 A1AID 30 A1AID C37 C30 C 0 1 Y N N N N N 170.505 207.245 184.703 0.184 -3.645 -0.046 C37 A1AID 31 A1AID C38 C31 C 0 1 Y N N N N N 170.988 207.716 185.942 -1.199 -3.894 -0.048 C38 A1AID 32 A1AID C39 C32 C 0 1 Y N N N N N 170.551 207.131 187.151 -1.723 -5.098 -0.548 C39 A1AID 33 A1AID C40 C33 C 0 1 Y N N N N N 171.037 207.607 188.366 -3.068 -5.304 -0.534 C40 A1AID 34 A1AID C45 C34 C 0 1 Y N N N N N 171.893 208.910 183.644 -0.305 -1.512 0.966 C45 A1AID 35 A1AID C46 C35 C 0 1 N N N N N N 174.538 211.549 181.455 -0.491 0.395 -2.298 C46 A1AID 36 A1AID F47 F1 F 0 1 N N N N N N 174.795 211.759 182.778 0.501 0.042 -3.218 F47 A1AID 37 A1AID F48 F2 F 0 1 N N N N N N 175.161 212.518 180.711 -1.252 -0.735 -1.977 F48 A1AID 38 A1AID F49 F3 F 0 1 N N N N N N 175.012 210.315 181.089 -1.321 1.372 -2.858 F49 A1AID 39 A1AID N09 N2 N 0 1 N N N N N N 171.754 215.106 184.974 -4.731 1.396 0.466 N09 A1AID 40 A1AID N12 N3 N 0 1 N N N N N N 172.793 213.049 183.223 -2.007 1.006 0.029 N12 A1AID 41 A1AID N28 N4 N 0 1 Y N N N N N 169.141 206.051 178.524 6.122 -1.305 0.584 N28 A1AID 42 A1AID N44 N5 N 0 1 Y N N N N N 172.324 209.326 184.826 -1.590 -1.763 0.955 N44 A1AID 43 A1AID O08 O1 O 0 1 N N N N N N 171.728 215.655 187.220 -6.259 1.757 2.038 O08 A1AID 44 A1AID O23 O2 O 0 1 N N N N N N 170.880 212.143 177.457 3.203 4.060 -0.032 O23 A1AID 45 A1AID H1 H1 H 0 1 N N N N N N 172.330 209.026 189.334 -4.998 -4.523 -0.028 H1 A1AID 46 A1AID H2 H2 H 0 1 N N N N N N 173.094 210.050 187.218 -4.146 -2.423 0.859 H2 A1AID 47 A1AID H3 H3 H 0 1 N N N N N N 174.047 214.695 183.377 -2.466 1.751 1.939 H3 A1AID 48 A1AID H4 H4 H 0 1 N N N N N N 173.078 214.594 181.868 -1.983 0.038 1.894 H4 A1AID 49 A1AID H5 H5 H 0 1 N N N N N N 172.421 216.444 183.482 -4.095 -0.578 0.823 H5 A1AID 50 A1AID H6 H6 H 0 1 N N N N N N 171.093 215.342 182.982 -4.457 0.376 2.286 H6 A1AID 51 A1AID H7 H7 H 0 1 N Y N N N N 174.586 217.936 185.670 -8.240 4.188 -0.156 H7 A1AID 52 A1AID H8 H8 H 0 1 N N N N N N 173.359 219.343 185.554 -7.978 3.410 1.525 H8 A1AID 53 A1AID H9 H9 H 0 1 N N N N N N 171.683 218.059 185.847 -6.330 2.991 -1.008 H9 A1AID 54 A1AID H10 H10 H 0 1 N N N N N N 171.640 211.752 184.367 -2.234 2.250 -1.649 H10 A1AID 55 A1AID H11 H11 H 0 1 N N N N N N 172.997 212.551 185.231 -2.610 3.016 -0.086 H11 A1AID 56 A1AID H12 H12 H 0 1 N N N N N N 170.273 213.689 184.500 -4.709 2.592 -1.265 H12 A1AID 57 A1AID H13 H13 H 0 1 N N N N N N 171.020 213.504 186.123 -4.262 0.887 -1.523 H13 A1AID 58 A1AID H14 H14 H 0 1 N N N N N N 173.119 210.376 179.448 2.121 0.930 -1.877 H14 A1AID 59 A1AID H15 H15 H 0 1 N N N N N N 169.205 211.739 180.544 1.792 2.326 2.151 H15 A1AID 60 A1AID H16 H16 H 0 1 N N N N N N 170.169 212.937 182.486 -0.638 1.951 2.083 H16 A1AID 61 A1AID H17 H17 H 0 1 N N N N N N 169.964 210.998 175.284 5.733 4.382 0.054 H17 A1AID 62 A1AID H18 H18 H 0 1 N N N N N N 169.165 208.558 175.293 7.300 2.522 0.292 H18 A1AID 63 A1AID H19 H19 H 0 1 N N N N N N 168.777 206.456 176.520 7.659 0.073 0.530 H19 A1AID 64 A1AID H20 H20 H 0 1 N N N N N N 169.190 204.637 180.600 5.054 -3.705 0.755 H20 A1AID 65 A1AID H21 H21 H 0 1 N N N N N N 169.997 205.406 182.833 2.671 -4.179 0.708 H21 A1AID 66 A1AID H22 H22 H 0 1 N N N N N N 170.877 209.308 181.213 1.778 -0.010 0.289 H22 A1AID 67 A1AID H23 H23 H 0 1 N N N N N N 169.793 206.434 184.653 0.881 -4.374 -0.435 H23 A1AID 68 A1AID H24 H24 H 0 1 N N N N N N 169.842 206.317 187.133 -1.061 -5.856 -0.942 H24 A1AID 69 A1AID H25 H25 H 0 1 N N N N N N 170.704 207.161 189.292 -3.470 -6.230 -0.919 H25 A1AID 70 A1AID H26 H26 H 0 1 N N N N N N 172.255 209.389 182.747 0.046 -0.572 1.367 H26 A1AID 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AID C24 C25 DOUB N N 1 A1AID C24 C22 SING N N 2 A1AID C25 C26 SING N N 3 A1AID O23 C22 DOUB N N 4 A1AID C22 N21 SING N N 5 A1AID C27 C26 DOUB Y N 6 A1AID C27 N28 SING Y N 7 A1AID C26 C35 SING Y N 8 A1AID N28 C29 DOUB Y N 9 A1AID N21 C35 SING N N 10 A1AID N21 C18 SING N N 11 A1AID C35 C34 DOUB Y N 12 A1AID C29 C34 SING Y N 13 A1AID C29 C30 SING Y N 14 A1AID C34 C33 SING Y N 15 A1AID C18 C17 DOUB Y N 16 A1AID C18 C19 SING Y N 17 A1AID C17 C16 SING Y N 18 A1AID F48 C46 SING N N 19 A1AID C19 C20 DOUB Y N 20 A1AID C30 C31 DOUB Y N 21 A1AID C33 C32 DOUB Y N 22 A1AID F49 C46 SING N N 23 A1AID C16 C46 SING N N 24 A1AID C16 C15 DOUB Y N 25 A1AID C46 F47 SING N N 26 A1AID C20 C15 SING Y N 27 A1AID C31 C32 SING Y N 28 A1AID C15 N12 SING N N 29 A1AID C32 C36 SING N N 30 A1AID C11 N12 SING N N 31 A1AID C11 C10 SING N N 32 A1AID N12 C13 SING N N 33 A1AID C36 C45 DOUB Y N 34 A1AID C36 C37 SING Y N 35 A1AID C10 N09 SING N N 36 A1AID C45 N44 SING Y N 37 A1AID C13 C14 SING N N 38 A1AID C37 C38 DOUB Y N 39 A1AID N44 C43 DOUB Y N 40 A1AID N09 C14 SING N N 41 A1AID N09 C07 SING N N 42 A1AID C05 C06 DOUB N N 43 A1AID C06 C07 SING N N 44 A1AID C38 C43 SING Y N 45 A1AID C38 C39 SING Y N 46 A1AID C43 C42 SING Y N 47 A1AID C07 O08 DOUB N N 48 A1AID C39 C40 DOUB Y N 49 A1AID C42 C41 DOUB Y N 50 A1AID C40 C41 SING Y N 51 A1AID C41 H1 SING N N 52 A1AID C42 H2 SING N N 53 A1AID C11 H3 SING N N 54 A1AID C11 H4 SING N N 55 A1AID C10 H5 SING N N 56 A1AID C10 H6 SING N N 57 A1AID C05 H7 SING N N 58 A1AID C05 H8 SING N N 59 A1AID C06 H9 SING N N 60 A1AID C13 H10 SING N N 61 A1AID C13 H11 SING N N 62 A1AID C14 H12 SING N N 63 A1AID C14 H13 SING N N 64 A1AID C17 H14 SING N N 65 A1AID C19 H15 SING N N 66 A1AID C20 H16 SING N N 67 A1AID C24 H17 SING N N 68 A1AID C25 H18 SING N N 69 A1AID C27 H19 SING N N 70 A1AID C30 H20 SING N N 71 A1AID C31 H21 SING N N 72 A1AID C33 H22 SING N N 73 A1AID C37 H23 SING N N 74 A1AID C39 H24 SING N N 75 A1AID C40 H25 SING N N 76 A1AID C45 H26 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AID SMILES ACDLabs 12.01 "O=C(C=C)N1CCN(CC1)c1ccc(cc1C(F)(F)F)N1c2c3cc(ccc3ncc2C=CC1=O)c1cc2ccccc2nc1" A1AID InChI InChI 1.06 "InChI=1S/C35H26F3N5O2/c1-2-32(44)42-15-13-41(14-16-42)31-11-9-26(19-28(31)35(36,37)38)43-33(45)12-8-24-20-40-30-10-7-22(18-27(30)34(24)43)25-17-23-5-3-4-6-29(23)39-21-25/h2-12,17-21H,1,13-16H2" A1AID InChIKey InChI 1.06 WEDHWEKOKKUGCJ-UHFFFAOYSA-N A1AID SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1cc(ccc1N2CCN(CC2)C(=O)C=C)N3C(=O)C=Cc4cnc5ccc(cc5c34)c6cnc7ccccc7c6" A1AID SMILES CACTVS 3.385 "FC(F)(F)c1cc(ccc1N2CCN(CC2)C(=O)C=C)N3C(=O)C=Cc4cnc5ccc(cc5c34)c6cnc7ccccc7c6" A1AID SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=CC(=O)N1CCN(CC1)c2ccc(cc2C(F)(F)F)N3c4c5cc(ccc5ncc4C=CC3=O)c6cc7ccccc7nc6" A1AID SMILES "OpenEye OEToolkits" 2.0.7 "C=CC(=O)N1CCN(CC1)c2ccc(cc2C(F)(F)F)N3c4c5cc(ccc5ncc4C=CC3=O)c6cc7ccccc7nc6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AID "SYSTEMATIC NAME" ACDLabs 12.01 "(1M,9M)-1-{4-[4-(prop-2-enoyl)piperazin-1-yl]-3-(trifluoromethyl)phenyl}-9-(quinolin-3-yl)benzo[h][1,6]naphthyridin-2(1H)-one" A1AID "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-(4-prop-2-enoylpiperazin-1-yl)-3-(trifluoromethyl)phenyl]-9-quinolin-3-yl-benzo[h][1,6]naphthyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AID "Create component" 2024-03-15 RCSB A1AID "Modify PCM" 2024-09-27 PDBE A1AID "Initial release" 2026-04-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AID _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C05 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #