data_A1AIJ # _chem_comp.id A1AIJ _chem_comp.name verinurad _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H16 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-{[(3P)-3-(4-cyanonaphthalen-1-yl)pyridin-4-yl]sulfanyl}-2-methylpropanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-18 _chem_comp.pdbx_modified_date 2024-09-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.418 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AIJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9B1I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AIJ C01 C1 C 0 1 N N N N N N 119.355 123.797 118.311 3.463 0.048 1.992 C01 A1AIJ 1 A1AIJ C02 C2 C 0 1 N N N N N N 119.756 123.437 119.739 2.847 1.112 1.082 C02 A1AIJ 2 A1AIJ C03 C3 C 0 1 N N N N N N 119.778 124.693 120.601 2.966 2.484 1.750 C03 A1AIJ 3 A1AIJ C04 C4 C 0 1 N N N N N N 118.765 122.432 120.325 3.577 1.130 -0.236 C04 A1AIJ 4 A1AIJ C08 C5 C 0 1 Y N N N N N 121.559 121.543 118.320 1.253 -0.873 0.080 C08 A1AIJ 5 A1AIJ C09 C6 C 0 1 Y N N N N N 122.793 121.335 117.727 0.113 -1.649 -0.208 C09 A1AIJ 6 A1AIJ C10 C7 C 0 1 Y N N N N N 122.873 120.449 116.667 0.286 -2.909 -0.778 C10 A1AIJ 7 A1AIJ C12 C8 C 0 1 Y N N N N N 120.629 119.985 116.783 2.581 -2.662 -0.788 C12 A1AIJ 8 A1AIJ C13 C9 C 0 1 Y N N N N N 120.454 120.854 117.846 2.504 -1.406 -0.225 C13 A1AIJ 9 A1AIJ C14 C10 C 0 1 Y N N N N N 124.021 122.083 118.232 -1.242 -1.136 0.089 C14 A1AIJ 10 A1AIJ C15 C11 C 0 1 Y N N N N N 124.569 123.104 117.467 -2.024 -1.765 1.043 C15 A1AIJ 11 A1AIJ C16 C12 C 0 1 Y N N N N N 125.686 123.793 117.922 -3.295 -1.314 1.349 C16 A1AIJ 12 A1AIJ C17 C13 C 0 1 Y N N N N N 126.252 123.462 119.143 -3.832 -0.206 0.701 C17 A1AIJ 13 A1AIJ C18 C14 C 0 1 Y N N N N N 125.695 122.430 119.919 -3.031 0.480 -0.312 C18 A1AIJ 14 A1AIJ C19 C15 C 0 1 Y N N N N N 126.271 122.100 121.155 -3.522 1.599 -0.996 C19 A1AIJ 15 A1AIJ C20 C16 C 0 1 Y N N N N N 125.725 121.082 121.923 -2.744 2.210 -1.934 C20 A1AIJ 16 A1AIJ C21 C17 C 0 1 Y N N N N N 124.609 120.388 121.472 -1.467 1.737 -2.222 C21 A1AIJ 17 A1AIJ C22 C18 C 0 1 Y N N N N N 124.039 120.715 120.252 -0.960 0.650 -1.575 C22 A1AIJ 18 A1AIJ C23 C19 C 0 1 Y N N N N N 124.592 121.746 119.471 -1.732 0.000 -0.600 C23 A1AIJ 19 A1AIJ C24 C20 C 0 1 N N N N N N 127.478 124.221 119.639 -5.149 0.256 1.020 C24 A1AIJ 20 A1AIJ N11 N1 N 0 1 Y N N N N N 121.811 119.804 116.230 1.492 -3.366 -1.042 N11 A1AIJ 21 A1AIJ N25 N2 N 0 1 N N N N N N 128.387 124.788 120.003 -6.194 0.622 1.274 N25 A1AIJ 22 A1AIJ O05 O1 O 0 1 N N N N N N 117.792 122.027 119.638 2.978 0.905 -1.261 O05 A1AIJ 23 A1AIJ O06 O2 O 0 1 N N N N N N 118.922 122.011 121.502 4.892 1.395 -0.271 O06 A1AIJ 24 A1AIJ S07 S1 S 0 1 N N N N N N 121.411 122.699 119.714 1.101 0.728 0.800 S07 A1AIJ 25 A1AIJ H1 H1 H 0 1 N N N N N N 118.351 124.246 118.314 4.543 0.186 2.033 H1 A1AIJ 26 A1AIJ H2 H2 H 0 1 N N N N N N 120.077 124.516 117.898 3.046 0.141 2.995 H2 A1AIJ 27 A1AIJ H3 H3 H 0 1 N N N N N N 119.348 122.888 117.692 3.238 -0.943 1.597 H3 A1AIJ 28 A1AIJ H4 H4 H 0 1 N N N N N N 120.067 124.428 121.629 4.018 2.753 1.842 H4 A1AIJ 29 A1AIJ H5 H5 H 0 1 N N N N N N 120.505 125.408 120.188 2.452 3.229 1.142 H5 A1AIJ 30 A1AIJ H6 H6 H 0 1 N N N N N N 118.778 125.150 120.608 2.512 2.447 2.740 H6 A1AIJ 31 A1AIJ H7 H7 H 0 1 N N N N N N 123.827 120.283 116.188 -0.578 -3.516 -1.005 H7 A1AIJ 32 A1AIJ H8 H8 H 0 1 N N N N N N 119.778 119.443 116.398 3.549 -3.078 -1.027 H8 A1AIJ 33 A1AIJ H9 H9 H 0 1 N N N N N N 119.481 120.992 118.295 3.403 -0.842 -0.024 H9 A1AIJ 34 A1AIJ H10 H10 H 0 1 N N N N N N 124.126 123.363 116.517 -1.632 -2.628 1.561 H10 A1AIJ 35 A1AIJ H11 H11 H 0 1 N N N N N N 126.113 124.585 117.325 -3.878 -1.829 2.098 H11 A1AIJ 36 A1AIJ H12 H12 H 0 1 N N N N N N 127.138 122.638 121.508 -4.511 1.976 -0.781 H12 A1AIJ 37 A1AIJ H13 H13 H 0 1 N N N N N N 126.169 120.828 122.874 -3.124 3.074 -2.460 H13 A1AIJ 38 A1AIJ H14 H14 H 0 1 N N N N N N 124.186 119.595 122.071 -0.869 2.237 -2.970 H14 A1AIJ 39 A1AIJ H15 H15 H 0 1 N N N N N N 123.170 120.178 119.901 0.032 0.293 -1.809 H15 A1AIJ 40 A1AIJ H16 H16 H 0 1 N N N N N N 118.227 121.400 121.716 5.317 1.395 -1.140 H16 A1AIJ 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AIJ N11 C10 DOUB Y N 1 A1AIJ N11 C12 SING Y N 2 A1AIJ C10 C09 SING Y N 3 A1AIJ C12 C13 DOUB Y N 4 A1AIJ C15 C16 DOUB Y N 5 A1AIJ C15 C14 SING Y N 6 A1AIJ C09 C14 SING N N 7 A1AIJ C09 C08 DOUB Y N 8 A1AIJ C13 C08 SING Y N 9 A1AIJ C16 C17 SING Y N 10 A1AIJ C14 C23 DOUB Y N 11 A1AIJ C01 C02 SING N N 12 A1AIJ C08 S07 SING N N 13 A1AIJ C17 C24 SING N N 14 A1AIJ C17 C18 DOUB Y N 15 A1AIJ C23 C18 SING Y N 16 A1AIJ C23 C22 SING Y N 17 A1AIJ O05 C04 DOUB N N 18 A1AIJ C24 N25 TRIP N N 19 A1AIJ S07 C02 SING N N 20 A1AIJ C02 C04 SING N N 21 A1AIJ C02 C03 SING N N 22 A1AIJ C18 C19 SING Y N 23 A1AIJ C22 C21 DOUB Y N 24 A1AIJ C04 O06 SING N N 25 A1AIJ C19 C20 DOUB Y N 26 A1AIJ C21 C20 SING Y N 27 A1AIJ C01 H1 SING N N 28 A1AIJ C01 H2 SING N N 29 A1AIJ C01 H3 SING N N 30 A1AIJ C03 H4 SING N N 31 A1AIJ C03 H5 SING N N 32 A1AIJ C03 H6 SING N N 33 A1AIJ C10 H7 SING N N 34 A1AIJ C12 H8 SING N N 35 A1AIJ C13 H9 SING N N 36 A1AIJ C15 H10 SING N N 37 A1AIJ C16 H11 SING N N 38 A1AIJ C19 H12 SING N N 39 A1AIJ C20 H13 SING N N 40 A1AIJ C21 H14 SING N N 41 A1AIJ C22 H15 SING N N 42 A1AIJ O06 H16 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AIJ SMILES ACDLabs 12.01 "O=C(O)C(C)(C)Sc1ccncc1c1ccc(C#N)c2ccccc12" A1AIJ InChI InChI 1.06 "InChI=1S/C20H16N2O2S/c1-20(2,19(23)24)25-18-9-10-22-12-17(18)16-8-7-13(11-21)14-5-3-4-6-15(14)16/h3-10,12H,1-2H3,(H,23,24)" A1AIJ InChIKey InChI 1.06 YYBOLPLTQDKXPM-UHFFFAOYSA-N A1AIJ SMILES_CANONICAL CACTVS 3.385 "CC(C)(Sc1ccncc1c2ccc(C#N)c3ccccc23)C(O)=O" A1AIJ SMILES CACTVS 3.385 "CC(C)(Sc1ccncc1c2ccc(C#N)c3ccccc23)C(O)=O" A1AIJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)Sc1ccncc1c2ccc(c3c2cccc3)C#N" A1AIJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)Sc1ccncc1c2ccc(c3c2cccc3)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AIJ "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(3P)-3-(4-cyanonaphthalen-1-yl)pyridin-4-yl]sulfanyl}-2-methylpropanoic acid" A1AIJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-(4-cyanonaphthalen-1-yl)pyridin-4-yl]sulfanyl-2-methyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AIJ "Create component" 2024-03-18 RCSB A1AIJ "Initial release" 2024-09-18 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1AIJ _pdbx_chem_comp_synonyms.name "2-{[(3P)-3-(4-cyanonaphthalen-1-yl)pyridin-4-yl]sulfanyl}-2-methylpropanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type "systematic name" #