data_A1AJ9 # _chem_comp.id A1AJ9 _chem_comp.name "4-methoxy-2-(piperazin-1-yl)pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-03 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.234 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H2N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AJ9 N1 N1 N 0 1 Y N N N N N -8.141 4.607 -17.859 -1.185 -0.411 0.185 N1 A1AJ9 1 A1AJ9 N3 N2 N 0 1 N N N N N N -4.559 7.283 -19.331 3.820 -0.509 -0.357 N3 A1AJ9 2 A1AJ9 C4 C1 C 0 1 Y N N N N N -7.007 5.086 -17.328 -0.179 0.450 0.145 C4 A1AJ9 3 A1AJ9 C5 C2 C 0 1 N N N N N N -4.574 5.282 -17.815 1.450 -1.078 -0.591 C5 A1AJ9 4 A1AJ9 C6 C3 C 0 1 N N N N N N -3.763 6.430 -18.398 2.850 -1.610 -0.274 C6 A1AJ9 5 A1AJ9 C7 C4 C 0 1 N N N N N N -5.331 6.479 -20.318 3.479 0.562 0.590 C7 A1AJ9 6 A1AJ9 C8 C5 C 0 1 N N N N N N -6.163 5.388 -19.651 2.079 1.094 0.273 C8 A1AJ9 7 A1AJ9 C C6 C 0 1 N N N N N N -10.841 4.418 -18.612 -3.129 -2.253 0.291 C A1AJ9 8 A1AJ9 O O1 O 0 1 N N N N N N -10.252 3.770 -17.484 -3.459 -0.888 0.028 O A1AJ9 9 A1AJ9 C1 C7 C 0 1 Y N N N N N -9.097 4.270 -17.008 -2.433 -0.004 -0.014 C1 A1AJ9 10 A1AJ9 N N3 N 0 1 Y N N N N N -6.770 5.258 -16.019 -0.377 1.739 -0.091 N A1AJ9 11 A1AJ9 C3 C8 C 0 1 Y N N N N N -7.771 4.893 -15.200 -1.596 2.213 -0.298 C3 A1AJ9 12 A1AJ9 C2 C9 C 0 1 Y N N N N N -8.982 4.381 -15.624 -2.673 1.346 -0.265 C2 A1AJ9 13 A1AJ9 N2 N4 N 0 1 N N N N N N -5.990 5.387 -18.192 1.110 -0.007 0.356 N2 A1AJ9 14 A1AJ9 H14 H1 H 0 1 N N N N N N -5.199 7.834 -18.795 4.760 -0.842 -0.203 H14 A1AJ9 15 A1AJ9 H6 H3 H 0 1 N N N N N N -4.492 5.305 -16.718 1.432 -0.684 -1.607 H6 A1AJ9 16 A1AJ9 H5 H4 H 0 1 N N N N N N -4.172 4.330 -18.193 0.725 -1.887 -0.502 H5 A1AJ9 17 A1AJ9 H8 H5 H 0 1 N N N N N N -3.398 7.058 -17.572 3.116 -2.384 -0.993 H8 A1AJ9 18 A1AJ9 H7 H6 H 0 1 N N N N N N -2.906 6.012 -18.947 2.861 -2.029 0.733 H7 A1AJ9 19 A1AJ9 H10 H7 H 0 1 N N N N N N -6.005 7.150 -20.871 3.497 0.168 1.606 H10 A1AJ9 20 A1AJ9 H11 H8 H 0 1 N N N N N N -4.626 6.008 -21.019 4.204 1.371 0.501 H11 A1AJ9 21 A1AJ9 H12 H9 H 0 1 N N N N N N -7.225 5.557 -19.884 1.813 1.868 0.992 H12 A1AJ9 22 A1AJ9 H13 H10 H 0 1 N N N N N N -5.852 4.410 -20.047 2.069 1.512 -0.733 H13 A1AJ9 23 A1AJ9 H2 H11 H 0 1 N N N N N N -11.773 3.902 -18.886 -2.457 -2.621 -0.484 H2 A1AJ9 24 A1AJ9 H1 H12 H 0 1 N N N N N N -11.062 5.465 -18.359 -2.639 -2.327 1.262 H1 A1AJ9 25 A1AJ9 H H13 H 0 1 N N N N N N -10.141 4.386 -19.460 -4.039 -2.852 0.297 H A1AJ9 26 A1AJ9 H4 H14 H 0 1 N N N N N N -7.618 5.008 -14.137 -1.748 3.265 -0.489 H4 A1AJ9 27 A1AJ9 H3 H15 H 0 1 N N N N N N -9.769 4.093 -14.943 -3.677 1.707 -0.431 H3 A1AJ9 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AJ9 O C SING N N 1 A1AJ9 C1 O SING N N 2 A1AJ9 C1 C2 DOUB Y N 3 A1AJ9 C2 C3 SING Y N 4 A1AJ9 C3 N DOUB Y N 5 A1AJ9 N C4 SING Y N 6 A1AJ9 C4 N1 DOUB Y N 7 A1AJ9 N1 C1 SING Y N 8 A1AJ9 N2 C4 SING N N 9 A1AJ9 N2 C5 SING N N 10 A1AJ9 C5 C6 SING N N 11 A1AJ9 C6 N3 SING N N 12 A1AJ9 N3 C7 SING N N 13 A1AJ9 C7 C8 SING N N 14 A1AJ9 C8 N2 SING N N 15 A1AJ9 N3 H14 SING N N 16 A1AJ9 C5 H6 SING N N 17 A1AJ9 C5 H5 SING N N 18 A1AJ9 C6 H8 SING N N 19 A1AJ9 C6 H7 SING N N 20 A1AJ9 C7 H10 SING N N 21 A1AJ9 C7 H11 SING N N 22 A1AJ9 C8 H12 SING N N 23 A1AJ9 C8 H13 SING N N 24 A1AJ9 C H2 SING N N 25 A1AJ9 C H1 SING N N 26 A1AJ9 C H SING N N 27 A1AJ9 C3 H4 SING N N 28 A1AJ9 C2 H3 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AJ9 SMILES ACDLabs 12.01 "COc1nc(ncc1)N1CCNCC1" A1AJ9 InChI InChI 1.06 "InChI=1S/C9H14N4O/c1-14-8-2-3-11-9(12-8)13-6-4-10-5-7-13/h2-3,10H,4-7H2,1H3" A1AJ9 InChIKey InChI 1.06 UWNRWWIRIZDKLH-UHFFFAOYSA-N A1AJ9 SMILES_CANONICAL CACTVS 3.385 "COc1ccnc(n1)N2CCNCC2" A1AJ9 SMILES CACTVS 3.385 "COc1ccnc(n1)N2CCNCC2" A1AJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccnc(n1)N2CCNCC2" A1AJ9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccnc(n1)N2CCNCC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AJ9 "SYSTEMATIC NAME" ACDLabs 12.01 "4-methoxy-2-(piperazin-1-yl)pyrimidine" A1AJ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 4-methoxy-2-piperazin-1-yl-pyrimidine # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AJ9 "Create component" 2024-04-03 RCSB A1AJ9 "Initial release" 2024-05-08 RCSB #