data_A1AJD
#
_chem_comp.id A1AJD
_chem_comp.name "(4Z)-oct-4-en-1-ol"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H16 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-04-03
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 128.212
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AJD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8VJP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AJD CEK C1 C 0 1 N N N N N N -12.756 3.663 -19.211 2.935 0.786 -0.247 CEK A1AJD 1
A1AJD CEL C2 C 0 1 N N N N N N -14.059 2.766 -19.182 2.080 -0.440 0.080 CEL A1AJD 2
A1AJD CEM C3 C 0 1 N N N N N N -13.805 1.244 -18.907 0.692 -0.274 -0.542 CEM A1AJD 3
A1AJD CEN C4 C 0 1 N N N N N N -14.970 0.515 -18.912 -0.150 -1.482 -0.219 CEN A1AJD 4
A1AJD CEO C5 C 0 1 N N N N N N -15.067 -0.626 -18.108 -1.334 -1.329 0.321 CEO A1AJD 5
A1AJD CEP C6 C 0 1 N N N N N N -14.186 -1.285 -17.200 -1.925 0.049 0.464 CEP A1AJD 6
A1AJD CEQ C7 C 0 1 N N N N N N -14.037 -0.660 -15.788 -3.314 0.077 -0.176 CEQ A1AJD 7
A1AJD CER C8 C 0 1 N N N N N N -13.069 -1.482 -14.893 -3.915 1.477 -0.031 CER A1AJD 8
A1AJD O1 O1 O 0 1 N Y N N N N -11.977 3.724 -17.840 4.232 0.631 0.333 O1 A1AJD 9
A1AJD H1 H1 H 0 1 N N N N N N -12.076 3.258 -19.975 3.031 0.884 -1.329 H1 A1AJD 10
A1AJD H2 H2 H 0 1 N N N N N N -13.049 4.687 -19.486 2.460 1.679 0.158 H2 A1AJD 11
A1AJD H3 H3 H 0 1 N N N N N N -14.721 3.150 -18.392 2.556 -1.333 -0.326 H3 A1AJD 12
A1AJD H4 H4 H 0 1 N N N N N N -14.559 2.858 -20.157 1.985 -0.538 1.161 H4 A1AJD 13
A1AJD H5 H5 H 0 1 N N N N N N -13.137 0.850 -19.687 0.217 0.619 -0.136 H5 A1AJD 14
A1AJD H6 H6 H 0 1 N N N N N N -13.324 1.137 -17.923 0.788 -0.176 -1.623 H6 A1AJD 15
A1AJD H7 H7 H 0 1 N N N N N N -15.802 0.820 -19.530 0.222 -2.473 -0.433 H7 A1AJD 16
A1AJD H8 H8 H 0 1 N N N N N N -16.024 -1.119 -18.194 -1.886 -2.192 0.664 H8 A1AJD 17
A1AJD H9 H9 H 0 1 N N N N N N -14.551 -2.315 -17.071 -2.007 0.302 1.521 H9 A1AJD 18
A1AJD H10 H10 H 0 1 N N N N N N -13.188 -1.305 -17.661 -1.281 0.774 -0.034 H10 A1AJD 19
A1AJD H11 H11 H 0 1 N N N N N N -13.645 0.363 -15.891 -3.233 -0.175 -1.233 H11 A1AJD 20
A1AJD H12 H12 H 0 1 N N N N N N -15.026 -0.627 -15.307 -3.958 -0.648 0.322 H12 A1AJD 21
A1AJD H13 H13 H 0 1 N N N N N N -12.991 -1.007 -13.904 -3.996 1.730 1.026 H13 A1AJD 22
A1AJD H14 H14 H 0 1 N N N N N N -13.455 -2.506 -14.779 -3.271 2.202 -0.529 H14 A1AJD 23
A1AJD H15 H15 H 0 1 N N N N N N -12.075 -1.516 -15.363 -4.905 1.497 -0.487 H15 A1AJD 24
A1AJD H16 H16 H 0 1 N N N N N N -11.211 4.278 -17.935 4.829 1.373 0.166 H16 A1AJD 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AJD CEK CEL SING N N 1
A1AJD CEL CEM SING N N 2
A1AJD CEN CEM SING N N 3
A1AJD CEN CEO DOUB N Z 4
A1AJD CEO CEP SING N N 5
A1AJD CEP CEQ SING N N 6
A1AJD CEQ CER SING N N 7
A1AJD CEK O1 SING N N 8
A1AJD CEK H1 SING N N 9
A1AJD CEK H2 SING N N 10
A1AJD CEL H3 SING N N 11
A1AJD CEL H4 SING N N 12
A1AJD CEM H5 SING N N 13
A1AJD CEM H6 SING N N 14
A1AJD CEN H7 SING N N 15
A1AJD CEO H8 SING N N 16
A1AJD CEP H9 SING N N 17
A1AJD CEP H10 SING N N 18
A1AJD CEQ H11 SING N N 19
A1AJD CEQ H12 SING N N 20
A1AJD CER H13 SING N N 21
A1AJD CER H14 SING N N 22
A1AJD CER H15 SING N N 23
A1AJD O1 H16 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AJD SMILES ACDLabs 12.01 CCC\C=C/CCCO
A1AJD InChI InChI 1.06 InChI=1S/C8H16O/c1-2-3-4-5-6-7-8-9/h4-5,9H,2-3,6-8H2,1H3/b5-4-
A1AJD InChIKey InChI 1.06 OZQBPZSICOOLGU-PLNGDYQASA-N
A1AJD SMILES_CANONICAL CACTVS 3.385 CCC\C=C/CCCO
A1AJD SMILES CACTVS 3.385 CCCC=CCCCO
A1AJD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCC/C=C\CCCO
A1AJD SMILES "OpenEye OEToolkits" 2.0.7 CCCC=CCCCO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AJD "SYSTEMATIC NAME" ACDLabs 12.01 "(4Z)-oct-4-en-1-ol"
A1AJD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{Z})-oct-4-en-1-ol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AJD "Create component" 2024-04-03 RCSB
A1AJD "Initial release" 2024-05-15 RCSB
A1AJD "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 A1AJD ALA None Crosslinker "Amino-acid backbone" "Any position" CEK CA ? ?
2 A1AJD ALA None Crosslinker "Amino-acid backbone" "Any position" CER CA ? ?
#