data_A1AK2 # _chem_comp.id A1AK2 _chem_comp.name "7-{(1S)-2-methyl-1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]propyl}-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-05 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 370.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AK2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AK2 N1 N1 N 0 1 Y N N N N N -0.031 14.117 -0.747 -3.238 -1.501 0.570 N1 A1AK2 1 A1AK2 N3 N2 N 0 1 Y N N N N N -3.431 14.822 1.414 -6.204 1.249 0.859 N3 A1AK2 2 A1AK2 C4 C1 C 0 1 Y N N N N N -1.265 13.966 -1.284 -3.063 -0.250 0.154 C4 A1AK2 3 A1AK2 C5 C2 C 0 1 Y N N N N N 0.006 14.487 0.540 -4.387 -1.890 1.093 C5 A1AK2 4 A1AK2 C6 C3 C 0 1 Y N N N N N -2.217 14.621 0.808 -5.336 0.191 0.846 C6 A1AK2 5 A1AK2 C7 C4 C 0 1 Y N N N N N -4.416 14.600 0.479 -5.599 2.359 0.329 C7 A1AK2 6 A1AK2 C8 C5 C 0 1 Y N N N N N -3.865 14.270 -0.717 -4.342 2.060 -0.038 C8 A1AK2 7 A1AK2 C10 C6 C 0 1 Y N N N N N -0.022 14.649 -4.241 0.555 -0.058 -0.540 C10 A1AK2 8 A1AK2 C13 C7 C 0 1 Y N N N N N 0.333 17.241 -5.328 2.989 1.293 -0.591 C13 A1AK2 9 A1AK2 C15 C8 C 0 1 Y N N N N N -1.061 15.285 -4.903 1.652 -0.561 0.129 C15 A1AK2 10 A1AK2 C17 C9 C 0 1 N N N N N N -0.680 19.385 -6.173 5.228 1.860 0.439 C17 A1AK2 11 A1AK2 O1 O1 O 0 1 N N N N N N -3.103 17.746 -5.000 4.290 -1.918 0.574 O1 A1AK2 12 A1AK2 S S1 S 0 1 N N N N N N -2.293 17.229 -6.072 4.208 -0.573 1.025 S A1AK2 13 A1AK2 O O2 O 0 1 N N N N N N -2.883 16.253 -6.947 3.906 -0.269 2.380 O A1AK2 14 A1AK2 C16 C10 C 0 1 N N N N N N -1.648 18.563 -7.012 5.647 0.382 0.457 C16 A1AK2 15 A1AK2 C18 C11 C 0 1 N N N N N N 0.586 18.627 -5.878 4.257 2.087 -0.705 C18 A1AK2 16 A1AK2 C12 C12 C 0 1 Y N N N N N 1.365 16.565 -4.685 1.875 1.798 -1.259 C12 A1AK2 17 A1AK2 C11 C13 C 0 1 Y N N N N N 1.194 15.301 -4.154 0.670 1.131 -1.235 C11 A1AK2 18 A1AK2 C14 C14 C 0 1 Y N N N N N -0.896 16.566 -5.412 2.864 0.116 0.110 C14 A1AK2 19 A1AK2 C3 C15 C 0 1 N N S N N N -0.246 13.360 -3.475 -0.755 -0.803 -0.519 C3 A1AK2 20 A1AK2 C1 C16 C 0 1 N N N N N N -0.372 12.126 -4.392 -0.912 -1.594 -1.819 C1 A1AK2 21 A1AK2 C2 C17 C 0 1 N N N N N N -0.284 10.842 -3.587 -0.767 -0.649 -3.013 C2 A1AK2 22 A1AK2 C C18 C 0 1 N N N N N N 0.692 12.116 -5.481 0.167 -2.676 -1.892 C A1AK2 23 A1AK2 N N3 N 0 1 N N N N N N -1.349 13.425 -2.526 -1.858 0.153 -0.393 N A1AK2 24 A1AK2 C9 C19 C 0 1 Y N N N N N -2.446 14.262 -0.527 -4.131 0.650 0.283 C9 A1AK2 25 A1AK2 N2 N4 N 0 1 Y N N N N N -1.009 14.732 1.378 -5.415 -1.081 1.233 N2 A1AK2 26 A1AK2 H1 H1 H 0 1 N N N N N N -3.575 15.084 2.368 -7.114 1.218 1.194 H1 A1AK2 27 A1AK2 H10 H2 H 0 1 N N N N N N 0.994 14.604 0.961 -4.487 -2.915 1.418 H10 A1AK2 28 A1AK2 H11 H3 H 0 1 N N N N N N -5.476 14.677 0.670 -6.063 3.328 0.222 H11 A1AK2 29 A1AK2 H12 H4 H 0 1 N N N N N N -4.394 14.055 -1.634 -3.625 2.733 -0.486 H12 A1AK2 30 A1AK2 H15 H5 H 0 1 N N N N N N -2.008 14.779 -5.024 1.567 -1.490 0.673 H15 A1AK2 31 A1AK2 H18 H6 H 0 1 N N N N N N -0.425 20.304 -6.721 4.746 2.113 1.383 H18 A1AK2 32 A1AK2 H19 H7 H 0 1 N N N N N N -1.167 19.648 -5.223 6.109 2.486 0.301 H19 A1AK2 33 A1AK2 H17 H8 H 0 1 N N N N N N -1.118 18.165 -7.890 5.931 0.064 -0.546 H17 A1AK2 34 A1AK2 H16 H9 H 0 1 N N N N N N -2.476 19.206 -7.344 6.482 0.240 1.143 H16 A1AK2 35 A1AK2 H21 H10 H 0 1 N N N N N N 1.164 18.534 -6.810 4.751 1.821 -1.639 H21 A1AK2 36 A1AK2 H20 H11 H 0 1 N N N N N N 1.170 19.195 -5.140 4.002 3.146 -0.740 H20 A1AK2 37 A1AK2 H14 H12 H 0 1 N N N N N N 2.330 17.043 -4.598 1.957 2.728 -1.804 H14 A1AK2 38 A1AK2 H13 H13 H 0 1 N N N N N N 2.024 14.814 -3.663 -0.183 1.537 -1.758 H13 A1AK2 39 A1AK2 H H14 H 0 1 N N N N N N 0.667 13.198 -2.884 -0.769 -1.489 0.328 H A1AK2 40 A1AK2 H5 H15 H 0 1 N N N N N N -1.359 12.162 -4.876 -1.897 -2.061 -1.843 H5 A1AK2 41 A1AK2 H7 H16 H 0 1 N N N N N N -1.053 10.849 -2.800 0.218 -0.182 -2.989 H7 A1AK2 42 A1AK2 H6 H17 H 0 1 N N N N N N -0.447 9.981 -4.252 -0.879 -1.212 -3.939 H6 A1AK2 43 A1AK2 H8 H18 H 0 1 N N N N N N 0.712 10.766 -3.126 -1.536 0.122 -2.961 H8 A1AK2 44 A1AK2 H3 H19 H 0 1 N N N N N N 0.629 13.046 -6.065 0.064 -3.350 -1.041 H3 A1AK2 45 A1AK2 H4 H20 H 0 1 N N N N N N 1.688 12.040 -5.020 0.055 -3.240 -2.818 H4 A1AK2 46 A1AK2 H2 H21 H 0 1 N N N N N N 0.529 11.255 -6.145 1.152 -2.209 -1.868 H2 A1AK2 47 A1AK2 H9 H22 H 0 1 N N N N N N -2.074 13.932 -2.991 -1.743 1.068 -0.692 H9 A1AK2 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AK2 C C1 SING N N 1 A1AK2 C2 C1 SING N N 2 A1AK2 C1 C3 SING N N 3 A1AK2 N C3 SING N N 4 A1AK2 C4 N SING N N 5 A1AK2 C4 N1 DOUB Y N 6 A1AK2 N1 C5 SING Y N 7 A1AK2 C5 N2 DOUB Y N 8 A1AK2 N2 C6 SING Y N 9 A1AK2 C6 N3 SING Y N 10 A1AK2 N3 C7 SING Y N 11 A1AK2 C7 C8 DOUB Y N 12 A1AK2 C8 C9 SING Y N 13 A1AK2 C9 C4 SING Y N 14 A1AK2 C6 C9 DOUB Y N 15 A1AK2 C3 C10 SING N N 16 A1AK2 C10 C11 DOUB Y N 17 A1AK2 C11 C12 SING Y N 18 A1AK2 C12 C13 DOUB Y N 19 A1AK2 C13 C14 SING Y N 20 A1AK2 C15 C14 DOUB Y N 21 A1AK2 C10 C15 SING Y N 22 A1AK2 C14 S SING N N 23 A1AK2 O S DOUB N N 24 A1AK2 S O1 DOUB N N 25 A1AK2 C16 S SING N N 26 A1AK2 C17 C16 SING N N 27 A1AK2 C18 C17 SING N N 28 A1AK2 C13 C18 SING N N 29 A1AK2 N3 H1 SING N N 30 A1AK2 C5 H10 SING N N 31 A1AK2 C7 H11 SING N N 32 A1AK2 C8 H12 SING N N 33 A1AK2 C15 H15 SING N N 34 A1AK2 C17 H18 SING N N 35 A1AK2 C17 H19 SING N N 36 A1AK2 C16 H17 SING N N 37 A1AK2 C16 H16 SING N N 38 A1AK2 C18 H21 SING N N 39 A1AK2 C18 H20 SING N N 40 A1AK2 C12 H14 SING N N 41 A1AK2 C11 H13 SING N N 42 A1AK2 C3 H SING N N 43 A1AK2 C1 H5 SING N N 44 A1AK2 C2 H7 SING N N 45 A1AK2 C2 H6 SING N N 46 A1AK2 C2 H8 SING N N 47 A1AK2 C H3 SING N N 48 A1AK2 C H4 SING N N 49 A1AK2 C H2 SING N N 50 A1AK2 N H9 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AK2 SMILES ACDLabs 12.01 "CC(C)C(Nc1ncnc2[NH]ccc21)c1ccc2CCCS(=O)(=O)c2c1" A1AK2 InChI InChI 1.06 "InChI=1S/C19H22N4O2S/c1-12(2)17(23-19-15-7-8-20-18(15)21-11-22-19)14-6-5-13-4-3-9-26(24,25)16(13)10-14/h5-8,10-12,17H,3-4,9H2,1-2H3,(H2,20,21,22,23)/t17-/m0/s1" A1AK2 InChIKey InChI 1.06 WLJITGAGZLIWOY-KRWDZBQOSA-N A1AK2 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2[nH]ccc12)c3ccc4CCC[S](=O)(=O)c4c3" A1AK2 SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2[nH]ccc12)c3ccc4CCC[S](=O)(=O)c4c3" A1AK2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4cc[nH]c4ncn3" A1AK2 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AK2 "SYSTEMATIC NAME" ACDLabs 12.01 "7-{(1S)-2-methyl-1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]propyl}-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione" A1AK2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AK2 "Create component" 2024-04-05 RCSB A1AK2 "Initial release" 2024-05-15 RCSB #