data_A1AK3 # _chem_comp.id A1AK3 _chem_comp.name "4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-[(3R)-1-methylpyrrolidin-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H32 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-05 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.625 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AK3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GZV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AK3 N1 N1 N 0 1 Y N N N N N 4.121 -15.127 15.905 -0.140 -3.010 -0.800 N1 A1AK3 1 A1AK3 N3 N2 N 0 1 N N N N N N 10.288 -17.746 16.920 5.945 0.017 0.071 N3 A1AK3 2 A1AK3 C4 C1 C 0 1 Y N N N N N 2.269 -14.617 19.062 -3.047 -0.294 0.558 C4 A1AK3 3 A1AK3 C5 C2 C 0 1 Y N N N N N 2.704 -14.761 20.380 -4.204 -0.174 -0.183 C5 A1AK3 4 A1AK3 C6 C3 C 0 1 Y N N N N N 2.690 -13.676 21.249 -5.022 0.938 -0.043 C6 A1AK3 5 A1AK3 C7 C4 C 0 1 N N N N N N 2.962 -12.507 23.756 -7.423 2.390 -0.305 C7 A1AK3 6 A1AK3 C8 C5 C 0 1 N N N N N N 3.084 -11.245 22.914 -6.434 3.536 -0.044 C8 A1AK3 7 A1AK3 C10 C6 C 0 1 Y N N N N N 2.206 -12.419 20.850 -4.691 1.934 0.846 C10 A1AK3 8 A1AK3 C13 C7 C 0 1 Y N N N N N 4.568 -15.870 16.943 0.196 -1.883 -0.180 C13 A1AK3 9 A1AK3 C15 C8 C 0 1 Y N N N N N 6.709 -15.882 15.892 2.489 -2.345 -0.807 C15 A1AK3 10 A1AK3 C17 C9 C 0 1 Y N N N N N 6.762 -17.038 17.857 2.272 -0.419 0.374 C17 A1AK3 11 A1AK3 C20 C10 C 0 1 N N S N N N 11.516 -18.496 17.195 7.038 0.919 0.442 C20 A1AK3 12 A1AK3 C21 C11 C 0 1 N N N N N N 12.688 -18.085 16.294 7.199 2.041 -0.606 C21 A1AK3 13 A1AK3 C22 C12 C 0 1 N N N N N N 14.468 -19.318 15.113 8.995 3.669 -0.518 C22 A1AK3 14 A1AK3 C24 C13 C 0 1 N N N N N N 11.339 -20.008 16.957 8.402 0.183 0.378 C24 A1AK3 15 A1AK3 O2 O1 O 0 1 N N N N N N 9.316 -18.216 18.900 4.446 1.314 1.075 O2 A1AK3 16 A1AK3 C19 C14 C 0 1 N N N N N N 9.264 -17.714 17.776 4.680 0.305 0.437 C19 A1AK3 17 A1AK3 C23 C15 C 0 1 N N N N N N 12.677 -20.426 16.374 9.380 1.357 0.119 C23 A1AK3 18 A1AK3 N4 N3 N 0 1 N N N N N N 13.050 -19.290 15.524 8.645 2.268 -0.785 N4 A1AK3 19 A1AK3 C18 C16 C 0 1 Y N N N N N 8.018 -17.046 17.300 3.585 -0.599 0.065 C18 A1AK3 20 A1AK3 N5 N4 N 0 1 Y N N N N N 7.990 -16.339 16.105 3.720 -1.773 -0.655 N5 A1AK3 21 A1AK3 N2 N5 N 0 1 Y N N N N N 6.283 -15.163 14.833 2.050 -3.453 -1.400 N2 A1AK3 22 A1AK3 C14 C17 C 0 1 Y N N N N N 4.995 -14.825 14.937 0.772 -3.763 -1.388 C14 A1AK3 23 A1AK3 C16 C18 C 0 1 Y N N N N N 5.922 -16.275 16.980 1.554 -1.507 -0.164 C16 A1AK3 24 A1AK3 N N6 N 0 1 N N N N N N 3.711 -16.257 17.895 -0.762 -1.101 0.433 N A1AK3 25 A1AK3 C3 C19 C 0 1 N N S N N N 2.347 -15.765 18.072 -2.168 -1.509 0.405 C3 A1AK3 26 A1AK3 C1 C20 C 0 1 N N N N N N 1.418 -16.941 18.444 -2.440 -2.482 1.553 C1 A1AK3 27 A1AK3 C2 C21 C 0 1 N N N N N N 1.408 -17.996 17.340 -3.909 -2.908 1.524 C2 A1AK3 28 A1AK3 C C22 C 0 1 N N N N N N -0.020 -16.473 18.710 -1.548 -3.716 1.398 C A1AK3 29 A1AK3 C12 C23 C 0 1 Y N N N N N 1.821 -13.370 18.652 -2.697 0.714 1.438 C12 A1AK3 30 A1AK3 C11 C24 C 0 1 Y N N N N N 1.788 -12.299 19.528 -3.513 1.814 1.582 C11 A1AK3 31 A1AK3 S S1 S 0 1 N N N N N N 3.412 -13.919 22.816 -6.475 1.026 -1.043 S A1AK3 32 A1AK3 O O2 O 0 1 N N N N N N 2.824 -15.078 23.414 -5.996 1.389 -2.331 O A1AK3 33 A1AK3 O1 O3 O 0 1 N N N N N N 4.851 -13.931 22.626 -7.130 -0.216 -0.824 O1 A1AK3 34 A1AK3 C9 C25 C 0 1 N N N N N N 2.070 -11.231 21.774 -5.524 3.154 1.109 C9 A1AK3 35 A1AK3 H22 H1 H 0 1 N N N N N N 10.214 -17.240 16.061 6.131 -0.788 -0.438 H22 A1AK3 36 A1AK3 H10 H2 H 0 1 N N N N N N 3.054 -15.722 20.727 -4.476 -0.954 -0.879 H10 A1AK3 37 A1AK3 H12 H3 H 0 1 N N N N N N 1.922 -12.616 24.097 -7.871 2.065 0.634 H12 A1AK3 38 A1AK3 H11 H4 H 0 1 N N N N N N 3.627 -12.426 24.628 -8.201 2.719 -0.994 H11 A1AK3 39 A1AK3 H13 H5 H 0 1 N N N N N N 2.911 -10.369 23.556 -5.836 3.712 -0.938 H13 A1AK3 40 A1AK3 H14 H6 H 0 1 N N N N N N 4.098 -11.195 22.491 -6.985 4.442 0.211 H14 A1AK3 41 A1AK3 H21 H7 H 0 1 N N N N N N 6.464 -17.515 18.779 1.855 0.408 0.931 H21 A1AK3 42 A1AK3 H1 H8 H 0 1 N N N N N N 11.811 -18.342 18.243 6.870 1.339 1.433 H1 A1AK3 43 A1AK3 H24 H9 H 0 1 N N N N N N 12.383 -17.275 15.615 6.752 1.732 -1.551 H24 A1AK3 44 A1AK3 H23 H10 H 0 1 N N N N N N 13.540 -17.751 16.904 6.722 2.953 -0.248 H23 A1AK3 45 A1AK3 H25 H11 H 0 1 N N N N N N 14.668 -20.239 14.546 8.726 3.922 0.507 H25 A1AK3 46 A1AK3 H26 H12 H 0 1 N N N N N N 14.684 -18.444 14.481 10.067 3.809 -0.657 H26 A1AK3 47 A1AK3 H27 H13 H 0 1 N N N N N N 15.109 -19.291 16.006 8.452 4.317 -1.207 H27 A1AK3 48 A1AK3 H31 H14 H 0 1 N N N N N N 10.521 -20.203 16.247 8.625 -0.309 1.324 H31 A1AK3 49 A1AK3 H30 H15 H 0 1 N N N N N N 11.138 -20.535 17.901 8.423 -0.531 -0.445 H30 A1AK3 50 A1AK3 H29 H16 H 0 1 N N N N N N 12.577 -21.346 15.779 9.620 1.863 1.054 H29 A1AK3 51 A1AK3 H28 H17 H 0 1 N N N N N N 13.421 -20.583 17.169 10.289 0.995 -0.361 H28 A1AK3 52 A1AK3 H2 H19 H 0 1 N N N N N N 8.771 -16.187 15.499 4.554 -2.132 -0.997 H2 A1AK3 53 A1AK3 H20 H20 H 0 1 N N N N N N 4.605 -14.225 14.128 0.454 -4.670 -1.880 H20 A1AK3 54 A1AK3 H19 H21 H 0 1 N N N N N N 4.174 -16.063 18.760 -0.503 -0.281 0.882 H19 A1AK3 55 A1AK3 H H22 H 0 1 N N N N N N 2.000 -15.380 17.102 -2.386 -1.997 -0.545 H A1AK3 56 A1AK3 H6 H23 H 0 1 N N N N N N 1.805 -17.405 19.363 -2.222 -1.994 2.503 H6 A1AK3 57 A1AK3 H7 H24 H 0 1 N N N N N N 2.437 -18.334 17.146 -4.127 -3.397 0.575 H7 A1AK3 58 A1AK3 H9 H25 H 0 1 N N N N N N 0.794 -18.852 17.657 -4.102 -3.602 2.342 H9 A1AK3 59 A1AK3 H8 H26 H 0 1 N N N N N N 0.986 -17.562 16.422 -4.544 -2.030 1.635 H8 A1AK3 60 A1AK3 H3 H27 H 0 1 N N N N N N -0.018 -15.713 19.505 -0.501 -3.412 1.418 H3 A1AK3 61 A1AK3 H4 H28 H 0 1 N N N N N N -0.441 -16.040 17.790 -1.741 -4.410 2.216 H4 A1AK3 62 A1AK3 H5 H29 H 0 1 N N N N N N -0.632 -17.331 19.025 -1.766 -4.204 0.448 H5 A1AK3 63 A1AK3 H18 H30 H 0 1 N N N N N N 1.493 -13.233 17.632 -1.787 0.636 2.015 H18 A1AK3 64 A1AK3 H17 H31 H 0 1 N N N N N N 1.428 -11.344 19.176 -3.234 2.596 2.273 H17 A1AK3 65 A1AK3 H15 H32 H 0 1 N N N N N N 1.058 -11.236 22.205 -4.858 3.991 1.319 H15 A1AK3 66 A1AK3 H16 H33 H 0 1 N N N N N N 2.215 -10.312 21.187 -6.137 2.972 1.992 H16 A1AK3 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AK3 C C1 SING N N 1 A1AK3 C2 C1 SING N N 2 A1AK3 C1 C3 SING N N 3 A1AK3 C4 C3 SING N N 4 A1AK3 C4 C5 DOUB Y N 5 A1AK3 C5 C6 SING Y N 6 A1AK3 C6 S SING N N 7 A1AK3 S C7 SING N N 8 A1AK3 C7 C8 SING N N 9 A1AK3 C8 C9 SING N N 10 A1AK3 O S DOUB N N 11 A1AK3 O1 S DOUB N N 12 A1AK3 C6 C10 DOUB Y N 13 A1AK3 C9 C10 SING N N 14 A1AK3 C10 C11 SING Y N 15 A1AK3 C11 C12 DOUB Y N 16 A1AK3 C12 C4 SING Y N 17 A1AK3 C3 N SING N N 18 A1AK3 N C13 SING N N 19 A1AK3 C13 N1 DOUB Y N 20 A1AK3 N1 C14 SING Y N 21 A1AK3 C14 N2 DOUB Y N 22 A1AK3 N2 C15 SING Y N 23 A1AK3 C15 C16 DOUB Y N 24 A1AK3 C13 C16 SING Y N 25 A1AK3 C16 C17 SING Y N 26 A1AK3 C17 C18 DOUB Y N 27 A1AK3 C18 C19 SING N N 28 A1AK3 N3 C19 SING N N 29 A1AK3 C20 N3 SING N N 30 A1AK3 C20 C21 SING N N 31 A1AK3 C21 N4 SING N N 32 A1AK3 C22 N4 SING N N 33 A1AK3 N4 C23 SING N N 34 A1AK3 C23 C24 SING N N 35 A1AK3 C24 C20 SING N N 36 A1AK3 C19 O2 DOUB N N 37 A1AK3 N5 C18 SING Y N 38 A1AK3 C15 N5 SING Y N 39 A1AK3 N3 H22 SING N N 40 A1AK3 C5 H10 SING N N 41 A1AK3 C7 H12 SING N N 42 A1AK3 C7 H11 SING N N 43 A1AK3 C8 H13 SING N N 44 A1AK3 C8 H14 SING N N 45 A1AK3 C17 H21 SING N N 46 A1AK3 C20 H1 SING N N 47 A1AK3 C21 H24 SING N N 48 A1AK3 C21 H23 SING N N 49 A1AK3 C22 H25 SING N N 50 A1AK3 C22 H26 SING N N 51 A1AK3 C22 H27 SING N N 52 A1AK3 C24 H31 SING N N 53 A1AK3 C24 H30 SING N N 54 A1AK3 C23 H29 SING N N 55 A1AK3 C23 H28 SING N N 56 A1AK3 N5 H2 SING N N 57 A1AK3 C14 H20 SING N N 58 A1AK3 N H19 SING N N 59 A1AK3 C3 H SING N N 60 A1AK3 C1 H6 SING N N 61 A1AK3 C2 H7 SING N N 62 A1AK3 C2 H9 SING N N 63 A1AK3 C2 H8 SING N N 64 A1AK3 C H3 SING N N 65 A1AK3 C H4 SING N N 66 A1AK3 C H5 SING N N 67 A1AK3 C12 H18 SING N N 68 A1AK3 C11 H17 SING N N 69 A1AK3 C9 H15 SING N N 70 A1AK3 C9 H16 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AK3 SMILES ACDLabs 12.01 "CN1CCC(C1)NC(=O)c1cc2c([NH]1)ncnc2NC(c1ccc2CCCS(=O)(=O)c2c1)C(C)C" A1AK3 InChI InChI 1.06 "InChI=1S/C25H32N6O3S/c1-15(2)22(17-7-6-16-5-4-10-35(33,34)21(16)11-17)30-24-19-12-20(29-23(19)26-14-27-24)25(32)28-18-8-9-31(3)13-18/h6-7,11-12,14-15,18,22H,4-5,8-10,13H2,1-3H3,(H,28,32)(H2,26,27,29,30)/t18-,22+/m1/s1" A1AK3 InChIKey InChI 1.06 QEVYAPKJBMOYGR-GCJKJVERSA-N A1AK3 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2[nH]c(cc12)C(=O)N[C@H]3CCN(C)C3)c4ccc5CCC[S](=O)(=O)c5c4" A1AK3 SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2[nH]c(cc12)C(=O)N[CH]3CCN(C)C3)c4ccc5CCC[S](=O)(=O)c5c4" A1AK3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4cc([nH]c4ncn3)C(=O)N[C@H]5CCN(C5)C" A1AK3 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4cc([nH]c4ncn3)C(=O)NC5CCN(C5)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AK3 "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-N-[(3R)-1-methylpyrrolidin-3-yl]-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide" A1AK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]amino]-~{N}-[(3~{S})-1-methylpyrrolidin-3-yl]-7~{H}-pyrrolo[2,3-d]pyrimidine-6-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AK3 "Create component" 2024-04-05 RCSB A1AK3 "Initial release" 2024-05-15 RCSB #