data_A1AK9 # _chem_comp.id A1AK9 _chem_comp.name "5-(4-methoxyphenyl)-3-[(3S)-pyrrolidin-3-yl]-1,2,4-oxadiazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-08 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.277 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AK9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AK9 C4 C1 C 0 1 Y N N N N N 49.287 2.315 -21.974 3.360 1.490 0.084 C4 A1AK9 1 A1AK9 C5 C2 C 0 1 Y N N N N N 49.460 2.703 -23.291 1.997 1.288 0.076 C5 A1AK9 2 A1AK9 C6 C3 C 0 1 Y N N N N N 50.298 1.984 -24.143 1.486 -0.010 0.005 C6 A1AK9 3 A1AK9 C7 C4 C 0 1 Y N N N N N 50.961 0.865 -23.641 2.360 -1.099 -0.059 C7 A1AK9 4 A1AK9 C8 C5 C 0 1 Y N N N N N 50.793 0.473 -22.325 3.721 -0.888 -0.050 C8 A1AK9 5 A1AK9 N12 N1 N 0 1 Y N N N N N 50.959 2.116 -27.680 -1.805 -1.238 -0.055 N12 A1AK9 6 A1AK9 C15 C6 C 0 1 N N N N N N 51.406 4.748 -29.281 -4.254 0.276 -1.222 C15 A1AK9 7 A1AK9 C1 C7 C 0 1 N N N N N N 50.286 -0.162 -19.539 6.400 -0.552 -0.043 C1 A1AK9 8 A1AK9 O2 O1 O 0 1 N N N N N N 49.694 0.976 -20.165 5.568 0.608 0.023 O2 A1AK9 9 A1AK9 C3 C8 C 0 1 Y N N N N N 49.954 1.200 -21.490 4.226 0.404 0.021 C3 A1AK9 10 A1AK9 C9 C9 C 0 1 Y N N N N N 50.464 2.388 -25.543 0.026 -0.232 -0.004 C9 A1AK9 11 A1AK9 N10 N2 N 0 1 Y N N N N N 50.087 3.494 -26.110 -0.914 0.697 0.051 N10 A1AK9 12 A1AK9 C11 C10 C 0 1 Y N N N N N 50.409 3.283 -27.425 -2.078 0.031 0.017 C11 A1AK9 13 A1AK9 O13 O2 O 0 1 Y N N N N N 51.001 1.500 -26.400 -0.605 -1.414 -0.068 O13 A1AK9 14 A1AK9 C14 C11 C 0 1 N N S N N N 50.159 4.294 -28.486 -3.455 0.644 0.055 C14 A1AK9 15 A1AK9 C16 C12 C 0 1 N N N N N N 51.375 4.064 -30.631 -5.715 0.374 -0.716 C16 A1AK9 16 A1AK9 N17 N3 N 0 1 N N N N N N 50.102 3.286 -30.620 -5.670 -0.141 0.669 N17 A1AK9 17 A1AK9 C18 C13 C 0 1 N N N N N N 49.201 3.866 -29.574 -4.299 0.021 1.186 C18 A1AK9 18 A1AK9 H1 H1 H 0 1 N N N N N N 48.634 2.879 -21.325 3.756 2.493 0.135 H1 A1AK9 19 A1AK9 H2 H2 H 0 1 N N N N N N 48.940 3.573 -23.664 1.325 2.131 0.126 H2 A1AK9 20 A1AK9 H3 H3 H 0 1 N N N N N N 51.614 0.297 -24.287 1.968 -2.104 -0.114 H3 A1AK9 21 A1AK9 H4 H4 H 0 1 N N N N N N 51.313 -0.396 -21.948 4.397 -1.729 -0.100 H4 A1AK9 22 A1AK9 H5 H5 H 0 1 N N N N N N 52.319 4.462 -28.738 -4.069 0.995 -2.020 H5 A1AK9 23 A1AK9 H6 H6 H 0 1 N N N N N N 51.386 5.840 -29.415 -4.022 -0.737 -1.550 H6 A1AK9 24 A1AK9 H7 H7 H 0 1 N N N N N N 49.981 -0.200 -18.483 6.188 -1.098 -0.963 H7 A1AK9 25 A1AK9 H8 H8 H 0 1 N N N N N N 49.952 -1.077 -20.050 7.447 -0.249 -0.034 H8 A1AK9 26 A1AK9 H9 H9 H 0 1 N N N N N N 51.382 -0.086 -19.602 6.200 -1.193 0.815 H9 A1AK9 27 A1AK9 H10 H10 H 0 1 N N N N N N 49.737 5.189 -28.006 -3.390 1.726 0.170 H10 A1AK9 28 A1AK9 H11 H11 H 0 1 N N N N N N 52.240 3.395 -30.749 -6.050 1.411 -0.724 H11 A1AK9 29 A1AK9 H12 H12 H 0 1 N N N N N N 51.372 4.805 -31.444 -6.372 -0.243 -1.329 H12 A1AK9 30 A1AK9 H13 H13 H 0 1 N N N N N N 49.662 3.346 -31.516 -6.337 0.338 1.256 H13 A1AK9 31 A1AK9 H15 H15 H 0 1 N N N N N N 48.643 4.728 -29.969 -3.889 -0.951 1.462 H15 A1AK9 32 A1AK9 H16 H16 H 0 1 N N N N N N 48.493 3.111 -29.201 -4.305 0.682 2.052 H16 A1AK9 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AK9 C16 N17 SING N N 1 A1AK9 C16 C15 SING N N 2 A1AK9 N17 C18 SING N N 3 A1AK9 C18 C14 SING N N 4 A1AK9 C15 C14 SING N N 5 A1AK9 C14 C11 SING N N 6 A1AK9 N12 C11 DOUB Y N 7 A1AK9 N12 O13 SING Y N 8 A1AK9 C11 N10 SING Y N 9 A1AK9 O13 C9 SING Y N 10 A1AK9 N10 C9 DOUB Y N 11 A1AK9 C9 C6 SING N N 12 A1AK9 C6 C7 DOUB Y N 13 A1AK9 C6 C5 SING Y N 14 A1AK9 C7 C8 SING Y N 15 A1AK9 C5 C4 DOUB Y N 16 A1AK9 C8 C3 DOUB Y N 17 A1AK9 C4 C3 SING Y N 18 A1AK9 C3 O2 SING N N 19 A1AK9 O2 C1 SING N N 20 A1AK9 C4 H1 SING N N 21 A1AK9 C5 H2 SING N N 22 A1AK9 C7 H3 SING N N 23 A1AK9 C8 H4 SING N N 24 A1AK9 C15 H5 SING N N 25 A1AK9 C15 H6 SING N N 26 A1AK9 C1 H7 SING N N 27 A1AK9 C1 H8 SING N N 28 A1AK9 C1 H9 SING N N 29 A1AK9 C14 H10 SING N N 30 A1AK9 C16 H11 SING N N 31 A1AK9 C16 H12 SING N N 32 A1AK9 N17 H13 SING N N 33 A1AK9 C18 H15 SING N N 34 A1AK9 C18 H16 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AK9 SMILES ACDLabs 12.01 "COc1ccc(cc1)c1nc(no1)C1CNCC1" A1AK9 InChI InChI 1.06 "InChI=1S/C13H15N3O2/c1-17-11-4-2-9(3-5-11)13-15-12(16-18-13)10-6-7-14-8-10/h2-5,10,14H,6-8H2,1H3/t10-/m0/s1" A1AK9 InChIKey InChI 1.06 LCPXGPRZJSMWFF-JTQLQIEISA-N A1AK9 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)c2onc(n2)[C@H]3CCNC3" A1AK9 SMILES CACTVS 3.385 "COc1ccc(cc1)c2onc(n2)[CH]3CCNC3" A1AK9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2nc(no2)[C@H]3CCNC3" A1AK9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2nc(no2)C3CCNC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AK9 "SYSTEMATIC NAME" ACDLabs 12.01 "5-(4-methoxyphenyl)-3-[(3S)-pyrrolidin-3-yl]-1,2,4-oxadiazole" A1AK9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-(4-methoxyphenyl)-3-[(3~{S})-pyrrolidin-3-yl]-1,2,4-oxadiazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AK9 "Create component" 2024-04-08 RCSB A1AK9 "Initial release" 2024-06-12 RCSB #