data_A1AKD # _chem_comp.id A1AKD _chem_comp.name "(3R)-3-(propan-2-yl)-4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-03 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AKD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GZA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AKD N1 N1 N 0 1 N N N N N N -0.938 14.017 -2.591 -0.426 -0.491 0.018 N1 A1AKD 1 A1AKD N3 N2 N 0 1 Y N N N N N -0.938 15.075 1.451 2.983 1.720 -0.533 N3 A1AKD 2 A1AKD C4 C1 C 0 1 N N N N N N -0.087 11.842 -3.308 -2.837 -0.579 -0.310 C4 A1AKD 3 A1AKD C5 C2 C 0 1 N N N N N N -2.052 12.711 -4.402 -1.519 -2.654 -0.275 C5 A1AKD 4 A1AKD C6 C3 C 0 1 N N N N N N -2.179 13.788 -3.333 -0.377 -1.750 -0.744 C6 A1AKD 5 A1AKD C7 C4 C 0 1 Y N N N N N -0.970 14.506 -1.281 0.731 0.243 -0.163 C7 A1AKD 6 A1AKD C8 C5 C 0 1 Y N N N N N 0.087 14.581 0.742 1.785 2.200 -0.786 C8 A1AKD 7 A1AKD C10 C6 C 0 1 Y N N N N N -4.039 16.005 0.067 3.801 -1.529 0.676 C10 A1AKD 8 A1AKD O O1 O 0 1 N N N N N N 0.567 10.965 -2.788 -3.925 -0.045 -0.285 O A1AKD 9 A1AKD N N3 N 0 1 N N N N N N -1.236 11.603 -3.947 -2.778 -1.914 -0.285 N A1AKD 10 A1AKD C3 C7 C 0 1 N N R N N N 0.242 13.301 -3.096 -1.610 0.288 -0.368 C3 A1AKD 11 A1AKD C1 C8 C 0 1 N N N N N N 1.058 13.896 -4.254 -1.777 1.468 0.592 C1 A1AKD 12 A1AKD C2 C9 C 0 1 N N N N N N 2.464 13.325 -4.239 -2.904 2.375 0.095 C2 A1AKD 13 A1AKD C C10 C 0 1 N N N N N N 1.063 15.400 -4.164 -2.121 0.945 1.988 C A1AKD 14 A1AKD C12 C11 C 0 1 Y N N N N N -2.123 15.117 -0.682 1.988 -0.312 0.121 C12 A1AKD 15 A1AKD C11 C12 C 0 1 Y N N N N N -3.422 15.582 -1.069 2.462 -1.605 0.611 C11 A1AKD 16 A1AKD N4 N4 N 0 1 Y N N N N N -3.212 15.842 1.150 4.216 -0.288 0.265 N4 A1AKD 17 A1AKD C9 C13 C 0 1 Y N N N N N -2.024 15.322 0.704 3.136 0.476 -0.081 C9 A1AKD 18 A1AKD N2 N5 N 0 1 Y N N N N N 0.137 14.236 -0.566 0.681 1.495 -0.611 N2 A1AKD 19 A1AKD H10 H1 H 0 1 N N N N N N -1.590 13.150 -5.299 -1.598 -3.512 -0.942 H10 A1AKD 20 A1AKD H11 H2 H 0 1 N N N N N N -3.055 12.336 -4.653 -1.311 -3.000 0.738 H11 A1AKD 21 A1AKD H12 H3 H 0 1 N N N N N N -2.474 14.730 -3.819 -0.491 -1.538 -1.807 H12 A1AKD 22 A1AKD H13 H4 H 0 1 N N N N N N -2.960 13.483 -2.621 0.578 -2.246 -0.568 H13 A1AKD 23 A1AKD H14 H5 H 0 1 N N N N N N 1.004 14.438 1.294 1.699 3.213 -1.151 H14 A1AKD 24 A1AKD H15 H6 H 0 1 N N N N N N -5.039 16.412 0.111 4.454 -2.325 1.003 H15 A1AKD 25 A1AKD H9 H7 H 0 1 N N N N N N -1.532 10.662 -4.111 -3.609 -2.415 -0.273 H9 A1AKD 26 A1AKD H8 H8 H 0 1 N N N N N N 0.946 13.298 -2.251 -1.481 0.664 -1.382 H8 A1AKD 27 A1AKD H4 H9 H 0 1 N N N N N N 0.575 13.604 -5.198 -0.847 2.034 0.636 H4 A1AKD 28 A1AKD H6 H10 H 0 1 N N N N N N 2.416 12.228 -4.306 -3.858 1.856 0.193 H6 A1AKD 29 A1AKD H7 H11 H 0 1 N N N N N N 3.029 13.720 -5.096 -2.924 3.288 0.690 H7 A1AKD 30 A1AKD H5 H12 H 0 1 N N N N N N 2.967 13.613 -3.304 -2.733 2.626 -0.951 H5 A1AKD 31 A1AKD H1 H13 H 0 1 N N N N N N 0.028 15.772 -4.178 -3.051 0.378 1.945 H1 A1AKD 32 A1AKD H2 H14 H 0 1 N N N N N N 1.551 15.710 -3.228 -1.318 0.298 2.343 H2 A1AKD 33 A1AKD H3 H15 H 0 1 N N N N N N 1.614 15.817 -5.020 -2.239 1.785 2.672 H3 A1AKD 34 A1AKD H16 H16 H 0 1 N N N N N N -3.831 15.594 -2.068 1.852 -2.458 0.872 H16 A1AKD 35 A1AKD H H17 H 0 1 N N N N N N -3.437 16.064 2.099 5.140 0.004 0.225 H A1AKD 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AKD C C1 SING N N 1 A1AKD C2 C1 SING N N 2 A1AKD C1 C3 SING N N 3 A1AKD C3 C4 SING N N 4 A1AKD C4 O DOUB N N 5 A1AKD N C4 SING N N 6 A1AKD C5 N SING N N 7 A1AKD C6 C5 SING N N 8 A1AKD N1 C6 SING N N 9 A1AKD C3 N1 SING N N 10 A1AKD C7 N1 SING N N 11 A1AKD C7 N2 DOUB Y N 12 A1AKD N2 C8 SING Y N 13 A1AKD C8 N3 DOUB Y N 14 A1AKD N3 C9 SING Y N 15 A1AKD C9 N4 SING Y N 16 A1AKD N4 C10 SING Y N 17 A1AKD C10 C11 DOUB Y N 18 A1AKD C11 C12 SING Y N 19 A1AKD C12 C7 SING Y N 20 A1AKD C9 C12 DOUB Y N 21 A1AKD C5 H10 SING N N 22 A1AKD C5 H11 SING N N 23 A1AKD C6 H12 SING N N 24 A1AKD C6 H13 SING N N 25 A1AKD C8 H14 SING N N 26 A1AKD C10 H15 SING N N 27 A1AKD N H9 SING N N 28 A1AKD C3 H8 SING N N 29 A1AKD C1 H4 SING N N 30 A1AKD C2 H6 SING N N 31 A1AKD C2 H7 SING N N 32 A1AKD C2 H5 SING N N 33 A1AKD C H1 SING N N 34 A1AKD C H2 SING N N 35 A1AKD C H3 SING N N 36 A1AKD C11 H16 SING N N 37 A1AKD N4 H SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AKD SMILES ACDLabs 12.01 "CC(C)C1C(=O)NCCN1c1ncnc2[NH]ccc12" A1AKD InChI InChI 1.06 "InChI=1S/C13H17N5O/c1-8(2)10-13(19)15-5-6-18(10)12-9-3-4-14-11(9)16-7-17-12/h3-4,7-8,10H,5-6H2,1-2H3,(H,15,19)(H,14,16,17)/t10-/m1/s1" A1AKD InChIKey InChI 1.06 CQFMTHKPYLBMFG-SNVBAGLBSA-N A1AKD SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H]1N(CCNC1=O)c2ncnc3[nH]ccc23" A1AKD SMILES CACTVS 3.385 "CC(C)[CH]1N(CCNC1=O)c2ncnc3[nH]ccc23" A1AKD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H]1C(=O)NCCN1c2c3cc[nH]c3ncn2" A1AKD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1C(=O)NCCN1c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AKD "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-3-(propan-2-yl)-4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-one" A1AKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-3-propan-2-yl-4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AKD "Create component" 2024-04-03 RCSB A1AKD "Initial release" 2024-05-15 RCSB #