data_A1AKM # _chem_comp.id A1AKM _chem_comp.name "N-[4-fluoro-5-({(2S,4S)-2-methyl-4-[(5-methyl-1,2,4-oxadiazol-3-yl)methoxy]piperidin-1-yl}methyl)-1,3-thiazol-2-yl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H22 F N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-04 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AKM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BA8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AKM O1 O1 O 0 1 N N N N N N -48.230 45.251 -17.752 3.483 -0.276 0.024 O1 A1AKM 1 A1AKM C7 C1 C 0 1 N N N N N N -50.438 43.584 -13.773 0.058 -3.722 -0.726 C7 A1AKM 2 A1AKM O2 O2 O 0 1 Y N N N N N -45.265 48.175 -18.483 6.783 2.257 -0.580 O2 A1AKM 3 A1AKM C6 C2 C 0 1 N N S N N N -50.637 43.640 -15.276 0.534 -2.597 0.194 C6 A1AKM 4 A1AKM C1 C3 C 0 1 N N N N N N -58.433 43.229 -15.416 -7.256 3.253 -0.245 C1 A1AKM 5 A1AKM N1 N1 N 0 1 Y N N N N N -54.667 41.025 -17.234 -4.466 0.001 -0.748 N1 A1AKM 6 A1AKM C5 C4 C 0 1 N N N N N N -51.396 41.191 -15.426 -1.793 -2.107 0.646 C5 A1AKM 7 A1AKM C4 C5 C 0 1 Y N N N N N -52.752 41.293 -15.915 -2.876 -1.093 0.377 C4 A1AKM 8 A1AKM C3 C6 C 0 1 Y N N N N N -53.337 40.711 -17.035 -3.566 -0.965 -0.760 C3 A1AKM 9 A1AKM C2 C7 C 0 1 Y N N N N N -55.091 41.848 -16.306 -4.568 0.695 0.342 C2 A1AKM 10 A1AKM F F1 F 0 1 N N N N N N -52.757 39.909 -17.935 -3.361 -1.760 -1.833 F A1AKM 11 A1AKM S S1 S 0 1 Y N N N N N -53.927 42.275 -15.106 -3.453 0.129 1.507 S A1AKM 12 A1AKM N N2 N 0 1 N N N N N N -56.395 42.297 -16.303 -5.456 1.747 0.535 N A1AKM 13 A1AKM C C8 C 0 1 N N N N N N -56.942 43.129 -15.384 -6.294 2.112 -0.454 C A1AKM 14 A1AKM O O3 O 0 1 N N N N N N -56.266 43.721 -14.556 -6.274 1.523 -1.514 O A1AKM 15 A1AKM N2 N3 N 0 1 N N N N N N -50.477 42.273 -15.922 -0.492 -1.548 0.256 N2 A1AKM 16 A1AKM C11 C9 C 0 1 N N N N N N -50.573 42.400 -17.418 -0.091 -0.466 1.165 C11 A1AKM 17 A1AKM C10 C10 C 0 1 N N N N N N -49.372 43.189 -17.925 1.192 0.187 0.647 C10 A1AKM 18 A1AKM C9 C11 C 0 1 N N S N N N -49.433 44.586 -17.358 2.298 -0.868 0.561 C9 A1AKM 19 A1AKM C8 C12 C 0 1 N N N N N N -49.531 44.575 -15.842 1.836 -2.007 -0.353 C8 A1AKM 20 A1AKM C12 C13 C 0 1 N N N N N N -48.425 46.496 -18.414 4.356 0.275 1.012 C12 A1AKM 21 A1AKM C13 C14 C 0 1 Y N N N N N -47.039 47.010 -18.582 5.566 0.869 0.338 C13 A1AKM 22 A1AKM N4 N4 N 0 1 Y N N N N N -46.609 48.113 -18.045 5.689 2.093 -0.083 N4 A1AKM 23 A1AKM C14 C15 C 0 1 Y N N N N N -45.062 47.081 -19.230 7.483 1.120 -0.522 C14 A1AKM 24 A1AKM N3 N5 N 0 1 Y N N N N N -46.112 46.326 -19.325 6.716 0.230 0.061 N3 A1AKM 25 A1AKM C15 C16 C 0 1 N N N N N N -43.711 46.886 -19.804 8.885 0.903 -1.030 C15 A1AKM 26 A1AKM H9 H1 H 0 1 N N N N N N -50.562 44.591 -13.348 -0.238 -3.303 -1.689 H9 A1AKM 27 A1AKM H10 H2 H 0 1 N N N N N N -51.181 42.905 -13.330 0.867 -4.437 -0.875 H10 A1AKM 28 A1AKM H8 H3 H 0 1 N N N N N N -49.426 43.215 -13.551 -0.795 -4.227 -0.273 H8 A1AKM 29 A1AKM H7 H4 H 0 1 N N N N N N -51.628 44.055 -15.511 0.707 -2.995 1.194 H7 A1AKM 30 A1AKM H1 H5 H 0 1 N N N N N N -58.774 43.892 -14.607 -7.129 3.656 0.760 H1 A1AKM 31 A1AKM H2 H6 H 0 1 N N N N N N -58.752 43.640 -16.385 -7.058 4.035 -0.978 H2 A1AKM 32 A1AKM H H7 H 0 1 N N N N N N -58.870 42.229 -15.280 -8.278 2.894 -0.365 H A1AKM 33 A1AKM H5 H8 H 0 1 N N N N N N -50.988 40.220 -15.743 -1.781 -2.352 1.708 H5 A1AKM 34 A1AKM H4 H9 H 0 1 N N N N N N -51.421 41.237 -14.327 -1.989 -3.009 0.067 H4 A1AKM 35 A1AKM H3 H10 H 0 1 N N N N N N -56.988 41.981 -17.043 -5.471 2.219 1.383 H3 A1AKM 36 A1AKM H16 H12 H 0 1 N N N N N N -51.501 42.928 -17.685 -0.884 0.280 1.214 H16 A1AKM 37 A1AKM H17 H13 H 0 1 N N N N N N -50.576 41.399 -17.874 0.086 -0.874 2.160 H17 A1AKM 38 A1AKM H14 H14 H 0 1 N N N N N N -48.443 42.698 -17.599 1.013 0.608 -0.343 H14 A1AKM 39 A1AKM H15 H15 H 0 1 N N N N N N -49.397 43.235 -19.024 1.498 0.980 1.330 H15 A1AKM 40 A1AKM H13 H16 H 0 1 N N N N N N -50.310 45.106 -17.771 2.506 -1.260 1.557 H13 A1AKM 41 A1AKM H12 H17 H 0 1 N N N N N N -48.562 44.246 -15.437 2.602 -2.782 -0.384 H12 A1AKM 42 A1AKM H11 H18 H 0 1 N N N N N N -49.741 45.600 -15.503 1.666 -1.621 -1.358 H11 A1AKM 43 A1AKM H18 H19 H 0 1 N N N N N N -49.028 47.180 -17.799 3.831 1.053 1.567 H18 A1AKM 44 A1AKM H19 H20 H 0 1 N N N N N N -48.914 46.352 -19.389 4.671 -0.511 1.698 H19 A1AKM 45 A1AKM H22 H21 H 0 1 N N N N N N -43.686 45.945 -20.374 9.262 1.829 -1.464 H22 A1AKM 46 A1AKM H20 H22 H 0 1 N N N N N N -43.472 47.726 -20.473 9.528 0.601 -0.203 H20 A1AKM 47 A1AKM H21 H23 H 0 1 N N N N N N -42.971 46.842 -18.992 8.879 0.121 -1.789 H21 A1AKM 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AKM C15 C14 SING N N 1 A1AKM N3 C14 DOUB Y N 2 A1AKM N3 C13 SING Y N 3 A1AKM C14 O2 SING Y N 4 A1AKM C13 C12 SING N N 5 A1AKM C13 N4 DOUB Y N 6 A1AKM O2 N4 SING Y N 7 A1AKM C12 O1 SING N N 8 A1AKM F C3 SING N N 9 A1AKM C10 C11 SING N N 10 A1AKM C10 C9 SING N N 11 A1AKM O1 C9 SING N N 12 A1AKM C11 N2 SING N N 13 A1AKM C9 C8 SING N N 14 A1AKM N1 C3 SING Y N 15 A1AKM N1 C2 DOUB Y N 16 A1AKM C3 C4 DOUB Y N 17 A1AKM C2 N SING N N 18 A1AKM C2 S SING Y N 19 A1AKM N C SING N N 20 A1AKM N2 C5 SING N N 21 A1AKM N2 C6 SING N N 22 A1AKM C4 C5 SING N N 23 A1AKM C4 S SING Y N 24 A1AKM C8 C6 SING N N 25 A1AKM C1 C SING N N 26 A1AKM C O DOUB N N 27 A1AKM C6 C7 SING N N 28 A1AKM C7 H9 SING N N 29 A1AKM C7 H10 SING N N 30 A1AKM C7 H8 SING N N 31 A1AKM C6 H7 SING N N 32 A1AKM C1 H1 SING N N 33 A1AKM C1 H2 SING N N 34 A1AKM C1 H SING N N 35 A1AKM C5 H5 SING N N 36 A1AKM C5 H4 SING N N 37 A1AKM N H3 SING N N 38 A1AKM C11 H16 SING N N 39 A1AKM C11 H17 SING N N 40 A1AKM C10 H14 SING N N 41 A1AKM C10 H15 SING N N 42 A1AKM C9 H13 SING N N 43 A1AKM C8 H12 SING N N 44 A1AKM C8 H11 SING N N 45 A1AKM C12 H18 SING N N 46 A1AKM C12 H19 SING N N 47 A1AKM C15 H22 SING N N 48 A1AKM C15 H20 SING N N 49 A1AKM C15 H21 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AKM SMILES ACDLabs 12.01 "Fc1nc(NC(=O)C)sc1CN1CCC(OCc2nc(C)on2)CC1C" A1AKM InChI InChI 1.06 "InChI=1S/C16H22FN5O3S/c1-9-6-12(24-8-14-19-11(3)25-21-14)4-5-22(9)7-13-15(17)20-16(26-13)18-10(2)23/h9,12H,4-8H2,1-3H3,(H,18,20,23)/t9-,12-/m0/s1" A1AKM InChIKey InChI 1.06 FRVXHWNHGWUTQO-CABZTGNLSA-N A1AKM SMILES_CANONICAL CACTVS 3.385 "C[C@H]1C[C@H](CCN1Cc2sc(NC(C)=O)nc2F)OCc3noc(C)n3" A1AKM SMILES CACTVS 3.385 "C[CH]1C[CH](CCN1Cc2sc(NC(C)=O)nc2F)OCc3noc(C)n3" A1AKM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc(no1)CO[C@H]2CCN([C@H](C2)C)Cc3c(nc(s3)NC(=O)C)F" A1AKM SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc(no1)COC2CCN(C(C2)C)Cc3c(nc(s3)NC(=O)C)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AKM "SYSTEMATIC NAME" ACDLabs 12.01 "N-[4-fluoro-5-({(2S,4S)-2-methyl-4-[(5-methyl-1,2,4-oxadiazol-3-yl)methoxy]piperidin-1-yl}methyl)-1,3-thiazol-2-yl]acetamide" A1AKM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[4-fluoranyl-5-[[(2~{S},4~{S})-2-methyl-4-[(5-methyl-1,2,4-oxadiazol-3-yl)methoxy]piperidin-1-yl]methyl]-1,3-thiazol-2-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AKM "Create component" 2024-04-04 RCSB A1AKM "Initial release" 2025-01-15 RCSB #