data_A1AKU # _chem_comp.id A1AKU _chem_comp.name "(4S)-4-hydroxy-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-D-proline" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H12 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-04 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.238 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AKU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GZN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AKU N1 N1 N 0 1 Y N N N N N -0.017 14.293 -0.242 -0.091 1.690 -0.446 N1 A1AKU 1 A1AKU N3 N2 N 0 1 Y N N N N N -3.404 15.727 1.511 -3.674 -0.033 0.348 N3 A1AKU 2 A1AKU C4 C1 C 0 1 N N N N N N -2.329 13.762 -3.139 2.073 1.035 0.902 C4 A1AKU 3 A1AKU C5 C2 C 0 1 Y N N N N N -1.158 14.455 -0.948 -0.186 0.634 0.355 C5 A1AKU 4 A1AKU C6 C3 C 0 1 Y N N N N N -0.056 14.636 1.056 -1.163 2.215 -1.012 C6 A1AKU 5 A1AKU C7 C4 C 0 1 Y N N N N N -2.208 15.240 1.051 -2.571 0.678 -0.036 C7 A1AKU 6 A1AKU C8 C5 C 0 1 Y N N N N N -4.267 15.819 0.442 -3.307 -1.052 1.188 C8 A1AKU 7 A1AKU C10 C6 C 0 1 Y N N N N N -2.337 14.974 -0.321 -1.458 0.087 0.587 C10 A1AKU 8 A1AKU O O1 O 0 1 N N N N N N 0.164 11.347 -2.179 0.231 -0.505 -1.709 O A1AKU 9 A1AKU C C7 C 0 1 N N N N N N 0.776 12.388 -2.378 0.452 -1.400 -0.927 C A1AKU 10 A1AKU O1 O2 O 0 1 N N N N N N 2.002 12.528 -2.159 -0.095 -2.610 -1.121 O1 A1AKU 11 A1AKU C1 C8 C 0 1 N N R N N N 0.105 13.614 -2.971 1.341 -1.157 0.265 C1 A1AKU 12 A1AKU N N3 N 0 1 N N N N N N -1.140 14.005 -2.295 0.939 0.087 0.945 N A1AKU 13 A1AKU C3 C9 C 0 1 N N R N N N -1.799 12.868 -4.249 3.329 0.142 0.741 C3 A1AKU 14 A1AKU O2 O3 O 0 1 N N N N N N -1.817 11.477 -3.891 4.397 0.866 0.128 O2 A1AKU 15 A1AKU C2 C10 C 0 1 N N N N N N -0.357 13.337 -4.413 2.802 -0.974 -0.198 C2 A1AKU 16 A1AKU C9 C11 C 0 1 Y N N N N N -3.664 15.376 -0.692 -1.976 -1.032 1.372 C9 A1AKU 17 A1AKU N2 N4 N 0 1 Y N N N N N -1.080 15.111 1.772 -2.373 1.735 -0.823 N2 A1AKU 18 A1AKU H2 H1 H 0 1 N N N N N N -3.613 15.973 2.458 -4.583 0.155 0.066 H2 A1AKU 19 A1AKU H7 H2 H 0 1 N N N N N N -2.721 14.705 -3.547 1.974 1.707 0.049 H7 A1AKU 20 A1AKU H8 H3 H 0 1 N N N N N N -3.119 13.253 -2.568 2.127 1.605 1.829 H8 A1AKU 21 A1AKU H9 H4 H 0 1 N N N N N N 0.870 14.510 1.597 -1.041 3.073 -1.656 H9 A1AKU 22 A1AKU H10 H5 H 0 1 N N N N N N -5.280 16.191 0.497 -3.985 -1.763 1.636 H10 A1AKU 23 A1AKU H3 H6 H 0 1 N N N N N N 2.359 11.714 -1.824 -0.659 -2.718 -1.900 H3 A1AKU 24 A1AKU H H7 H 0 1 N N N N N N 0.814 14.455 -2.974 1.274 -1.998 0.955 H A1AKU 25 A1AKU H1 H8 H 0 1 N N N N N N -2.360 13.048 -5.178 3.640 -0.270 1.701 H1 A1AKU 26 A1AKU H6 H9 H 0 1 N N N N N N -1.128 11.303 -3.261 4.695 1.633 0.636 H6 A1AKU 27 A1AKU H4 H10 H 0 1 N N N N N N -0.309 14.252 -5.022 3.368 -1.895 -0.059 H4 A1AKU 28 A1AKU H5 H11 H 0 1 N N N N N N 0.259 12.554 -4.878 2.838 -0.651 -1.239 H5 A1AKU 29 A1AKU H11 H12 H 0 1 N N N N N N -4.098 15.334 -1.680 -1.401 -1.711 1.984 H11 A1AKU 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AKU C O DOUB N N 1 A1AKU O1 C SING N N 2 A1AKU C1 C SING N N 3 A1AKU C1 C2 SING N N 4 A1AKU C2 C3 SING N N 5 A1AKU O2 C3 SING N N 6 A1AKU C3 C4 SING N N 7 A1AKU C4 N SING N N 8 A1AKU N C1 SING N N 9 A1AKU C5 N SING N N 10 A1AKU C5 N1 DOUB Y N 11 A1AKU N1 C6 SING Y N 12 A1AKU C6 N2 DOUB Y N 13 A1AKU N2 C7 SING Y N 14 A1AKU C7 N3 SING Y N 15 A1AKU N3 C8 SING Y N 16 A1AKU C8 C9 DOUB Y N 17 A1AKU C9 C10 SING Y N 18 A1AKU C10 C5 SING Y N 19 A1AKU C7 C10 DOUB Y N 20 A1AKU N3 H2 SING N N 21 A1AKU C4 H7 SING N N 22 A1AKU C4 H8 SING N N 23 A1AKU C6 H9 SING N N 24 A1AKU C8 H10 SING N N 25 A1AKU O1 H3 SING N N 26 A1AKU C1 H SING N N 27 A1AKU C3 H1 SING N N 28 A1AKU O2 H6 SING N N 29 A1AKU C2 H4 SING N N 30 A1AKU C2 H5 SING N N 31 A1AKU C9 H11 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AKU SMILES ACDLabs 12.01 "O=C(O)C1CC(O)CN1c1ncnc2[NH]ccc12" A1AKU InChI InChI 1.06 "InChI=1S/C11H12N4O3/c16-6-3-8(11(17)18)15(4-6)10-7-1-2-12-9(7)13-5-14-10/h1-2,5-6,8,16H,3-4H2,(H,17,18)(H,12,13,14)/t6-,8-/m0/s1" A1AKU InChIKey InChI 1.06 NYPLSKIXLZGUBU-XPUUQOCRSA-N A1AKU SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1C[C@@H](N(C1)c2ncnc3[nH]ccc23)C(O)=O" A1AKU SMILES CACTVS 3.385 "O[CH]1C[CH](N(C1)c2ncnc3[nH]ccc23)C(O)=O" A1AKU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3C[C@@H](C[C@@H]3C(=O)O)O" A1AKU SMILES "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CC(CC3C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AKU "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-4-hydroxy-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-D-proline" A1AKU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{R})-4-oxidanyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AKU "Create component" 2024-04-04 RCSB A1AKU "Initial release" 2024-05-15 RCSB #