data_A1AL1 # _chem_comp.id A1AL1 _chem_comp.name "7-{(1S)-1-[(6-amino-5-chloropyrimidin-4-yl)amino]-2-methylpropyl}-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H21 Cl N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-10 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.892 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AL1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H06 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AL1 N1 N1 N 0 1 Y N N N N N 4.270 -15.169 15.938 -3.137 -1.453 0.608 N1 A1AL1 1 A1AL1 N3 N2 N 0 1 N N N N N N 8.276 -16.036 16.441 -6.263 1.143 1.025 N3 A1AL1 2 A1AL1 C4 C1 C 0 1 Y N N N N N 4.661 -15.815 17.061 -2.961 -0.207 0.174 C4 A1AL1 3 A1AL1 C5 C2 C 0 1 Y N N N N N 5.248 -14.894 15.062 -4.279 -1.825 1.150 C5 A1AL1 4 A1AL1 C6 C3 C 0 1 Y N N N N N 6.967 -15.801 16.295 -5.194 0.272 0.877 C6 A1AL1 5 A1AL1 C7 C4 C 0 1 Y N N N N N 6.008 -16.107 17.289 -4.004 0.706 0.299 C7 A1AL1 6 A1AL1 C8 C5 C 0 1 Y N N N N N 2.285 -14.517 19.012 0.654 -0.064 -0.567 C8 A1AL1 7 A1AL1 C10 C6 C 0 1 Y N N N N N 1.761 -12.213 19.500 1.985 1.767 -1.330 C10 A1AL1 8 A1AL1 C13 C7 C 0 1 Y N N N N N 2.745 -14.659 20.318 1.753 -0.569 0.096 C13 A1AL1 9 A1AL1 C15 C8 C 0 1 N N N N N N 3.136 -11.157 22.871 5.367 1.809 0.311 C15 A1AL1 10 A1AL1 O1 O1 O 0 1 N N N N N N 2.940 -15.000 23.362 4.041 -0.254 2.316 O1 A1AL1 11 A1AL1 S S1 S 0 1 N N N N N N 3.492 -13.823 22.761 4.319 -0.594 0.965 S A1AL1 12 A1AL1 O O2 O 0 1 N N N N N N 4.921 -13.805 22.544 4.373 -1.950 0.545 O A1AL1 13 A1AL1 C14 C9 C 0 1 N N N N N N 3.018 -12.423 23.708 5.763 0.326 0.356 C14 A1AL1 14 A1AL1 C16 C10 C 0 1 N N N N N N 2.111 -11.137 21.733 4.381 2.026 -0.824 C16 A1AL1 15 A1AL1 C11 C11 C 0 1 Y N N N N N 2.214 -12.325 20.810 3.102 1.258 -0.669 C11 A1AL1 16 A1AL1 C9 C12 C 0 1 Y N N N N N 1.798 -13.273 18.617 0.773 1.114 -1.280 C9 A1AL1 17 A1AL1 C12 C13 C 0 1 Y N N N N N 2.734 -13.575 21.192 2.971 0.094 0.054 C12 A1AL1 18 A1AL1 C3 C14 C 0 1 N N S N N N 2.366 -15.671 18.034 -0.664 -0.794 -0.520 C3 A1AL1 19 A1AL1 C1 C15 C 0 1 N N N N N N 1.375 -16.800 18.367 -0.845 -1.602 -1.807 C1 A1AL1 20 A1AL1 C2 C16 C 0 1 N N N N N N 1.411 -17.904 17.295 0.294 -2.615 -1.938 C2 A1AL1 21 A1AL1 C C17 C 0 1 N N N N N N -0.050 -16.270 18.542 -2.183 -2.343 -1.759 C A1AL1 22 A1AL1 N N3 N 0 1 N N N N N N 3.714 -16.222 17.935 -1.755 0.176 -0.394 N A1AL1 23 A1AL1 CL CL1 CL 0 0 N N N N N N 6.530 -16.811 18.789 -3.826 2.343 -0.252 CL A1AL1 24 A1AL1 N2 N4 N 0 1 Y N N N N N 6.549 -15.188 15.158 -5.290 -0.992 1.286 N2 A1AL1 25 A1AL1 H10 H1 H 0 1 N N N N N N 8.767 -15.701 15.637 -6.185 2.062 0.724 H10 A1AL1 26 A1AL1 H11 H2 H 0 1 N N N N N N 8.610 -15.564 17.257 -7.089 0.833 1.428 H11 A1AL1 27 A1AL1 H9 H3 H 0 1 N N N N N N 4.947 -14.369 14.167 -4.390 -2.844 1.492 H9 A1AL1 28 A1AL1 H13 H4 H 0 1 N N N N N N 1.367 -11.266 19.163 2.072 2.688 -1.888 H13 A1AL1 29 A1AL1 H14 H5 H 0 1 N N N N N N 3.113 -15.617 20.656 1.665 -1.489 0.655 H14 A1AL1 30 A1AL1 H17 H6 H 0 1 N N N N N N 2.968 -10.284 23.518 4.903 2.092 1.255 H17 A1AL1 31 A1AL1 H18 H7 H 0 1 N N N N N N 4.147 -11.106 22.442 6.255 2.419 0.144 H18 A1AL1 32 A1AL1 H16 H8 H 0 1 N N N N N N 1.976 -12.544 24.039 6.029 -0.018 -0.643 H16 A1AL1 33 A1AL1 H15 H9 H 0 1 N N N N N N 3.674 -12.340 24.587 6.605 0.187 1.035 H15 A1AL1 34 A1AL1 H19 H10 H 0 1 N N N N N N 1.103 -11.124 22.173 4.145 3.088 -0.882 H19 A1AL1 35 A1AL1 H20 H11 H 0 1 N N N N N N 2.265 -10.222 21.142 4.855 1.724 -1.758 H20 A1AL1 36 A1AL1 H12 H12 H 0 1 N N N N N N 1.444 -13.136 17.606 -0.082 1.522 -1.798 H12 A1AL1 37 A1AL1 H H13 H 0 1 N N N N N N 2.087 -15.280 17.044 -0.675 -1.467 0.337 H A1AL1 38 A1AL1 H4 H14 H 0 1 N N N N N N 1.687 -17.249 19.321 -0.833 -0.928 -2.664 H4 A1AL1 39 A1AL1 H5 H15 H 0 1 N N N N N N 2.441 -18.273 17.182 0.282 -3.288 -1.081 H5 A1AL1 40 A1AL1 H7 H16 H 0 1 N N N N N N 0.756 -18.733 17.601 0.165 -3.190 -2.855 H7 A1AL1 41 A1AL1 H6 H17 H 0 1 N N N N N N 1.061 -17.495 16.336 1.247 -2.087 -1.972 H6 A1AL1 42 A1AL1 H1 H18 H 0 1 N N N N N N -0.057 -15.483 19.311 -2.995 -1.621 -1.665 H1 A1AL1 43 A1AL1 H2 H19 H 0 1 N N N N N N -0.406 -15.854 17.588 -2.312 -2.918 -2.675 H2 A1AL1 44 A1AL1 H3 H20 H 0 1 N N N N N N -0.711 -17.092 18.853 -2.195 -3.016 -0.902 H3 A1AL1 45 A1AL1 H8 H21 H 0 1 N N N N N N 4.118 -16.098 18.841 -1.634 1.085 -0.709 H8 A1AL1 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AL1 C C1 SING N N 1 A1AL1 C2 C1 SING N N 2 A1AL1 C1 C3 SING N N 3 A1AL1 N C3 SING N N 4 A1AL1 C4 N SING N N 5 A1AL1 C4 N1 DOUB Y N 6 A1AL1 N1 C5 SING Y N 7 A1AL1 C5 N2 DOUB Y N 8 A1AL1 N2 C6 SING Y N 9 A1AL1 N3 C6 SING N N 10 A1AL1 C6 C7 DOUB Y N 11 A1AL1 C7 C4 SING Y N 12 A1AL1 CL C7 SING N N 13 A1AL1 C3 C8 SING N N 14 A1AL1 C8 C9 DOUB Y N 15 A1AL1 C9 C10 SING Y N 16 A1AL1 C10 C11 DOUB Y N 17 A1AL1 C11 C12 SING Y N 18 A1AL1 C13 C12 DOUB Y N 19 A1AL1 C8 C13 SING Y N 20 A1AL1 C12 S SING N N 21 A1AL1 O S DOUB N N 22 A1AL1 S O1 DOUB N N 23 A1AL1 C14 S SING N N 24 A1AL1 C15 C14 SING N N 25 A1AL1 C16 C15 SING N N 26 A1AL1 C11 C16 SING N N 27 A1AL1 N3 H10 SING N N 28 A1AL1 N3 H11 SING N N 29 A1AL1 C5 H9 SING N N 30 A1AL1 C10 H13 SING N N 31 A1AL1 C13 H14 SING N N 32 A1AL1 C15 H17 SING N N 33 A1AL1 C15 H18 SING N N 34 A1AL1 C14 H16 SING N N 35 A1AL1 C14 H15 SING N N 36 A1AL1 C16 H19 SING N N 37 A1AL1 C16 H20 SING N N 38 A1AL1 C9 H12 SING N N 39 A1AL1 C3 H SING N N 40 A1AL1 C1 H4 SING N N 41 A1AL1 C2 H5 SING N N 42 A1AL1 C2 H7 SING N N 43 A1AL1 C2 H6 SING N N 44 A1AL1 C H1 SING N N 45 A1AL1 C H2 SING N N 46 A1AL1 C H3 SING N N 47 A1AL1 N H8 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AL1 SMILES ACDLabs 12.01 "CC(C)C(Nc1ncnc(N)c1Cl)c1ccc2CCCS(=O)(=O)c2c1" A1AL1 InChI InChI 1.06 "InChI=1S/C17H21ClN4O2S/c1-10(2)15(22-17-14(18)16(19)20-9-21-17)12-6-5-11-4-3-7-25(23,24)13(11)8-12/h5-6,8-10,15H,3-4,7H2,1-2H3,(H3,19,20,21,22)/t15-/m0/s1" A1AL1 InChIKey InChI 1.06 JQPBTWZBAYATTH-HNNXBMFYSA-N A1AL1 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc(N)c1Cl)c2ccc3CCC[S](=O)(=O)c3c2" A1AL1 SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc(N)c1Cl)c2ccc3CCC[S](=O)(=O)c3c2" A1AL1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c(c(ncn3)N)Cl" A1AL1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c(c(ncn3)N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AL1 "SYSTEMATIC NAME" ACDLabs 12.01 "7-{(1S)-1-[(6-amino-5-chloropyrimidin-4-yl)amino]-2-methylpropyl}-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione" A1AL1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}4-[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]-5-chloranyl-pyrimidine-4,6-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AL1 "Create component" 2024-04-10 RCSB A1AL1 "Initial release" 2024-05-15 RCSB #