data_A1ALD # _chem_comp.id A1ALD _chem_comp.name "N-{(1E,2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(2-methyl-2H-indazol-4-yl)benzoyl]-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-08 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.608 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALD C13 C1 C 0 1 N N S N N N -16.757 11.637 -26.965 6.584 -0.947 -0.605 C13 A1ALD 1 A1ALD C17 C2 C 0 1 N N N N N N -18.214 11.255 -27.141 6.279 -2.461 -0.549 C17 A1ALD 2 A1ALD C22 C3 C 0 1 Y N N N N N -19.386 15.586 -29.793 -1.632 0.150 -0.465 C22 A1ALD 3 A1ALD C24 C4 C 0 1 Y N N N N N -20.624 14.905 -31.805 -3.195 -1.120 0.835 C24 A1ALD 4 A1ALD C26 C5 C 0 1 Y N N N N N -21.166 16.494 -33.789 -5.552 -1.391 0.076 C26 A1ALD 5 A1ALD C28 C6 C 0 1 Y N N N N N -22.426 17.934 -35.391 -7.031 -3.244 0.551 C28 A1ALD 6 A1ALD C02 C7 C 0 1 N N N N N N -18.751 15.331 -28.440 -0.269 0.686 -0.653 C02 A1ALD 7 A1ALD C04 C8 C 0 1 N N S N N N -18.725 15.689 -25.928 2.042 0.956 0.071 C04 A1ALD 8 A1ALD C05 C9 C 0 1 N N N N N N -19.462 16.527 -24.854 2.111 2.381 0.623 C05 A1ALD 9 A1ALD C06 C10 C 0 1 N N N N N N -19.341 18.045 -25.139 1.201 3.293 -0.202 C06 A1ALD 10 A1ALD C07 C11 C 0 1 N N N N N N -17.881 18.499 -25.003 1.172 4.688 0.425 C07 A1ALD 11 A1ALD C08 C12 C 0 1 N N N N N N -20.237 18.845 -24.182 1.735 3.387 -1.633 C08 A1ALD 12 A1ALD C09 C13 C 0 1 N N N N N N -18.731 14.223 -25.452 3.030 0.085 0.804 C09 A1ALD 13 A1ALD C11 C14 C 0 1 N N S N N N -17.475 12.268 -24.636 5.304 -0.464 1.485 C11 A1ALD 14 A1ALD C12 C15 C 0 1 N N N N N N -16.536 11.397 -25.497 6.672 -0.366 0.807 C12 A1ALD 15 A1ALD C14 C16 C 0 1 N N N N N N -15.964 10.751 -27.905 7.927 -0.864 -1.297 C14 A1ALD 16 A1ALD C16 C17 C 0 1 N N N N N N -18.082 9.732 -27.573 7.114 -2.995 -1.735 C16 A1ALD 17 A1ALD C19 C18 C 0 1 N N N N N N -17.041 12.275 -23.161 5.418 -0.001 2.915 C19 A1ALD 18 A1ALD C23 C19 C 0 1 Y N N N N N -20.061 14.614 -30.547 -1.930 -0.623 0.661 C23 A1ALD 19 A1ALD C25 C20 C 0 1 Y N N N N N -20.569 16.178 -32.423 -4.187 -0.854 -0.112 C25 A1ALD 20 A1ALD C27 C21 C 0 1 Y N N N N N -21.872 17.646 -34.083 -5.752 -2.726 0.371 C27 A1ALD 21 A1ALD C29 C22 C 0 1 Y N N N N N -22.272 17.064 -36.442 -8.149 -2.483 0.450 C29 A1ALD 22 A1ALD C30 C23 C 0 1 Y N N N N N -21.542 15.846 -36.220 -8.055 -1.106 0.158 C30 A1ALD 23 A1ALD C33 C24 C 0 1 N N N N N N -19.968 12.586 -36.869 -8.863 2.361 -0.512 C33 A1ALD 24 A1ALD C34 C25 C 0 1 Y N N N N N -20.358 14.322 -35.045 -6.918 0.820 -0.306 C34 A1ALD 25 A1ALD C35 C26 C 0 1 Y N N N N N -20.995 15.578 -34.900 -6.722 -0.517 -0.039 C35 A1ALD 26 A1ALD C36 C27 C 0 1 Y N N N N N -19.881 17.130 -31.649 -3.891 -0.076 -1.234 C36 A1ALD 27 A1ALD C37 C28 C 0 1 Y N N N N N -19.317 16.855 -30.397 -2.626 0.421 -1.409 C37 A1ALD 28 A1ALD N03 N1 N 0 1 N N N N N N -19.312 15.873 -27.270 0.690 0.425 0.258 N03 A1ALD 29 A1ALD N10 N2 N 0 1 N N N N N N -17.509 13.654 -25.102 4.344 0.383 0.773 N10 A1ALD 30 A1ALD N15 N3 N 0 1 N N N N N N -16.800 9.624 -28.243 8.200 -2.026 -1.916 N15 A1ALD 31 A1ALD N20 N4 N 0 1 N N N N N N -17.593 11.626 -22.226 4.725 0.995 3.322 N20 A1ALD 32 A1ALD N31 N5 N 0 1 Y N N N N N -21.239 14.802 -37.092 -8.929 -0.128 0.000 N31 A1ALD 33 A1ALD N32 N6 N 0 1 Y N N N N N -20.519 13.890 -36.351 -8.238 1.057 -0.280 N32 A1ALD 34 A1ALD O01 O1 O 0 1 N N N N N N -17.717 14.670 -28.310 -0.011 1.362 -1.630 O01 A1ALD 35 A1ALD O18 O2 O 0 1 N N N N N N -14.833 10.902 -28.331 8.651 0.109 -1.293 O18 A1ALD 36 A1ALD O21 O3 O 0 1 N N N N N N -19.775 13.588 -25.383 2.642 -0.884 1.421 O21 A1ALD 37 A1ALD H131 H1 H 0 0 N N N N N N -16.604 12.698 -27.213 5.822 -0.425 -1.184 H131 A1ALD 38 A1ALD H171 H2 H 0 0 N N N N N N -18.697 11.856 -27.925 6.618 -2.893 0.392 H171 A1ALD 39 A1ALD H172 H3 H 0 0 N N N N N N -18.775 11.360 -26.201 5.216 -2.651 -0.704 H172 A1ALD 40 A1ALD H241 H4 H 0 0 N N N N N N -21.129 14.108 -32.331 -3.426 -1.717 1.705 H241 A1ALD 41 A1ALD H281 H5 H 0 0 N N N N N N -22.972 18.853 -35.542 -7.137 -4.294 0.779 H281 A1ALD 42 A1ALD H041 H6 H 0 0 N N N N N N -17.679 16.028 -25.955 2.285 0.966 -0.992 H041 A1ALD 43 A1ALD H052 H7 H 0 0 N N N N N N -19.023 16.312 -23.869 1.783 2.384 1.663 H052 A1ALD 44 A1ALD H051 H8 H 0 0 N N N N N N -20.526 16.247 -24.850 3.137 2.744 0.566 H051 A1ALD 45 A1ALD H061 H9 H 0 0 N N N N N N -19.673 18.233 -26.171 0.192 2.881 -0.217 H061 A1ALD 46 A1ALD H071 H10 H 0 0 N N N N N N -17.250 17.919 -25.693 2.181 5.100 0.440 H071 A1ALD 47 A1ALD H073 H11 H 0 0 N N N N N N -17.805 19.569 -25.249 0.524 5.337 -0.163 H073 A1ALD 48 A1ALD H072 H12 H 0 0 N N N N N N -17.541 18.335 -23.970 0.792 4.621 1.444 H072 A1ALD 49 A1ALD H081 H13 H 0 0 N N N N N N -21.279 18.510 -24.289 2.744 3.799 -1.617 H081 A1ALD 50 A1ALD H082 H14 H 0 0 N N N N N N -19.904 18.682 -23.146 1.755 2.392 -2.079 H082 A1ALD 51 A1ALD H083 H15 H 0 0 N N N N N N -20.169 19.916 -24.425 1.086 4.036 -2.221 H083 A1ALD 52 A1ALD H111 H16 H 0 0 N N N N N N -18.487 11.842 -24.695 4.962 -1.498 1.464 H111 A1ALD 53 A1ALD H121 H17 H 0 0 N N N N N N -16.728 10.337 -25.275 7.405 -0.927 1.386 H121 A1ALD 54 A1ALD H122 H18 H 0 0 N N N N N N -15.493 11.641 -25.248 6.976 0.680 0.752 H122 A1ALD 55 A1ALD H162 H19 H 0 0 N N N N N N -18.109 9.079 -26.688 7.521 -3.978 -1.497 H162 A1ALD 56 A1ALD H161 H20 H 0 0 N N N N N N -18.897 9.456 -28.258 6.501 -3.047 -2.635 H161 A1ALD 57 A1ALD H191 H21 H 0 0 N N N N N N -16.191 12.888 -22.900 6.084 -0.510 3.596 H191 A1ALD 58 A1ALD H231 H22 H 0 0 N N N N N N -20.152 13.613 -30.151 -1.163 -0.829 1.393 H231 A1ALD 59 A1ALD H271 H23 H 0 0 N N N N N N -22.019 18.370 -33.295 -4.898 -3.381 0.464 H271 A1ALD 60 A1ALD H291 H24 H 0 0 N N N N N N -22.689 17.290 -37.412 -9.119 -2.934 0.598 H291 A1ALD 61 A1ALD H333 H25 H 0 0 N N N N N N -20.229 12.473 -37.932 -9.075 2.479 -1.575 H333 A1ALD 62 A1ALD H332 H26 H 0 0 N N N N N N -18.874 12.581 -36.758 -9.793 2.423 0.053 H332 A1ALD 63 A1ALD H331 H27 H 0 0 N N N N N N -20.399 11.752 -36.295 -8.187 3.151 -0.186 H331 A1ALD 64 A1ALD H341 H28 H 0 0 N N N N N N -19.833 13.789 -34.266 -6.145 1.549 -0.498 H341 A1ALD 65 A1ALD H361 H29 H 0 0 N N N N N N -19.782 18.131 -32.043 -4.659 0.132 -1.964 H361 A1ALD 66 A1ALD H371 H30 H 0 0 N N N N N N -18.808 17.650 -29.873 -2.397 1.022 -2.277 H371 A1ALD 67 A1ALD H031 H31 H 0 0 N N N N N N -20.151 16.410 -27.351 0.484 -0.115 1.037 H031 A1ALD 68 A1ALD H101 H32 H 0 0 N N N N N N -16.665 14.186 -25.168 4.654 1.158 0.279 H101 A1ALD 69 A1ALD H151 H33 H 0 0 N N N N N N -16.534 8.876 -28.851 9.012 -2.200 -2.418 H151 A1ALD 70 A1ALD H201 H34 H 0 0 N N N N N N -17.143 11.781 -21.346 4.799 1.293 4.242 H201 A1ALD 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALD C02 O01 DOUB N N 1 A1ALD C07 C06 SING N N 2 A1ALD C08 C06 SING N N 3 A1ALD C06 C05 SING N N 4 A1ALD C05 C04 SING N N 5 A1ALD C09 C04 SING N N 6 A1ALD C14 C13 SING N N 7 A1ALD C17 C16 SING N N 8 A1ALD C16 N15 SING N N 9 A1ALD N15 C14 SING N N 10 A1ALD O18 C14 DOUB N N 11 A1ALD C13 C12 SING N N 12 A1ALD C12 C11 SING N N 13 A1ALD C19 C11 SING N N 14 A1ALD N20 C19 DOUB N N 15 A1ALD C11 N10 SING N N 16 A1ALD N10 C09 SING N N 17 A1ALD O21 C09 DOUB N N 18 A1ALD C04 N03 SING N N 19 A1ALD N03 C02 SING N N 20 A1ALD C22 C02 SING N N 21 A1ALD C23 C22 DOUB Y N 22 A1ALD C27 C26 DOUB Y N 23 A1ALD N31 C30 DOUB Y N 24 A1ALD N32 N31 SING Y N 25 A1ALD C33 N32 SING N N 26 A1ALD C34 N32 SING Y N 27 A1ALD C35 C34 DOUB Y N 28 A1ALD C30 C29 SING Y N 29 A1ALD C29 C28 DOUB Y N 30 A1ALD C28 C27 SING Y N 31 A1ALD C26 C25 SING N N 32 A1ALD C36 C25 SING Y N 33 A1ALD C37 C36 DOUB Y N 34 A1ALD C25 C24 DOUB Y N 35 A1ALD C24 C23 SING Y N 36 A1ALD C13 C17 SING N N 37 A1ALD C22 C37 SING Y N 38 A1ALD C26 C35 SING Y N 39 A1ALD C30 C35 SING Y N 40 A1ALD C13 H131 SING N N 41 A1ALD C17 H171 SING N N 42 A1ALD C17 H172 SING N N 43 A1ALD C24 H241 SING N N 44 A1ALD C28 H281 SING N N 45 A1ALD C04 H041 SING N N 46 A1ALD C05 H052 SING N N 47 A1ALD C05 H051 SING N N 48 A1ALD C06 H061 SING N N 49 A1ALD C07 H071 SING N N 50 A1ALD C07 H073 SING N N 51 A1ALD C07 H072 SING N N 52 A1ALD C08 H081 SING N N 53 A1ALD C08 H082 SING N N 54 A1ALD C08 H083 SING N N 55 A1ALD C11 H111 SING N N 56 A1ALD C12 H121 SING N N 57 A1ALD C12 H122 SING N N 58 A1ALD C16 H162 SING N N 59 A1ALD C16 H161 SING N N 60 A1ALD C19 H191 SING N N 61 A1ALD C23 H231 SING N N 62 A1ALD C27 H271 SING N N 63 A1ALD C29 H291 SING N N 64 A1ALD C33 H333 SING N N 65 A1ALD C33 H332 SING N N 66 A1ALD C33 H331 SING N N 67 A1ALD C34 H341 SING N N 68 A1ALD C36 H361 SING N N 69 A1ALD C37 H371 SING N N 70 A1ALD N03 H031 SING N N 71 A1ALD N10 H101 SING N N 72 A1ALD N15 H151 SING N N 73 A1ALD N20 H201 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALD SMILES ACDLabs 12.01 "O=C1NCCC1CC(C=N)NC(=O)C(CC(C)C)NC(=O)c1ccc(cc1)c1cccc2nn(C)cc12" A1ALD InChI InChI 1.06 "InChI=1S/C28H34N6O3/c1-17(2)13-25(28(37)31-21(15-29)14-20-11-12-30-26(20)35)32-27(36)19-9-7-18(8-10-19)22-5-4-6-24-23(22)16-34(3)33-24/h4-10,15-17,20-21,25,29H,11-14H2,1-3H3,(H,30,35)(H,31,37)(H,32,36)/b29-15+/t20-,21-,25+/m1/s1" A1ALD InChIKey InChI 1.06 TVVGUBYSXPRERN-KSHAZORZSA-N A1ALD SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)c1ccc(cc1)c2cccc3nn(C)cc23)C(=O)N[C@@H](C[C@@H]4CCNC4=O)C=N" A1ALD SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)c1ccc(cc1)c2cccc3nn(C)cc23)C(=O)N[CH](C[CH]4CCNC4=O)C=N" A1ALD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3cccc4c3cn(n4)C" A1ALD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3cccc4c3cn(n4)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALD "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1E,2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(2-methyl-2H-indazol-4-yl)benzoyl]-L-leucinamide" A1ALD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(2-methylindazol-4-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALD "Create component" 2024-04-08 RCSB A1ALD "Modify PCM" 2024-09-27 PDBE A1ALD "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALD _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #