data_A1ALF # _chem_comp.id A1ALF _chem_comp.name "N-[(2R)-1-({(2S)-1-amino-3-[(2S,3R)-2-hydroxypyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-ethoxy[1,1'-biphenyl]-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H40 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-08 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.642 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALF C13 C1 C 0 1 N N R N N N 125.635 -27.827 21.863 -2.205 -1.211 -0.051 C13 A1ALF 1 A1ALF C15 C2 C 0 1 N N N N N N 127.828 -28.478 22.961 -1.605 -3.595 -0.497 C15 A1ALF 2 A1ALF C17 C3 C 0 1 N N N N N N 128.486 -29.379 23.976 -2.155 -3.534 -1.923 C17 A1ALF 3 A1ALF C20 C4 C 0 1 Y N N N N N 125.305 -23.882 22.450 1.528 -0.741 -0.579 C20 A1ALF 4 A1ALF C21 C5 C 0 1 Y N N N N N 124.278 -22.897 22.499 2.484 -1.043 -1.553 C21 A1ALF 5 A1ALF C22 C6 C 0 1 Y N N N N N 124.541 -21.655 23.040 3.800 -0.692 -1.356 C22 A1ALF 6 A1ALF C24 C7 C 0 1 Y N N N N N 126.188 -19.952 24.170 5.598 0.342 0.025 C24 A1ALF 7 A1ALF C26 C8 C 0 1 Y N N N N N 127.322 -18.529 25.814 7.301 1.343 1.390 C26 A1ALF 8 A1ALF C02 C9 C 0 1 N N S N N N 121.370 -25.738 18.422 -7.529 1.600 -1.436 C02 A1ALF 9 A1ALF C04 C10 C 0 1 N N N N N N 119.482 -25.745 19.996 -6.262 3.632 -1.568 C04 A1ALF 10 A1ALF C05 C11 C 0 1 N N N N N N 120.342 -26.740 20.340 -5.883 2.920 -0.246 C05 A1ALF 11 A1ALF C06 C12 C 0 1 N N R N N N 121.636 -26.649 19.369 -6.267 1.450 -0.559 C06 A1ALF 12 A1ALF C07 C13 C 0 1 N N N N N N 121.988 -28.088 18.731 -6.591 0.689 0.728 C07 A1ALF 13 A1ALF C08 C14 C 0 1 N N S N N N 122.541 -29.122 19.819 -5.298 0.425 1.503 C08 A1ALF 14 A1ALF C09 C15 C 0 1 N N N N N N 122.594 -30.547 19.227 -5.631 -0.238 2.840 C09 A1ALF 15 A1ALF C12 C16 C 0 1 N N N N N N 124.163 -28.231 21.575 -3.095 -0.299 0.754 C12 A1ALF 16 A1ALF C14 C17 C 0 1 N N N N N N 126.265 -28.802 22.816 -2.414 -2.658 0.402 C14 A1ALF 17 A1ALF C16 C18 C 0 1 N N N N N N 128.542 -28.466 21.570 -1.713 -5.027 0.031 C16 A1ALF 18 A1ALF C19 C19 C 0 1 N N N N N N 125.080 -25.299 21.824 0.117 -1.123 -0.785 C19 A1ALF 19 A1ALF C23 C20 C 0 1 Y N N N N N 125.871 -21.346 23.568 4.180 -0.035 -0.185 C23 A1ALF 20 A1ALF C25 C21 C 0 1 Y N N N N N 127.040 -19.824 25.287 5.981 0.998 1.195 C25 A1ALF 21 A1ALF C27 C22 C 0 1 Y N N N N N 126.772 -17.399 25.237 8.250 1.037 0.423 C27 A1ALF 22 A1ALF C29 C23 C 0 1 N N N N N N 127.037 -14.979 24.887 10.474 1.034 -0.416 C29 A1ALF 23 A1ALF C30 C24 C 0 1 N N N N N N 125.856 -14.089 25.279 11.878 1.495 -0.021 C30 A1ALF 24 A1ALF C31 C25 C 0 1 Y N N N N N 125.928 -17.523 24.119 7.873 0.384 -0.743 C31 A1ALF 25 A1ALF C32 C26 C 0 1 Y N N N N N 125.643 -18.808 23.579 6.554 0.037 -0.944 C32 A1ALF 26 A1ALF C33 C27 C 0 1 Y N N N N N 126.898 -22.328 23.504 3.227 0.267 0.788 C33 A1ALF 27 A1ALF C34 C28 C 0 1 Y N N N N N 126.629 -23.571 22.955 1.910 -0.083 0.594 C34 A1ALF 28 A1ALF N03 N1 N 0 1 N N N N N N 119.847 -25.368 18.541 -7.495 2.953 -2.022 N03 A1ALF 29 A1ALF N10 N2 N 0 1 N N N N N N 121.480 -31.350 19.692 -4.386 -0.601 3.531 N10 A1ALF 30 A1ALF N11 N3 N 0 1 N N N N N N 123.845 -28.734 20.199 -4.432 -0.461 0.720 N11 A1ALF 31 A1ALF N18 N4 N 0 1 N N N N N N 125.765 -26.466 22.424 -0.805 -0.832 0.154 N18 A1ALF 32 A1ALF O01 O1 O 0 1 N N N N N N 121.713 -26.237 17.090 -8.700 1.449 -0.631 O01 A1ALF 33 A1ALF O28 O2 O 0 1 N N N N N N 127.079 -16.111 25.804 9.550 1.379 0.618 O28 A1ALF 34 A1ALF O35 O3 O 0 1 N N N N N N 124.413 -25.443 20.860 -0.214 -1.700 -1.803 O35 A1ALF 35 A1ALF O36 O4 O 0 1 N N N N N N 123.313 -28.141 22.432 -2.608 0.580 1.432 O36 A1ALF 36 A1ALF H131 H1 H 0 0 N N N N N N 126.185 -27.869 20.912 -2.454 -1.122 -1.108 H131 A1ALF 37 A1ALF H151 H2 H 0 0 N N N N N N 127.890 -27.452 23.352 -0.559 -3.286 -0.497 H151 A1ALF 38 A1ALF H172 H3 H 0 0 N N N N N N 129.555 -29.130 24.050 -3.200 -3.843 -1.923 H172 A1ALF 39 A1ALF H171 H4 H 0 0 N N N N N N 128.008 -29.237 24.956 -2.078 -2.514 -2.299 H171 A1ALF 40 A1ALF H173 H5 H 0 0 N N N N N N 128.375 -30.427 23.662 -1.579 -4.202 -2.563 H173 A1ALF 41 A1ALF H211 H6 H 0 0 N N N N N N 123.295 -23.122 22.113 2.190 -1.552 -2.459 H211 A1ALF 42 A1ALF H221 H7 H 0 0 N N N N N N 123.762 -20.908 23.074 4.539 -0.924 -2.109 H221 A1ALF 43 A1ALF H261 H8 H 0 0 N N N N N N 127.971 -18.430 26.672 7.598 1.852 2.296 H261 A1ALF 44 A1ALF H021 H9 H 0 0 N N N N N N 121.943 -24.818 18.608 -7.521 0.852 -2.228 H021 A1ALF 45 A1ALF H042 H10 H 0 0 N N N N N N 118.442 -26.099 20.052 -6.456 4.689 -1.388 H042 A1ALF 46 A1ALF H041 H11 H 0 0 N N N N N N 119.611 -24.879 20.661 -5.469 3.511 -2.306 H041 A1ALF 47 A1ALF H051 H12 H 0 0 N N N N N N 120.653 -26.617 21.388 -4.815 3.010 -0.047 H051 A1ALF 48 A1ALF H052 H13 H 0 0 N N N N N N 119.851 -27.716 20.215 -6.468 3.308 0.588 H052 A1ALF 49 A1ALF H061 H14 H 0 0 N N N N N N 122.492 -26.342 19.988 -5.471 0.953 -1.112 H061 A1ALF 50 A1ALF H072 H15 H 0 0 N N N N N N 121.076 -28.506 18.279 -7.266 1.285 1.342 H072 A1ALF 51 A1ALF H071 H16 H 0 0 N N N N N N 122.754 -27.951 17.953 -7.066 -0.260 0.480 H071 A1ALF 52 A1ALF H081 H17 H 0 0 N N N N N N 121.860 -29.115 20.683 -4.783 1.369 1.683 H081 A1ALF 53 A1ALF H092 H18 H 0 0 N N N N N N 122.555 -30.481 18.130 -6.200 0.456 3.458 H092 A1ALF 54 A1ALF H091 H19 H 0 0 N N N N N N 123.535 -31.028 19.533 -6.223 -1.136 2.663 H091 A1ALF 55 A1ALF H142 H20 H 0 0 N N N N N N 125.781 -28.717 23.800 -2.080 -2.767 1.434 H142 A1ALF 56 A1ALF H141 H21 H 0 0 N N N N N N 126.137 -29.825 22.431 -3.471 -2.911 0.333 H141 A1ALF 57 A1ALF H162 H22 H 0 0 N N N N N N 129.610 -28.241 21.707 -1.137 -5.695 -0.609 H162 A1ALF 58 A1ALF H163 H23 H 0 0 N N N N N N 128.433 -29.452 21.094 -1.321 -5.070 1.048 H163 A1ALF 59 A1ALF H161 H24 H 0 0 N N N N N N 128.085 -27.697 20.930 -2.759 -5.336 0.031 H161 A1ALF 60 A1ALF H251 H25 H 0 0 N N N N N N 127.476 -20.702 25.741 5.243 1.237 1.947 H251 A1ALF 61 A1ALF H292 H26 H 0 0 N N N N N N 126.905 -15.340 23.856 10.179 1.524 -1.344 H292 A1ALF 62 A1ALF H291 H27 H 0 0 N N N N N N 127.974 -14.407 24.958 10.473 -0.046 -0.559 H291 A1ALF 63 A1ALF H303 H28 H 0 0 N N N N N N 125.805 -13.226 24.599 11.879 2.576 0.122 H303 A1ALF 64 A1ALF H301 H29 H 0 0 N N N N N N 124.923 -14.667 25.209 12.173 1.006 0.907 H301 A1ALF 65 A1ALF H302 H30 H 0 0 N N N N N N 125.991 -13.734 26.311 12.582 1.232 -0.810 H302 A1ALF 66 A1ALF H311 H31 H 0 0 N N N N N N 125.495 -16.641 23.670 8.613 0.148 -1.492 H311 A1ALF 67 A1ALF H321 H32 H 0 0 N N N N N N 125.005 -18.900 22.712 6.261 -0.472 -1.850 H321 A1ALF 68 A1ALF H331 H33 H 0 0 N N N N N N 127.885 -22.105 23.882 3.522 0.775 1.694 H331 A1ALF 69 A1ALF H341 H34 H 0 0 N N N N N N 127.411 -24.314 22.903 1.172 0.150 1.347 H341 A1ALF 70 A1ALF H031 H35 H 0 0 N N N N N N 119.705 -24.391 18.381 -7.535 2.911 -3.030 H031 A1ALF 71 A1ALF H2 H37 H 0 1 N N N N N N 121.539 -32.265 19.294 -4.580 -1.041 4.418 H2 A1ALF 72 A1ALF H102 H38 H 0 0 N N N N N N 121.511 -31.418 20.689 -3.810 -1.193 2.951 H102 A1ALF 73 A1ALF H111 H40 H 0 0 N N N N N N 124.582 -28.797 19.526 -4.822 -1.165 0.178 H111 A1ALF 74 A1ALF H181 H41 H 0 0 N N N N N N 126.334 -26.329 23.235 -0.541 -0.372 0.966 H181 A1ALF 75 A1ALF H011 H42 H 0 0 N N N N N N 121.514 -25.572 16.441 -9.529 1.532 -1.123 H011 A1ALF 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALF C02 C06 SING N N 1 A1ALF C02 N03 SING N N 2 A1ALF C02 O01 SING N N 3 A1ALF C04 C05 SING N N 4 A1ALF C04 N03 SING N N 5 A1ALF C05 C06 SING N N 6 A1ALF C06 C07 SING N N 7 A1ALF C07 C08 SING N N 8 A1ALF C08 C09 SING N N 9 A1ALF C08 N11 SING N N 10 A1ALF C09 N10 SING N N 11 A1ALF C12 C13 SING N N 12 A1ALF C12 N11 SING N N 13 A1ALF C12 O36 DOUB N N 14 A1ALF C13 C14 SING N N 15 A1ALF C13 N18 SING N N 16 A1ALF C14 C15 SING N N 17 A1ALF C15 C16 SING N N 18 A1ALF C15 C17 SING N N 19 A1ALF C19 C20 SING N N 20 A1ALF C19 N18 SING N N 21 A1ALF C19 O35 DOUB N N 22 A1ALF C20 C21 DOUB Y N 23 A1ALF C20 C34 SING Y N 24 A1ALF C21 C22 SING Y N 25 A1ALF C22 C23 DOUB Y N 26 A1ALF C23 C24 SING N N 27 A1ALF C23 C33 SING Y N 28 A1ALF C24 C25 DOUB Y N 29 A1ALF C24 C32 SING Y N 30 A1ALF C25 C26 SING Y N 31 A1ALF C26 C27 DOUB Y N 32 A1ALF C27 C31 SING Y N 33 A1ALF C27 O28 SING N N 34 A1ALF C29 C30 SING N N 35 A1ALF C29 O28 SING N N 36 A1ALF C31 C32 DOUB Y N 37 A1ALF C33 C34 DOUB Y N 38 A1ALF C13 H131 SING N N 39 A1ALF C15 H151 SING N N 40 A1ALF C17 H172 SING N N 41 A1ALF C17 H171 SING N N 42 A1ALF C17 H173 SING N N 43 A1ALF C21 H211 SING N N 44 A1ALF C22 H221 SING N N 45 A1ALF C26 H261 SING N N 46 A1ALF C02 H021 SING N N 47 A1ALF C04 H042 SING N N 48 A1ALF C04 H041 SING N N 49 A1ALF C05 H051 SING N N 50 A1ALF C05 H052 SING N N 51 A1ALF C06 H061 SING N N 52 A1ALF C07 H072 SING N N 53 A1ALF C07 H071 SING N N 54 A1ALF C08 H081 SING N N 55 A1ALF C09 H092 SING N N 56 A1ALF C09 H091 SING N N 57 A1ALF C14 H142 SING N N 58 A1ALF C14 H141 SING N N 59 A1ALF C16 H162 SING N N 60 A1ALF C16 H163 SING N N 61 A1ALF C16 H161 SING N N 62 A1ALF C25 H251 SING N N 63 A1ALF C29 H292 SING N N 64 A1ALF C29 H291 SING N N 65 A1ALF C30 H303 SING N N 66 A1ALF C30 H301 SING N N 67 A1ALF C30 H302 SING N N 68 A1ALF C31 H311 SING N N 69 A1ALF C32 H321 SING N N 70 A1ALF C33 H331 SING N N 71 A1ALF C34 H341 SING N N 72 A1ALF N03 H031 SING N N 73 A1ALF N10 H2 SING N N 74 A1ALF N10 H102 SING N N 75 A1ALF N11 H111 SING N N 76 A1ALF N18 H181 SING N N 77 A1ALF O01 H011 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALF SMILES ACDLabs 12.01 "OC1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)c1ccc(cc1)c1ccc(OCC)cc1)CN" A1ALF InChI InChI 1.06 "InChI=1S/C28H40N4O4/c1-4-36-24-11-9-20(10-12-24)19-5-7-21(8-6-19)27(34)32-25(15-18(2)3)28(35)31-23(17-29)16-22-13-14-30-26(22)33/h5-12,18,22-23,25-26,30,33H,4,13-17,29H2,1-3H3,(H,31,35)(H,32,34)" A1ALF InChIKey InChI 1.06 SVNBWMXUUSATBM-UHFFFAOYSA-N A1ALF SMILES_CANONICAL CACTVS 3.385 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CN)C[C@H]3CCN[C@H]3O" A1ALF SMILES CACTVS 3.385 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)N[CH](CC(C)C)C(=O)N[CH](CN)C[CH]3CCN[CH]3O" A1ALF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCN[C@@H]3O)CN" A1ALF SMILES "OpenEye OEToolkits" 2.0.7 "CCOc1ccc(cc1)c2ccc(cc2)C(=O)NC(CC(C)C)C(=O)NC(CC3CCNC3O)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALF "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2R)-1-({(2S)-1-amino-3-[(2S,3R)-2-hydroxypyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-ethoxy[1,1'-biphenyl]-4-carboxamide" A1ALF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanyl-3-[(2~{R},3~{S})-2-oxidanylpyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(4-ethoxyphenyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALF "Create component" 2024-04-08 RCSB A1ALF "Modify PCM" 2024-09-27 PDBE A1ALF "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C09 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #