data_A1ALH # _chem_comp.id A1ALH _chem_comp.name "N-[(2S)-1-({(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-3',4'-dimethoxy[1,1'-biphenyl]-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H36 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-08 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALH C13 C1 C 0 1 N N S N N N 8.228 -20.160 18.859 -6.294 -1.663 0.326 C13 A1ALH 1 A1ALH C17 C2 C 0 1 N N N N N N 7.392 -19.887 20.135 -5.760 -3.004 -0.228 C17 A1ALH 2 A1ALH C22 C3 C 0 1 Y N N N N N 11.649 -17.164 21.927 1.489 0.546 0.627 C22 A1ALH 3 A1ALH C24 C4 C 0 1 Y N N N N N 10.797 -14.902 22.456 3.236 0.048 -0.945 C24 A1ALH 4 A1ALH C26 C5 C 0 1 Y N N N N N 12.077 -12.948 23.636 5.595 -0.215 -0.188 C26 A1ALH 5 A1ALH C28 C6 C 0 1 Y N N N N N 11.470 -10.494 23.525 7.858 -0.466 0.583 C28 A1ALH 6 A1ALH C02 C7 C 0 1 N N N N N N 11.515 -18.572 21.332 0.064 0.810 0.910 C02 A1ALH 7 A1ALH C04 C8 C 0 1 N N S N N N 12.125 -21.105 21.397 -2.229 1.166 0.168 C04 A1ALH 8 A1ALH C05 C9 C 0 1 N N N N N N 12.699 -22.079 22.494 -2.394 2.682 0.037 C05 A1ALH 9 A1ALH C06 C10 C 0 1 N N N N N N 14.242 -22.258 22.439 -3.808 3.080 0.465 C06 A1ALH 10 A1ALH C07 C11 C 0 1 N N N N N N 14.805 -23.096 23.601 -3.985 2.805 1.959 C07 A1ALH 11 A1ALH C08 C12 C 0 1 N N N N N N 14.719 -22.844 21.103 -4.022 4.571 0.192 C08 A1ALH 12 A1ALH C09 C13 C 0 1 N N N N N N 10.643 -21.493 21.070 -3.125 0.476 -0.828 C09 A1ALH 13 A1ALH C11 C14 C 0 1 N N S N N N 8.903 -22.600 19.539 -5.317 -0.317 -1.538 C11 A1ALH 14 A1ALH C12 C15 C 0 1 N N N N N N 8.245 -21.653 18.486 -6.612 -0.699 -0.819 C12 A1ALH 15 A1ALH C14 C16 C 0 1 N N N N N N 7.502 -19.340 17.780 -7.559 -2.045 1.064 C14 A1ALH 16 A1ALH C16 C17 C 0 1 N N N N N N 6.047 -19.290 19.683 -6.379 -4.021 0.756 C16 A1ALH 17 A1ALH C19 C18 C 0 1 N N N N N N 8.819 -24.064 19.052 -5.641 0.528 -2.742 C19 A1ALH 18 A1ALH C23 C19 C 0 1 Y N N N N N 10.639 -16.198 21.920 1.907 0.294 -0.683 C23 A1ALH 19 A1ALH C25 C20 C 0 1 Y N N N N N 11.965 -14.398 23.071 4.165 0.050 0.096 C25 A1ALH 20 A1ALH C27 C21 C 0 1 Y N N N N N 11.403 -11.832 23.067 6.525 -0.219 0.852 C27 A1ALH 21 A1ALH C29 C22 C 0 1 Y N N N N N 12.272 -10.168 24.645 8.271 -0.711 -0.725 C29 A1ALH 22 A1ALH C31 C23 C 0 1 N N N N N N 13.270 -7.996 24.500 9.935 -1.197 -2.352 C31 A1ALH 23 A1ALH C32 C24 C 0 1 Y N N N N N 12.961 -11.244 25.227 7.345 -0.713 -1.758 C32 A1ALH 24 A1ALH C33 C25 C 0 1 Y N N N N N 12.870 -12.570 24.743 6.013 -0.466 -1.494 C33 A1ALH 25 A1ALH C35 C26 C 0 1 N N N N N N 9.560 -9.839 22.210 8.274 -0.212 2.911 C35 A1ALH 26 A1ALH C36 C27 C 0 1 Y N N N N N 12.976 -15.390 23.061 3.750 0.308 1.403 C36 A1ALH 27 A1ALH C37 C28 C 0 1 Y N N N N N 12.830 -16.694 22.525 2.422 0.554 1.668 C37 A1ALH 28 A1ALH N03 N1 N 0 1 N N N N N N 12.170 -19.701 21.907 -0.835 0.802 -0.094 N03 A1ALH 29 A1ALH N10 N2 N 0 1 N N N N N N 10.314 -22.212 19.888 -4.457 0.441 -0.626 N10 A1ALH 30 A1ALH N15 N3 N 0 1 N N N N N N 6.290 -18.881 18.300 -7.582 -3.370 1.286 N15 A1ALH 31 A1ALH N20 N4 N 0 1 N N N N N N 7.951 -24.923 19.322 -5.174 1.716 -2.835 N20 A1ALH 32 A1ALH O01 O1 O 0 1 N N N N N N 10.867 -18.730 20.318 -0.298 1.034 2.048 O01 A1ALH 33 A1ALH O18 O2 O 0 1 N N N N N N 7.876 -19.107 16.646 -8.425 -1.267 1.405 O18 A1ALH 34 A1ALH O21 O3 O 0 1 N N N N N N 9.761 -21.161 21.826 -2.647 -0.047 -1.812 O21 A1ALH 35 A1ALH O30 O4 O 0 1 N N N N N N 12.385 -8.897 25.146 9.582 -0.954 -0.989 O30 A1ALH 36 A1ALH O34 O5 O 0 1 N N N N N N 10.760 -9.483 22.897 8.767 -0.470 1.595 O34 A1ALH 37 A1ALH H131 H1 H 0 0 N N N N N N 9.255 -19.789 18.993 -5.571 -1.218 1.010 H131 A1ALH 38 A1ALH H172 H2 H 0 0 N N N N N N 7.920 -19.175 20.786 -6.117 -3.177 -1.243 H172 A1ALH 39 A1ALH H171 H3 H 0 0 N N N N N N 7.222 -20.826 20.682 -4.671 -3.036 -0.189 H171 A1ALH 40 A1ALH H241 H4 H 0 0 N N N N N N 9.949 -14.236 22.390 3.559 -0.147 -1.957 H241 A1ALH 41 A1ALH H041 H5 H 0 0 N N N N N N 12.732 -21.195 20.484 -2.502 0.857 1.177 H041 A1ALH 42 A1ALH H051 H6 H 0 0 N N N N N N 12.232 -23.066 22.359 -1.666 3.183 0.676 H051 A1ALH 43 A1ALH H052 H7 H 0 0 N N N N N N 12.433 -21.680 23.484 -2.231 2.977 -0.999 H052 A1ALH 44 A1ALH H061 H8 H 0 0 N N N N N N 14.682 -21.253 22.525 -4.536 2.499 -0.101 H061 A1ALH 45 A1ALH H073 H9 H 0 0 N N N N N N 15.897 -23.180 23.497 -5.011 3.030 2.251 H073 A1ALH 46 A1ALH H071 H10 H 0 0 N N N N N N 14.564 -22.607 24.556 -3.772 1.755 2.163 H071 A1ALH 47 A1ALH H072 H11 H 0 0 N N N N N N 14.356 -24.100 23.580 -3.300 3.432 2.528 H072 A1ALH 48 A1ALH H082 H12 H 0 0 N N N N N N 15.814 -22.949 21.118 -3.895 4.767 -0.873 H082 A1ALH 49 A1ALH H083 H13 H 0 0 N N N N N N 14.258 -23.831 20.950 -5.029 4.854 0.496 H083 A1ALH 50 A1ALH H081 H14 H 0 0 N N N N N N 14.427 -22.172 20.283 -3.294 5.152 0.758 H081 A1ALH 51 A1ALH H111 H15 H 0 0 N N N N N N 8.301 -22.528 20.457 -4.799 -1.222 -1.858 H111 A1ALH 52 A1ALH H121 H16 H 0 0 N N N N N N 7.204 -21.978 18.341 -7.290 -1.182 -1.523 H121 A1ALH 53 A1ALH H122 H17 H 0 0 N N N N N N 8.798 -21.760 17.541 -7.083 0.198 -0.418 H122 A1ALH 54 A1ALH H162 H18 H 0 0 N N N N N N 5.774 -18.425 20.305 -6.646 -4.939 0.232 H162 A1ALH 55 A1ALH H161 H19 H 0 0 N N N N N N 5.248 -20.044 19.733 -5.680 -4.238 1.564 H161 A1ALH 56 A1ALH H191 H20 H 0 0 N N N N N N 9.612 -24.387 18.394 -6.269 0.132 -3.527 H191 A1ALH 57 A1ALH H231 H21 H 0 0 N N N N N N 9.687 -16.457 21.481 1.188 0.291 -1.488 H231 A1ALH 58 A1ALH H271 H22 H 0 0 N N N N N N 10.782 -12.023 22.205 6.203 -0.029 1.865 H271 A1ALH 59 A1ALH H312 H23 H 0 0 N N N N N N 13.248 -7.025 25.017 9.671 -0.329 -2.956 H312 A1ALH 60 A1ALH H311 H24 H 0 0 N N N N N N 14.292 -8.403 24.527 11.008 -1.375 -2.423 H311 A1ALH 61 A1ALH H313 H25 H 0 0 N N N N N N 12.957 -7.861 23.454 9.396 -2.071 -2.717 H313 A1ALH 62 A1ALH H321 H26 H 0 0 N N N N N N 13.589 -11.050 26.084 7.668 -0.903 -2.770 H321 A1ALH 63 A1ALH H331 H27 H 0 0 N N N N N N 13.439 -13.337 25.248 5.294 -0.468 -2.300 H331 A1ALH 64 A1ALH H351 H28 H 0 0 N N N N N N 9.111 -8.939 21.765 7.810 0.775 2.938 H351 A1ALH 65 A1ALH H353 H29 H 0 0 N N N N N N 9.794 -10.563 21.415 7.535 -0.968 3.177 H353 A1ALH 66 A1ALH H352 H30 H 0 0 N N N N N N 8.851 -10.290 22.920 9.100 -0.244 3.621 H352 A1ALH 67 A1ALH H361 H31 H 0 0 N N N N N N 13.931 -15.133 23.495 4.470 0.313 2.207 H361 A1ALH 68 A1ALH H371 H32 H 0 0 N N N N N N 13.675 -17.364 22.579 2.100 0.753 2.679 H371 A1ALH 69 A1ALH H031 H33 H 0 0 N N N N N N 12.712 -19.537 22.731 -0.558 0.555 -0.991 H031 A1ALH 70 A1ALH H101 H34 H 0 0 N N N N N N 11.051 -22.470 19.263 -4.846 0.918 0.123 H101 A1ALH 71 A1ALH H151 H35 H 0 0 N N N N N N 5.647 -18.324 17.775 -8.302 -3.836 1.739 H151 A1ALH 72 A1ALH H201 H36 H 0 0 N N N N N N 8.136 -25.797 18.872 -5.383 2.260 -3.610 H201 A1ALH 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALH C02 O01 DOUB N N 1 A1ALH C04 N03 SING N N 2 A1ALH C06 C05 SING N N 3 A1ALH C07 C06 SING N N 4 A1ALH C08 C06 SING N N 5 A1ALH C05 C04 SING N N 6 A1ALH C09 C04 SING N N 7 A1ALH C11 N10 SING N N 8 A1ALH C13 C12 SING N N 9 A1ALH C14 C13 SING N N 10 A1ALH C16 N15 SING N N 11 A1ALH C17 C16 SING N N 12 A1ALH N15 C14 SING N N 13 A1ALH O18 C14 DOUB N N 14 A1ALH C12 C11 SING N N 15 A1ALH C19 C11 SING N N 16 A1ALH N20 C19 DOUB N N 17 A1ALH N10 C09 SING N N 18 A1ALH O21 C09 DOUB N N 19 A1ALH N03 C02 SING N N 20 A1ALH C22 C02 SING N N 21 A1ALH C23 C22 DOUB Y N 22 A1ALH C24 C23 SING Y N 23 A1ALH C25 C24 DOUB Y N 24 A1ALH C27 C26 DOUB Y N 25 A1ALH C28 C27 SING Y N 26 A1ALH C31 O30 SING N N 27 A1ALH O30 C29 SING N N 28 A1ALH C32 C29 SING Y N 29 A1ALH C33 C32 DOUB Y N 30 A1ALH C29 C28 DOUB Y N 31 A1ALH O34 C28 SING N N 32 A1ALH C35 O34 SING N N 33 A1ALH C26 C25 SING N N 34 A1ALH C36 C25 SING Y N 35 A1ALH C37 C36 DOUB Y N 36 A1ALH C13 C17 SING N N 37 A1ALH C22 C37 SING Y N 38 A1ALH C26 C33 SING Y N 39 A1ALH C13 H131 SING N N 40 A1ALH C17 H172 SING N N 41 A1ALH C17 H171 SING N N 42 A1ALH C24 H241 SING N N 43 A1ALH C04 H041 SING N N 44 A1ALH C05 H051 SING N N 45 A1ALH C05 H052 SING N N 46 A1ALH C06 H061 SING N N 47 A1ALH C07 H073 SING N N 48 A1ALH C07 H071 SING N N 49 A1ALH C07 H072 SING N N 50 A1ALH C08 H082 SING N N 51 A1ALH C08 H083 SING N N 52 A1ALH C08 H081 SING N N 53 A1ALH C11 H111 SING N N 54 A1ALH C12 H121 SING N N 55 A1ALH C12 H122 SING N N 56 A1ALH C16 H162 SING N N 57 A1ALH C16 H161 SING N N 58 A1ALH C19 H191 SING N N 59 A1ALH C23 H231 SING N N 60 A1ALH C27 H271 SING N N 61 A1ALH C31 H312 SING N N 62 A1ALH C31 H311 SING N N 63 A1ALH C31 H313 SING N N 64 A1ALH C32 H321 SING N N 65 A1ALH C33 H331 SING N N 66 A1ALH C35 H351 SING N N 67 A1ALH C35 H353 SING N N 68 A1ALH C35 H352 SING N N 69 A1ALH C36 H361 SING N N 70 A1ALH C37 H371 SING N N 71 A1ALH N03 H031 SING N N 72 A1ALH N10 H101 SING N N 73 A1ALH N15 H151 SING N N 74 A1ALH N20 H201 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALH SMILES ACDLabs 12.01 "COc1ccc(cc1OC)c1ccc(cc1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=N" A1ALH InChI InChI 1.06 "InChI=1S/C28H36N4O5/c1-17(2)13-23(28(35)31-22(16-29)14-21-11-12-30-26(21)33)32-27(34)19-7-5-18(6-8-19)20-9-10-24(36-3)25(15-20)37-4/h5-10,15-17,21-23,29H,11-14H2,1-4H3,(H,30,33)(H,31,35)(H,32,34)/b29-16+/t21-,22?,23-/m0/s1" A1ALH InChIKey InChI 1.06 LVCBFULPYAXRCI-TXGORWANSA-N A1ALH SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1OC)c2ccc(cc2)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N" A1ALH SMILES CACTVS 3.385 "COc1ccc(cc1OC)c2ccc(cc2)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=N" A1ALH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3ccc(c(c3)OC)OC" A1ALH SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3ccc(c(c3)OC)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALH "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-1-({(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-3',4'-dimethoxy[1,1'-biphenyl]-4-carboxamide" A1ALH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(3,4-dimethoxyphenyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALH "Create component" 2024-04-08 RCSB A1ALH "Modify PCM" 2024-09-27 PDBE A1ALH "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALH _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #