data_A1ALK # _chem_comp.id A1ALK _chem_comp.name "N~2~-[4-(5-chloropyridin-3-yl)benzoyl]-N-{(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 Cl N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.990 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALK C13 C1 C 0 1 N N S N N N -16.318 1.889 1.851 -5.839 1.645 -0.241 C13 A1ALK 1 A1ALK C17 C2 C 0 1 N N N N N N -15.664 2.866 0.866 -5.350 2.914 0.495 C17 A1ALK 2 A1ALK C22 C3 C 0 1 Y N N N N N -20.003 6.415 2.129 1.993 -0.393 -0.524 C22 A1ALK 3 A1ALK C24 C4 C 0 1 Y N N N N N -18.786 8.479 2.727 3.673 -0.070 1.161 C24 A1ALK 4 A1ALK C26 C5 C 0 1 Y N N N N N -19.825 10.821 2.952 6.053 0.320 0.531 C26 A1ALK 5 A1ALK C28 C6 C 0 1 Y N N N N N -18.799 12.798 4.008 8.336 0.701 -0.063 C28 A1ALK 6 A1ALK C02 C7 C 0 1 N N N N N N -20.025 4.910 1.839 0.583 -0.641 -0.891 C02 A1ALK 7 A1ALK C04 C8 C 0 1 N N S N N N -20.883 2.877 0.419 -1.727 -1.122 -0.285 C04 A1ALK 8 A1ALK C05 C9 C 0 1 N N N N N N -22.013 2.700 -0.659 -1.867 -2.644 -0.351 C05 A1ALK 9 A1ALK C06 C10 C 0 1 N N N N N N -23.478 3.032 -0.217 -3.257 -3.007 -0.877 C06 A1ALK 10 A1ALK C07 C11 C 0 1 N N N N N N -24.497 2.795 -1.342 -3.387 -2.549 -2.331 C07 A1ALK 11 A1ALK C08 C12 C 0 1 N N N N N N -23.892 2.222 1.030 -3.452 -4.522 -0.800 C08 A1ALK 12 A1ALK C09 C13 C 0 1 N N N N N N -19.471 2.320 -0.027 -2.671 -0.575 0.755 C09 A1ALK 13 A1ALK C11 C14 C 0 1 N N S N N N -17.567 0.566 -0.014 -4.901 0.091 1.476 C11 A1ALK 14 A1ALK C12 C15 C 0 1 N N N N N N -16.502 0.554 1.098 -6.177 0.540 0.762 C12 A1ALK 15 A1ALK C14 C16 C 0 1 N N N N N N -15.375 1.943 3.050 -7.084 2.097 -0.972 C14 A1ALK 16 A1ALK C16 C17 C 0 1 N N N N N N -14.335 3.358 1.502 -5.954 4.036 -0.377 C16 A1ALK 17 A1ALK C19 C18 C 0 1 N N N N N N -17.685 -0.852 -0.617 -5.251 -0.904 2.553 C19 A1ALK 18 A1ALK C23 C19 C 0 1 Y N N N N N -18.820 7.092 2.470 2.359 -0.301 0.821 C23 A1ALK 19 A1ALK C25 C20 C 0 1 Y N N N N N -19.916 9.323 2.666 4.638 0.072 0.163 C25 A1ALK 20 A1ALK C27 C21 C 0 1 Y N N N N N -18.846 11.419 3.778 7.028 0.470 -0.459 C27 A1ALK 21 A1ALK C29 C22 C 0 1 Y N N N N N -19.734 13.655 3.420 8.631 0.776 1.288 C29 A1ALK 22 A1ALK C31 C23 C 0 1 Y N N N N N -20.720 11.783 2.405 6.431 0.414 1.870 C31 A1ALK 23 A1ALK C33 C24 C 0 1 Y N N N N N -21.092 8.622 2.314 4.274 -0.026 -1.180 C33 A1ALK 24 A1ALK C34 C25 C 0 1 Y N N N N N -21.133 7.234 2.056 2.961 -0.257 -1.522 C34 A1ALK 25 A1ALK N03 N1 N 0 1 N N N N N N -20.777 4.303 0.805 -0.350 -0.772 0.072 N03 A1ALK 26 A1ALK N10 N2 N 0 1 N N N N N N -18.900 1.095 0.386 -3.995 -0.535 0.509 N10 A1ALK 27 A1ALK N15 N3 N 0 1 N N N N N N -14.291 2.766 2.835 -7.125 3.439 -1.028 N15 A1ALK 28 A1ALK N20 N4 N 0 1 N N N N N N -17.059 -1.291 -1.637 -4.765 -2.086 2.514 N20 A1ALK 29 A1ALK N30 N5 N 0 1 Y N N N N N -20.689 13.124 2.619 7.687 0.635 2.198 N30 A1ALK 30 A1ALK O01 O1 O 0 1 N N N N N N -19.337 4.190 2.546 0.265 -0.726 -2.061 O01 A1ALK 31 A1ALK O18 O2 O 0 1 N N N N N N -15.537 1.333 4.122 -7.922 1.355 -1.439 O18 A1ALK 32 A1ALK O21 O3 O 0 1 N N N N N N -18.811 3.033 -0.792 -2.238 -0.172 1.814 O21 A1ALK 33 A1ALK CL32 CL1 CL 0 0 N N N N N N -17.581 13.528 5.036 9.590 0.894 -1.247 CL32 A1ALK 34 A1ALK H131 H1 H 0 0 N N N N N N -17.305 2.276 2.145 -5.084 1.299 -0.947 H131 A1ALK 35 A1ALK H171 H2 H 0 0 N N N N N N -16.333 3.721 0.686 -5.746 2.952 1.510 H171 A1ALK 36 A1ALK H172 H3 H 0 0 N N N N N N -15.457 2.356 -0.086 -4.261 2.967 0.501 H172 A1ALK 37 A1ALK H241 H4 H 0 0 N N N N N N -17.836 8.923 2.987 3.957 0.001 2.201 H241 A1ALK 38 A1ALK H041 H5 H 0 0 N N N N N N -21.189 2.303 1.306 -1.971 -0.693 -1.257 H041 A1ALK 39 A1ALK H051 H6 H 0 0 N N N N N N -21.996 1.650 -0.988 -1.108 -3.050 -1.019 H051 A1ALK 40 A1ALK H052 H7 H 0 0 N N N N N N -21.767 3.354 -1.508 -1.735 -3.064 0.646 H052 A1ALK 41 A1ALK H061 H8 H 0 0 N N N N N N -23.510 4.099 0.049 -4.016 -2.512 -0.271 H061 A1ALK 42 A1ALK H072 H9 H 0 0 N N N N N N -25.506 3.042 -0.981 -2.670 -3.090 -2.948 H072 A1ALK 43 A1ALK H071 H10 H 0 0 N N N N N N -24.249 3.434 -2.202 -4.398 -2.751 -2.686 H071 A1ALK 44 A1ALK H073 H11 H 0 0 N N N N N N -24.466 1.739 -1.649 -3.187 -1.479 -2.394 H073 A1ALK 45 A1ALK H082 H12 H 0 0 N N N N N N -24.924 2.481 1.310 -3.359 -4.849 0.236 H082 A1ALK 46 A1ALK H083 H13 H 0 0 N N N N N N -23.832 1.147 0.805 -4.442 -4.781 -1.175 H083 A1ALK 47 A1ALK H081 H14 H 0 0 N N N N N N -23.215 2.461 1.863 -2.693 -5.017 -1.406 H081 A1ALK 48 A1ALK H111 H15 H 0 0 N N N N N N -17.183 1.217 -0.813 -4.412 0.955 1.925 H111 A1ALK 49 A1ALK H122 H16 H 0 0 N N N N N N -15.538 0.286 0.642 -6.889 0.921 1.495 H122 A1ALK 50 A1ALK H121 H17 H 0 0 N N N N N N -16.787 -0.214 1.833 -6.617 -0.307 0.235 H121 A1ALK 51 A1ALK H161 H18 H 0 0 N N N N N N -14.326 4.456 1.570 -6.257 4.877 0.247 H161 A1ALK 52 A1ALK H162 H19 H 0 0 N N N N N N -13.476 3.020 0.904 -5.231 4.363 -1.125 H162 A1ALK 53 A1ALK H191 H20 H 0 0 N N N N N N -18.362 -1.536 -0.128 -5.913 -0.618 3.357 H191 A1ALK 54 A1ALK H231 H21 H 0 0 N N N N N N -17.901 6.529 2.538 1.612 -0.410 1.593 H231 A1ALK 55 A1ALK H271 H22 H 0 0 N N N N N N -18.107 10.788 4.249 6.769 0.408 -1.505 H271 A1ALK 56 A1ALK H291 H23 H 0 0 N N N N N N -19.696 14.719 3.601 9.649 0.955 1.600 H291 A1ALK 57 A1ALK H311 H24 H 0 0 N N N N N N -21.499 11.411 1.757 5.686 0.305 2.645 H311 A1ALK 58 A1ALK H331 H25 H 0 0 N N N N N N -22.013 9.181 2.238 5.023 0.079 -1.951 H331 A1ALK 59 A1ALK H341 H26 H 0 0 N N N N N N -22.079 6.786 1.791 2.679 -0.333 -2.562 H341 A1ALK 60 A1ALK H031 H27 H 0 0 N N N N N N -21.320 4.933 0.250 -0.111 -0.636 1.002 H031 A1ALK 61 A1ALK H101 H28 H 0 0 N N N N N N -19.443 0.529 1.006 -4.349 -0.920 -0.308 H101 A1ALK 62 A1ALK H151 H29 H 0 0 N N N N N N -13.568 2.935 3.505 -7.838 3.947 -1.446 H151 A1ALK 63 A1ALK H201 H30 H 0 0 N N N N N N -17.296 -2.241 -1.842 -4.990 -2.727 3.207 H201 A1ALK 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALK C02 O01 DOUB N N 1 A1ALK C04 N03 SING N N 2 A1ALK C06 C05 SING N N 3 A1ALK C07 C06 SING N N 4 A1ALK C08 C06 SING N N 5 A1ALK C05 C04 SING N N 6 A1ALK C09 C04 SING N N 7 A1ALK C11 N10 SING N N 8 A1ALK C13 C12 SING N N 9 A1ALK C14 C13 SING N N 10 A1ALK C16 N15 SING N N 11 A1ALK C17 C16 SING N N 12 A1ALK N15 C14 SING N N 13 A1ALK O18 C14 DOUB N N 14 A1ALK C12 C11 SING N N 15 A1ALK C19 C11 SING N N 16 A1ALK N20 C19 DOUB N N 17 A1ALK N10 C09 SING N N 18 A1ALK O21 C09 DOUB N N 19 A1ALK N03 C02 SING N N 20 A1ALK C22 C02 SING N N 21 A1ALK C23 C22 DOUB Y N 22 A1ALK C24 C23 SING Y N 23 A1ALK C25 C24 DOUB Y N 24 A1ALK C27 C26 DOUB Y N 25 A1ALK C28 C27 SING Y N 26 A1ALK N30 C29 SING Y N 27 A1ALK C31 N30 DOUB Y N 28 A1ALK C29 C28 DOUB Y N 29 A1ALK CL32 C28 SING N N 30 A1ALK C26 C25 SING N N 31 A1ALK C33 C25 SING Y N 32 A1ALK C34 C33 DOUB Y N 33 A1ALK C13 C17 SING N N 34 A1ALK C22 C34 SING Y N 35 A1ALK C26 C31 SING Y N 36 A1ALK C13 H131 SING N N 37 A1ALK C17 H171 SING N N 38 A1ALK C17 H172 SING N N 39 A1ALK C24 H241 SING N N 40 A1ALK C04 H041 SING N N 41 A1ALK C05 H051 SING N N 42 A1ALK C05 H052 SING N N 43 A1ALK C06 H061 SING N N 44 A1ALK C07 H072 SING N N 45 A1ALK C07 H071 SING N N 46 A1ALK C07 H073 SING N N 47 A1ALK C08 H082 SING N N 48 A1ALK C08 H083 SING N N 49 A1ALK C08 H081 SING N N 50 A1ALK C11 H111 SING N N 51 A1ALK C12 H122 SING N N 52 A1ALK C12 H121 SING N N 53 A1ALK C16 H161 SING N N 54 A1ALK C16 H162 SING N N 55 A1ALK C19 H191 SING N N 56 A1ALK C23 H231 SING N N 57 A1ALK C27 H271 SING N N 58 A1ALK C29 H291 SING N N 59 A1ALK C31 H311 SING N N 60 A1ALK C33 H331 SING N N 61 A1ALK C34 H341 SING N N 62 A1ALK N03 H031 SING N N 63 A1ALK N10 H101 SING N N 64 A1ALK N15 H151 SING N N 65 A1ALK N20 H201 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALK SMILES ACDLabs 12.01 "Clc1cc(cnc1)c1ccc(cc1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=N" A1ALK InChI InChI 1.06 "InChI=1S/C25H30ClN5O3/c1-15(2)9-22(25(34)30-21(12-27)11-18-7-8-29-23(18)32)31-24(33)17-5-3-16(4-6-17)19-10-20(26)14-28-13-19/h3-6,10,12-15,18,21-22,27H,7-9,11H2,1-2H3,(H,29,32)(H,30,34)(H,31,33)/b27-12+/t18-,21+,22+/m1/s1" A1ALK InChIKey InChI 1.06 UXWHDTJOXYLLFG-CUEBCNBESA-N A1ALK SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)c1ccc(cc1)c2cncc(Cl)c2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N" A1ALK SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)c1ccc(cc1)c2cncc(Cl)c2)C(=O)N[CH](C[CH]3CCNC3=O)C=N" A1ALK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3cc(cnc3)Cl" A1ALK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3cc(cnc3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALK "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[4-(5-chloropyridin-3-yl)benzoyl]-N-{(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" A1ALK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(5-chloranylpyridin-3-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALK "Create component" 2024-04-09 RCSB A1ALK "Modify PCM" 2024-09-27 PDBE A1ALK "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #