data_A1ALM # _chem_comp.id A1ALM _chem_comp.name "N-{(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(6-methoxypyridin-3-yl)benzoyl]-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H33 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.571 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALM C13 C1 C 0 1 N N S N N N 7.496 -19.507 19.210 -5.795 -1.631 0.280 C13 A1ALM 1 A1ALM C17 C2 C 0 1 N N N N N N 6.555 -19.379 20.392 -5.244 -2.999 -0.185 C17 A1ALM 2 A1ALM C22 C3 C 0 1 Y N N N N N 10.965 -16.762 22.309 1.981 0.551 0.854 C22 A1ALM 3 A1ALM C24 C4 C 0 1 Y N N N N N 12.284 -15.027 23.480 3.797 -0.028 -0.606 C24 A1ALM 4 A1ALM C26 C5 C 0 1 Y N N N N N 11.513 -12.604 23.932 6.116 -0.267 0.275 C26 A1ALM 5 A1ALM C02 C6 C 0 1 N N N N N N 10.787 -18.163 21.753 0.545 0.835 1.055 C02 A1ALM 6 A1ALM C04 C7 C 0 1 N N S N N N 11.179 -20.702 21.783 -1.707 1.168 0.187 C04 A1ALM 7 A1ALM C05 C8 C 0 1 N N N N N N 11.844 -21.742 22.712 -1.854 2.676 -0.021 C05 A1ALM 8 A1ALM C06 C9 C 0 1 N N N N N N 13.327 -21.371 22.925 -3.284 3.101 0.318 C06 A1ALM 9 A1ALM C07 C10 C 0 1 N N N N N N 14.109 -21.441 21.608 -3.535 2.897 1.814 C07 A1ALM 10 A1ALM C08 C11 C 0 1 N N N N N N 13.975 -22.248 23.999 -3.474 4.578 -0.033 C08 A1ALM 11 A1ALM C09 C12 C 0 1 N N N N N N 9.703 -21.095 21.588 -2.559 0.436 -0.818 C09 A1ALM 12 A1ALM C11 C13 C 0 1 N N S N N N 7.945 -21.805 19.955 -4.719 -0.379 -1.595 C11 A1ALM 13 A1ALM C12 C14 C 0 1 N N N N N N 7.410 -20.971 18.793 -6.050 -0.720 -0.923 C12 A1ALM 14 A1ALM C14 C15 C 0 1 N N N N N N 6.907 -18.667 18.094 -7.097 -1.971 0.972 C14 A1ALM 15 A1ALM C16 C16 C 0 1 N N N N N N 5.299 -18.704 19.823 -5.918 -3.966 0.814 C16 A1ALM 16 A1ALM C19 C17 C 0 1 N N N N N N 7.934 -23.282 19.592 -4.979 0.411 -2.852 C19 A1ALM 17 A1ALM C23 C18 C 0 1 Y N N N N N 12.132 -16.337 22.977 2.459 0.236 -0.420 C23 A1ALM 18 A1ALM C25 C19 C 0 1 Y N N N N N 11.299 -14.018 23.375 4.675 0.018 0.477 C25 A1ALM 19 A1ALM C27 C20 C 0 1 Y N N N N N 12.406 -12.304 24.993 6.604 -0.576 -0.992 C27 A1ALM 20 A1ALM C29 C21 C 0 1 Y N N N N N 12.013 -9.994 25.046 8.751 -0.801 -0.175 C29 A1ALM 21 A1ALM C31 C22 C 0 1 N N N N N N 13.343 -8.653 26.499 10.422 -1.371 -1.764 C31 A1ALM 22 A1ALM C32 C23 C 0 1 Y N N N N N 11.101 -10.140 23.990 8.339 -0.495 1.118 C32 A1ALM 23 A1ALM C33 C24 C 0 1 Y N N N N N 10.880 -11.429 23.462 7.006 -0.223 1.355 C33 A1ALM 24 A1ALM C34 C25 C 0 1 Y N N N N N 10.143 -14.467 22.698 4.199 0.338 1.749 C34 A1ALM 25 A1ALM C35 C26 C 0 1 Y N N N N N 9.979 -15.776 22.189 2.862 0.603 1.937 C35 A1ALM 26 A1ALM N03 N1 N 0 1 N N N N N N 11.325 -19.329 22.319 -0.304 0.785 0.010 N03 A1ALM 27 A1ALM N10 N2 N 0 1 N N N N N N 9.292 -21.415 20.297 -3.899 0.417 -0.679 N10 A1ALM 28 A1ALM N15 N3 N 0 1 N N N N N N 5.648 -18.222 18.472 -7.141 -3.285 1.254 N15 A1ALM 29 A1ALM N20 N4 N 0 1 N N N N N N 6.938 -24.076 19.717 -4.500 1.591 -2.977 N20 A1ALM 30 A1ALM N28 N5 N 0 1 Y N N N N N 12.662 -11.088 25.544 7.885 -0.829 -1.175 N28 A1ALM 31 A1ALM O01 O1 O 0 1 N N N N N N 10.130 -18.327 20.713 0.130 1.114 2.163 O01 A1ALM 32 A1ALM O18 O2 O 0 1 N N N N N N 7.441 -18.411 17.016 -7.973 -1.174 1.234 O18 A1ALM 33 A1ALM O21 O3 O 0 1 N N N N N N 8.912 -21.118 22.544 -2.038 -0.135 -1.752 O21 A1ALM 34 A1ALM O30 O4 O 0 1 N N N N N N 12.263 -8.754 25.593 10.058 -1.069 -0.415 O30 A1ALM 35 A1ALM H131 H1 H 0 0 N N N N N N 8.524 -19.207 19.461 -5.103 -1.158 0.976 H131 A1ALM 36 A1ALM H172 H2 H 0 0 N N N N N N 7.005 -18.758 21.180 -5.553 -3.217 -1.207 H172 A1ALM 37 A1ALM H171 H3 H 0 0 N N N N N N 6.310 -20.370 20.801 -4.159 -3.035 -0.091 H171 A1ALM 38 A1ALM H241 H4 H 0 0 N N N N N N 13.211 -14.780 23.976 4.168 -0.272 -1.591 H241 A1ALM 39 A1ALM H041 H5 H 0 0 N N N N N N 11.677 -20.754 20.804 -2.030 0.907 1.195 H041 A1ALM 40 A1ALM H052 H6 H 0 0 N N N N N N 11.778 -22.739 22.252 -1.154 3.203 0.628 H052 A1ALM 41 A1ALM H051 H7 H 0 0 N N N N N N 11.326 -21.751 23.682 -1.639 2.922 -1.061 H051 A1ALM 42 A1ALM H061 H8 H 0 0 N N N N N N 13.361 -20.330 23.278 -3.988 2.498 -0.255 H061 A1ALM 43 A1ALM H073 H9 H 0 0 N N N N N N 13.621 -20.802 20.857 -4.572 3.141 2.044 H073 A1ALM 44 A1ALM H072 H10 H 0 0 N N N N N N 15.138 -21.091 21.774 -3.339 1.857 2.076 H072 A1ALM 45 A1ALM H071 H11 H 0 0 N N N N N N 14.129 -22.480 21.248 -2.873 3.547 2.386 H071 A1ALM 46 A1ALM H083 H12 H 0 0 N N N N N N 13.394 -22.178 24.930 -3.295 4.724 -1.099 H083 A1ALM 47 A1ALM H082 H13 H 0 0 N N N N N N 13.994 -23.293 23.656 -4.493 4.881 0.209 H082 A1ALM 48 A1ALM H081 H14 H 0 0 N N N N N N 15.003 -21.903 24.182 -2.770 5.182 0.539 H081 A1ALM 49 A1ALM H111 H15 H 0 0 N N N N N N 7.287 -21.654 20.823 -4.193 -1.299 -1.848 H111 A1ALM 50 A1ALM H121 H16 H 0 0 N N N N N N 6.365 -21.242 18.584 -6.697 -1.232 -1.635 H121 A1ALM 51 A1ALM H122 H17 H 0 0 N N N N N N 8.020 -21.143 17.894 -6.534 0.198 -0.587 H122 A1ALM 52 A1ALM H161 H18 H 0 0 N N N N N N 4.473 -19.428 19.765 -6.166 -4.905 0.321 H161 A1ALM 53 A1ALM H162 H19 H 0 0 N N N N N N 5.001 -17.859 20.461 -5.260 -4.148 1.664 H162 A1ALM 54 A1ALM H191 H20 H 0 0 N N N N N N 8.848 -23.698 19.193 -5.571 -0.018 -3.647 H191 A1ALM 55 A1ALM H231 H21 H 0 0 N N N N N N 12.940 -17.041 23.109 1.780 0.199 -1.259 H231 A1ALM 56 A1ALM H271 H22 H 0 0 N N N N N N 12.946 -13.140 25.412 5.927 -0.609 -1.832 H271 A1ALM 57 A1ALM H311 H23 H 0 0 N N N N N N 13.428 -7.616 26.855 9.876 -2.253 -2.099 H311 A1ALM 58 A1ALM H312 H24 H 0 0 N N N N N N 13.167 -9.321 27.355 10.173 -0.525 -2.405 H312 A1ALM 59 A1ALM H313 H25 H 0 0 N N N N N N 14.275 -8.944 25.992 11.493 -1.565 -1.817 H313 A1ALM 60 A1ALM H321 H26 H 0 0 N N N N N N 10.579 -9.283 23.590 9.054 -0.475 1.928 H321 A1ALM 61 A1ALM H331 H27 H 0 0 N N N N N N 10.181 -11.526 22.644 6.660 0.018 2.349 H331 A1ALM 62 A1ALM H341 H28 H 0 0 N N N N N N 9.333 -13.766 22.561 4.881 0.378 2.586 H341 A1ALM 63 A1ALM H351 H29 H 0 0 N N N N N N 9.056 -16.025 21.687 2.494 0.850 2.922 H351 A1ALM 64 A1ALM H031 H30 H 0 0 N N N N N N 11.855 -19.223 23.160 0.013 0.495 -0.860 H031 A1ALM 65 A1ALM H101 H31 H 0 0 N N N N N N 9.970 -21.372 19.563 -4.321 0.931 0.028 H101 A1ALM 66 A1ALM H151 H32 H 0 0 N N N N N N 5.056 -17.650 17.904 -7.885 -3.726 1.693 H151 A1ALM 67 A1ALM H201 H33 H 0 0 N N N N N N 7.158 -25.004 19.416 -4.667 2.099 -3.786 H201 A1ALM 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALM C02 O01 DOUB N N 1 A1ALM C07 C06 SING N N 2 A1ALM C08 C06 SING N N 3 A1ALM C06 C05 SING N N 4 A1ALM C05 C04 SING N N 5 A1ALM C09 C04 SING N N 6 A1ALM C14 C13 SING N N 7 A1ALM C17 C16 SING N N 8 A1ALM C16 N15 SING N N 9 A1ALM N15 C14 SING N N 10 A1ALM O18 C14 DOUB N N 11 A1ALM C13 C12 SING N N 12 A1ALM C12 C11 SING N N 13 A1ALM C19 C11 SING N N 14 A1ALM N20 C19 DOUB N N 15 A1ALM C11 N10 SING N N 16 A1ALM N10 C09 SING N N 17 A1ALM O21 C09 DOUB N N 18 A1ALM C04 N03 SING N N 19 A1ALM N03 C02 SING N N 20 A1ALM C22 C02 SING N N 21 A1ALM C23 C22 DOUB Y N 22 A1ALM C27 C26 DOUB Y N 23 A1ALM C29 N28 DOUB Y N 24 A1ALM C31 O30 SING N N 25 A1ALM O30 C29 SING N N 26 A1ALM C32 C29 SING Y N 27 A1ALM C33 C32 DOUB Y N 28 A1ALM N28 C27 SING Y N 29 A1ALM C26 C25 SING N N 30 A1ALM C34 C25 SING Y N 31 A1ALM C35 C34 DOUB Y N 32 A1ALM C25 C24 DOUB Y N 33 A1ALM C24 C23 SING Y N 34 A1ALM C13 C17 SING N N 35 A1ALM C22 C35 SING Y N 36 A1ALM C26 C33 SING Y N 37 A1ALM C13 H131 SING N N 38 A1ALM C17 H172 SING N N 39 A1ALM C17 H171 SING N N 40 A1ALM C24 H241 SING N N 41 A1ALM C04 H041 SING N N 42 A1ALM C05 H052 SING N N 43 A1ALM C05 H051 SING N N 44 A1ALM C06 H061 SING N N 45 A1ALM C07 H073 SING N N 46 A1ALM C07 H072 SING N N 47 A1ALM C07 H071 SING N N 48 A1ALM C08 H083 SING N N 49 A1ALM C08 H082 SING N N 50 A1ALM C08 H081 SING N N 51 A1ALM C11 H111 SING N N 52 A1ALM C12 H121 SING N N 53 A1ALM C12 H122 SING N N 54 A1ALM C16 H161 SING N N 55 A1ALM C16 H162 SING N N 56 A1ALM C19 H191 SING N N 57 A1ALM C23 H231 SING N N 58 A1ALM C27 H271 SING N N 59 A1ALM C31 H311 SING N N 60 A1ALM C31 H312 SING N N 61 A1ALM C31 H313 SING N N 62 A1ALM C32 H321 SING N N 63 A1ALM C33 H331 SING N N 64 A1ALM C34 H341 SING N N 65 A1ALM C35 H351 SING N N 66 A1ALM N03 H031 SING N N 67 A1ALM N10 H101 SING N N 68 A1ALM N15 H151 SING N N 69 A1ALM N20 H201 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALM SMILES ACDLabs 12.01 "COc1ccc(cn1)c1ccc(cc1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=N" A1ALM InChI InChI 1.06 "InChI=1S/C26H33N5O4/c1-16(2)12-22(26(34)30-21(14-27)13-19-10-11-28-24(19)32)31-25(33)18-6-4-17(5-7-18)20-8-9-23(35-3)29-15-20/h4-9,14-16,19,21-22,27H,10-13H2,1-3H3,(H,28,32)(H,30,34)(H,31,33)/b27-14+/t19-,21-,22-/m0/s1" A1ALM InChIKey InChI 1.06 NQIDETVWOWSWJR-ZFEVDKSVSA-N A1ALM SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cn1)c2ccc(cc2)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N" A1ALM SMILES CACTVS 3.385 "COc1ccc(cn1)c2ccc(cc2)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=N" A1ALM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3ccc(nc3)OC" A1ALM SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3ccc(nc3)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALM "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(6-methoxypyridin-3-yl)benzoyl]-L-leucinamide" A1ALM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(6-methoxypyridin-3-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALM "Create component" 2024-04-09 RCSB A1ALM "Modify PCM" 2024-09-27 PDBE A1ALM "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALM _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #