data_A1ALN # _chem_comp.id A1ALN _chem_comp.name "N-{(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(1-methyl-1H-indazol-5-yl)benzoyl]-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.608 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALN C13 C1 C 0 1 N N S N N N 7.095 -20.722 19.335 6.620 -1.352 -0.614 C13 A1ALN 1 A1ALN C17 C2 C 0 1 N N N N N N 5.901 -20.665 20.293 6.132 -2.819 -0.588 C17 A1ALN 2 A1ALN C22 C3 C 0 1 Y N N N N N 10.490 -18.075 22.573 -1.402 0.734 -0.486 C22 A1ALN 3 A1ALN C24 C4 C 0 1 Y N N N N N 9.590 -15.905 23.145 -3.122 -0.361 0.784 C24 A1ALN 4 A1ALN C26 C5 C 0 1 Y N N N N N 11.001 -14.135 24.265 -5.492 -0.330 0.013 C26 A1ALN 5 A1ALN C28 C6 C 0 1 Y N N N N N 12.137 -12.661 25.888 -7.194 -1.426 1.306 C28 A1ALN 6 A1ALN C02 C7 C 0 1 N N N N N N 10.301 -19.390 21.935 0.017 1.103 -0.659 C02 A1ALN 7 A1ALN C04 C8 C 0 1 N N S N N N 10.694 -21.871 22.099 2.339 1.077 0.079 C04 A1ALN 8 A1ALN C05 C9 C 0 1 N N N N N N 11.263 -22.813 23.109 2.577 2.473 0.658 C05 A1ALN 9 A1ALN C06 C10 C 0 1 N N N N N N 12.704 -22.347 23.475 1.789 3.503 -0.154 C06 A1ALN 10 A1ALN C07 C11 C 0 1 N N N N N N 13.555 -22.228 22.195 1.927 4.880 0.498 C07 A1ALN 11 A1ALN C08 C12 C 0 1 N N N N N N 13.391 -23.369 24.422 2.340 3.557 -1.581 C08 A1ALN 12 A1ALN C09 C13 C 0 1 N N N N N N 9.250 -22.209 21.732 3.209 0.079 0.799 C09 A1ALN 13 A1ALN C11 C14 C 0 1 N N S N N N 7.751 -23.097 20.019 5.395 -0.754 1.480 C11 A1ALN 14 A1ALN C12 C15 C 0 1 N N N N N N 7.335 -22.169 18.846 6.769 -0.811 0.809 C12 A1ALN 15 A1ALN C14 C16 C 0 1 N N N N N N 6.630 -19.926 18.110 7.967 -1.421 -1.299 C14 A1ALN 16 A1ALN C16 C17 C 0 1 N N N N N N 5.220 -19.317 19.904 6.904 -3.429 -1.779 C16 A1ALN 17 A1ALN C19 C18 C 0 1 N N N N N N 7.763 -24.567 19.506 5.556 -0.334 2.918 C19 A1ALN 18 A1ALN C23 C19 C 0 1 Y N N N N N 9.402 -17.172 22.577 -1.799 -0.017 0.624 C23 A1ALN 19 A1ALN C25 C20 C 0 1 Y N N N N N 10.824 -15.463 23.704 -4.067 0.041 -0.161 C25 A1ALN 20 A1ALN C27 C21 C 0 1 Y N N N N N 11.927 -13.890 25.334 -5.888 -1.077 1.130 C27 A1ALN 21 A1ALN C29 C22 C 0 1 Y N N N N N 11.413 -11.565 25.406 -8.154 -1.041 0.371 C29 A1ALN 22 A1ALN C30 C23 C 0 1 Y N N N N N 10.484 -11.753 24.352 -7.770 -0.284 -0.754 C30 A1ALN 23 A1ALN C31 C24 C 0 1 Y N N N N N 10.314 -13.040 23.796 -6.430 0.070 -0.928 C31 A1ALN 24 A1ALN C32 C25 C 0 1 Y N N N N N 9.950 -10.421 24.147 -8.988 -0.047 -1.524 C32 A1ALN 25 A1ALN C35 C26 C 0 1 N N N N N N 12.194 -9.607 26.826 -10.333 -1.967 1.235 C35 A1ALN 26 A1ALN C36 C27 C 0 1 Y N N N N N 11.860 -16.406 23.632 -3.673 0.795 -1.266 C36 A1ALN 27 A1ALN C37 C28 C 0 1 Y N N N N N 11.689 -17.659 23.082 -2.350 1.140 -1.429 C37 A1ALN 28 A1ALN N03 N1 N 0 1 N N N N N N 10.758 -20.505 22.633 0.931 0.711 0.251 N03 A1ALN 29 A1ALN N10 N2 N 0 1 N N N N N N 9.131 -22.760 20.434 4.550 0.216 0.779 N10 A1ALN 30 A1ALN N15 N3 N 0 1 N N N N N N 5.554 -19.127 18.483 8.101 -2.596 -1.938 N15 A1ALN 31 A1ALN N20 N4 N 0 1 N N N N N N 6.850 -25.436 19.705 4.987 0.731 3.341 N20 A1ALN 32 A1ALN N33 N5 N 0 1 Y N N N N N 10.508 -9.551 25.010 -9.974 -0.619 -0.893 N33 A1ALN 33 A1ALN N34 N6 N 0 1 Y N N N N N 11.393 -10.240 25.772 -9.507 -1.234 0.273 N34 A1ALN 34 A1ALN O01 O1 O 0 1 N N N N N N 9.842 -19.426 20.838 0.361 1.760 -1.622 O01 A1ALN 35 A1ALN O18 O2 O 0 1 N N N N N N 7.105 -19.957 17.008 8.804 -0.544 -1.275 O18 A1ALN 36 A1ALN O21 O3 O 0 1 N N N N N N 8.285 -22.058 22.428 2.703 -0.846 1.398 O21 A1ALN 37 A1ALN H131 H1 H 0 0 N N N N N N 8.001 -20.290 19.784 5.931 -0.731 -1.187 H131 A1ALN 38 A1ALN H171 H2 H 0 0 N N N N N N 6.233 -20.655 21.342 6.411 -3.305 0.347 H171 A1ALN 39 A1ALN H172 H3 H 0 0 N N N N N N 5.221 -21.515 20.132 5.056 -2.875 -0.750 H172 A1ALN 40 A1ALN H241 H4 H 0 0 N N N N N N 8.752 -15.224 23.160 -3.429 -0.941 1.641 H241 A1ALN 41 A1ALN H281 H5 H 0 0 N N N N N N 12.852 -12.536 26.688 -7.485 -2.003 2.171 H281 A1ALN 42 A1ALN H041 H6 H 0 0 N N N N N N 11.303 -21.926 21.185 2.588 1.076 -0.982 H041 A1ALN 43 A1ALN H052 H7 H 0 0 N N N N N N 11.299 -23.829 22.688 2.245 2.497 1.696 H052 A1ALN 44 A1ALN H051 H8 H 0 0 N N N N N N 10.634 -22.812 24.011 3.640 2.709 0.611 H051 A1ALN 45 A1ALN H061 H9 H 0 0 N N N N N N 12.653 -21.368 23.973 0.738 3.217 -0.181 H061 A1ALN 46 A1ALN H073 H10 H 0 0 N N N N N N 13.086 -21.508 21.508 2.979 5.166 0.525 H073 A1ALN 47 A1ALN H072 H11 H 0 0 N N N N N N 14.565 -21.880 22.457 1.366 5.614 -0.080 H072 A1ALN 48 A1ALN H071 H12 H 0 0 N N N N N N 13.621 -23.211 21.706 1.535 4.842 1.514 H071 A1ALN 49 A1ALN H082 H13 H 0 0 N N N N N N 12.800 -23.470 25.344 2.242 2.576 -2.045 H082 A1ALN 50 A1ALN H083 H14 H 0 0 N N N N N N 13.458 -24.346 23.921 1.778 4.291 -2.159 H083 A1ALN 51 A1ALN H081 H15 H 0 0 N N N N N N 14.402 -23.015 24.672 3.391 3.843 -1.554 H081 A1ALN 52 A1ALN H111 H16 H 0 0 N N N N N N 7.045 -22.993 20.856 4.930 -1.739 1.438 H111 A1ALN 53 A1ALN H121 H17 H 0 0 N N N N N N 6.408 -22.554 18.396 7.426 -1.468 1.380 H121 A1ALN 54 A1ALN H122 H18 H 0 0 N N N N N N 8.135 -22.164 18.091 7.198 0.190 0.774 H122 A1ALN 55 A1ALN H162 H19 H 0 0 N N N N N N 4.130 -19.379 20.042 7.187 -4.458 -1.558 H162 A1ALN 56 A1ALN H161 H20 H 0 0 N N N N N N 5.620 -18.491 20.510 6.295 -3.390 -2.682 H161 A1ALN 57 A1ALN H191 H21 H 0 0 N N N N N N 8.621 -24.879 18.930 6.151 -0.933 3.592 H191 A1ALN 58 A1ALN H231 H22 H 0 0 N N N N N N 8.449 -17.452 22.153 -1.068 -0.328 1.355 H231 A1ALN 59 A1ALN H271 H23 H 0 0 N N N N N N 12.490 -14.726 25.722 -5.151 -1.380 1.858 H271 A1ALN 60 A1ALN H311 H24 H 0 0 N N N N N N 9.622 -13.168 22.976 -6.127 0.650 -1.787 H311 A1ALN 61 A1ALN H321 H25 H 0 0 N N N N N N 9.208 -10.163 23.406 -9.059 0.503 -2.451 H321 A1ALN 62 A1ALN H351 H26 H 0 0 N N N N N N 11.954 -8.535 26.876 -10.700 -1.280 1.998 H351 A1ALN 63 A1ALN H352 H27 H 0 0 N N N N N N 11.966 -10.079 27.793 -11.179 -2.420 0.717 H352 A1ALN 64 A1ALN H353 H28 H 0 0 N N N N N N 13.263 -9.733 26.600 -9.735 -2.747 1.706 H353 A1ALN 65 A1ALN H361 H29 H 0 0 N N N N N N 12.831 -16.140 24.023 -4.406 1.109 -1.995 H361 A1ALN 66 A1ALN H371 H30 H 0 0 N N N N N N 12.531 -18.335 23.052 -2.045 1.724 -2.284 H371 A1ALN 67 A1ALN H031 H31 H 0 0 N N N N N N 11.149 -20.368 23.543 0.657 0.186 1.019 H031 A1ALN 68 A1ALN H101 H32 H 0 0 N N N N N N 9.922 -22.911 19.841 4.955 0.956 0.301 H101 A1ALN 69 A1ALN H151 H33 H 0 0 N N N N N N 5.071 -18.505 17.867 8.888 -2.859 -2.440 H151 A1ALN 70 A1ALN H201 H34 H 0 0 N N N N N N 7.071 -26.315 19.282 5.090 1.001 4.267 H201 A1ALN 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALN C02 O01 DOUB N N 1 A1ALN C07 C06 SING N N 2 A1ALN C08 C06 SING N N 3 A1ALN C06 C05 SING N N 4 A1ALN C05 C04 SING N N 5 A1ALN C09 C04 SING N N 6 A1ALN C14 C13 SING N N 7 A1ALN C17 C16 SING N N 8 A1ALN C16 N15 SING N N 9 A1ALN N15 C14 SING N N 10 A1ALN O18 C14 DOUB N N 11 A1ALN C13 C12 SING N N 12 A1ALN C12 C11 SING N N 13 A1ALN C19 C11 SING N N 14 A1ALN N20 C19 DOUB N N 15 A1ALN C11 N10 SING N N 16 A1ALN N10 C09 SING N N 17 A1ALN O21 C09 DOUB N N 18 A1ALN C04 N03 SING N N 19 A1ALN N03 C02 SING N N 20 A1ALN C22 C02 SING N N 21 A1ALN C23 C22 DOUB Y N 22 A1ALN C27 C26 DOUB Y N 23 A1ALN C30 C29 SING Y N 24 A1ALN C31 C30 DOUB Y N 25 A1ALN C32 C30 SING Y N 26 A1ALN N34 N33 SING Y N 27 A1ALN C35 N34 SING N N 28 A1ALN N33 C32 DOUB Y N 29 A1ALN C29 C28 DOUB Y N 30 A1ALN C28 C27 SING Y N 31 A1ALN C26 C25 SING N N 32 A1ALN C36 C25 SING Y N 33 A1ALN C37 C36 DOUB Y N 34 A1ALN C25 C24 DOUB Y N 35 A1ALN C24 C23 SING Y N 36 A1ALN C13 C17 SING N N 37 A1ALN C22 C37 SING Y N 38 A1ALN C26 C31 SING Y N 39 A1ALN C29 N34 SING Y N 40 A1ALN C13 H131 SING N N 41 A1ALN C17 H171 SING N N 42 A1ALN C17 H172 SING N N 43 A1ALN C24 H241 SING N N 44 A1ALN C28 H281 SING N N 45 A1ALN C04 H041 SING N N 46 A1ALN C05 H052 SING N N 47 A1ALN C05 H051 SING N N 48 A1ALN C06 H061 SING N N 49 A1ALN C07 H073 SING N N 50 A1ALN C07 H072 SING N N 51 A1ALN C07 H071 SING N N 52 A1ALN C08 H082 SING N N 53 A1ALN C08 H083 SING N N 54 A1ALN C08 H081 SING N N 55 A1ALN C11 H111 SING N N 56 A1ALN C12 H121 SING N N 57 A1ALN C12 H122 SING N N 58 A1ALN C16 H162 SING N N 59 A1ALN C16 H161 SING N N 60 A1ALN C19 H191 SING N N 61 A1ALN C23 H231 SING N N 62 A1ALN C27 H271 SING N N 63 A1ALN C31 H311 SING N N 64 A1ALN C32 H321 SING N N 65 A1ALN C35 H351 SING N N 66 A1ALN C35 H352 SING N N 67 A1ALN C35 H353 SING N N 68 A1ALN C36 H361 SING N N 69 A1ALN C37 H371 SING N N 70 A1ALN N03 H031 SING N N 71 A1ALN N10 H101 SING N N 72 A1ALN N15 H151 SING N N 73 A1ALN N20 H201 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALN SMILES ACDLabs 12.01 "O=C1NCCC1CC(C=N)NC(=O)C(CC(C)C)NC(=O)c1ccc(cc1)c1cc2cnn(C)c2cc1" A1ALN InChI InChI 1.06 "InChI=1S/C28H34N6O3/c1-17(2)12-24(28(37)32-23(15-29)14-21-10-11-30-26(21)35)33-27(36)19-6-4-18(5-7-19)20-8-9-25-22(13-20)16-31-34(25)3/h4-9,13,15-17,21,23-24,29H,10-12,14H2,1-3H3,(H,30,35)(H,32,37)(H,33,36)/b29-15+/t21-,23-,24-/m0/s1" A1ALN InChIKey InChI 1.06 SZGLKCUCZFGXMB-UUJZHRNQSA-N A1ALN SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)c1ccc(cc1)c2ccc3n(C)ncc3c2)C(=O)N[C@@H](C[C@@H]4CCNC4=O)C=N" A1ALN SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)c1ccc(cc1)c2ccc3n(C)ncc3c2)C(=O)N[CH](C[CH]4CCNC4=O)C=N" A1ALN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3ccc4c(c3)cnn4C" A1ALN SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3ccc4c(c3)cnn4C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALN "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(2R)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(1-methyl-1H-indazol-5-yl)benzoyl]-L-leucinamide" A1ALN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(1-methylindazol-5-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALN "Create component" 2024-04-09 RCSB A1ALN "Modify PCM" 2024-09-27 PDBE A1ALN "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALN _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #