data_A1ALX # _chem_comp.id A1ALX _chem_comp.name "3-chloro-N-[(2R)-1-({(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-methoxy[1,1'-biphenyl]-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-10 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 513.028 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ALX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BC0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ALX C10 C1 C 0 1 Y N N N N N -15.756 4.496 0.190 -1.788 -0.743 0.298 C10 A1ALX 1 A1ALX N12 N1 N 0 1 N N N N N N -16.101 1.902 0.246 0.522 -0.986 -0.467 N12 A1ALX 2 A1ALX C13 C2 C 0 1 N N S N N N -15.937 0.603 0.859 1.931 -1.302 -0.220 C13 A1ALX 3 A1ALX C15 C3 C 0 1 N N N N N N -18.179 0.006 -0.136 3.625 -3.139 -0.170 C15 A1ALX 4 A1ALX C17 C4 C 0 1 N N N N N N -18.886 -0.723 -1.260 3.941 -4.552 -0.664 C17 A1ALX 5 A1ALX C20 C5 C 0 1 N N S N N N -12.691 -0.949 2.575 4.919 0.690 -1.543 C20 A1ALX 6 A1ALX C21 C6 C 0 1 N N N N N N -12.025 -0.011 3.632 6.118 1.135 -0.704 C21 A1ALX 7 A1ALX C22 C7 C 0 1 N N S N N N -12.144 1.569 3.236 5.625 1.909 0.520 C22 A1ALX 8 A1ALX C26 C8 C 0 1 N N N N N N -11.380 1.854 2.248 4.944 3.229 0.088 C26 A1ALX 9 A1ALX C28 C9 C 0 1 N N N N N N -12.732 -2.323 3.107 5.407 0.008 -2.795 C28 A1ALX 10 A1ALX C01 C10 C 0 1 N N N N N N -16.523 13.191 -2.662 -10.652 1.413 0.163 C01 A1ALX 11 A1ALX C03 C11 C 0 1 Y N N N N N -17.012 10.903 -2.706 -8.451 1.243 -0.719 C03 A1ALX 12 A1ALX C04 C12 C 0 1 Y N N N N N -17.640 9.810 -3.230 -8.077 0.667 0.488 C04 A1ALX 13 A1ALX C05 C13 C 0 1 Y N N N N N -17.416 8.549 -2.693 -6.770 0.276 0.691 C05 A1ALX 14 A1ALX C06 C14 C 0 1 Y N N N N N -16.545 8.403 -1.626 -5.824 0.460 -0.317 C06 A1ALX 15 A1ALX C07 C15 C 0 1 Y N N N N N -16.265 6.995 -0.980 -4.419 0.041 -0.102 C07 A1ALX 16 A1ALX C08 C16 C 0 1 Y N N N N N -14.972 6.656 -0.589 -4.041 -0.534 1.111 C08 A1ALX 17 A1ALX C09 C17 C 0 1 Y N N N N N -14.712 5.396 0.004 -2.736 -0.928 1.310 C09 A1ALX 18 A1ALX C11 C18 C 0 1 N N N N N N -15.530 3.099 0.854 -0.390 -1.165 0.509 C11 A1ALX 19 A1ALX C14 C19 C 0 1 N N N N N N -16.684 -0.408 -0.025 2.191 -2.772 -0.558 C14 A1ALX 20 A1ALX C16 C20 C 0 1 N N N N N N -18.903 -0.224 1.232 3.770 -3.087 1.353 C16 A1ALX 21 A1ALX C18 C21 C 0 1 N N N N N N -14.470 0.198 1.048 2.802 -0.427 -1.083 C18 A1ALX 22 A1ALX C23 C22 C 0 1 N N N N N N -11.680 2.497 4.476 6.794 2.357 1.370 C23 A1ALX 23 A1ALX C25 C23 C 0 1 N N N N N N -10.061 2.779 2.819 5.379 4.192 1.215 C25 A1ALX 24 A1ALX C32 C24 C 0 1 Y N N N N N -17.051 4.839 -0.190 -2.169 -0.162 -0.915 C32 A1ALX 25 A1ALX C33 C25 C 0 1 Y N N N N N -17.309 6.099 -0.783 -3.474 0.227 -1.112 C33 A1ALX 26 A1ALX C35 C26 C 0 1 Y N N N N N -15.919 9.497 -1.098 -6.203 1.040 -1.527 C35 A1ALX 27 A1ALX C36 C27 C 0 1 Y N N N N N -16.144 10.752 -1.634 -7.512 1.423 -1.726 C36 A1ALX 28 A1ALX N19 N2 N 0 1 N N N N N N -14.088 -0.511 2.301 4.099 -0.244 -0.766 N19 A1ALX 29 A1ALX N24 N3 N 0 1 N N N N N N -10.327 3.207 4.033 6.633 3.639 1.740 N24 A1ALX 30 A1ALX N29 N4 N 0 1 N N N N N N -11.808 -3.094 2.922 5.083 -1.208 -3.028 N29 A1ALX 31 A1ALX O02 O1 O 0 1 N N N N N N -17.243 12.172 -3.251 -9.739 1.627 -0.916 O02 A1ALX 32 A1ALX O27 O2 O 0 1 N N N N N N -12.240 2.625 5.502 7.739 1.659 1.674 O27 A1ALX 33 A1ALX O30 O3 O 0 1 N N N N N N -13.656 0.453 0.208 2.336 0.114 -2.064 O30 A1ALX 34 A1ALX O31 O4 O 0 1 N N N N N N -14.929 3.020 1.857 -0.061 -1.675 1.562 O31 A1ALX 35 A1ALX CL34 CL1 CL 0 0 N N N N N N -13.028 4.981 0.495 -2.268 -1.656 2.815 CL34 A1ALX 36 A1ALX H121 H1 H 0 0 N N N N N N -16.614 1.981 -0.609 0.246 -0.647 -1.333 H121 A1ALX 37 A1ALX H131 H2 H 0 0 N N N N N N -16.418 0.608 1.848 2.165 -1.125 0.830 H131 A1ALX 38 A1ALX H151 H3 H 0 0 N N N N N N -18.212 1.084 -0.352 4.317 -2.431 -0.625 H151 A1ALX 39 A1ALX H172 H4 H 0 0 N N N N N N -19.937 -0.401 -1.302 3.837 -4.589 -1.748 H172 A1ALX 40 A1ALX H171 H5 H 0 0 N N N N N N -18.393 -0.490 -2.215 4.962 -4.814 -0.387 H171 A1ALX 41 A1ALX H173 H6 H 0 0 N N N N N N -18.842 -1.807 -1.079 3.248 -5.260 -0.208 H173 A1ALX 42 A1ALX H201 H7 H 0 0 N N N N N N -12.100 -0.919 1.648 4.321 1.560 -1.813 H201 A1ALX 43 A1ALX H212 H8 H 0 0 N N N N N N -10.960 -0.274 3.715 6.679 0.259 -0.378 H212 A1ALX 44 A1ALX H211 H9 H 0 0 N N N N N N -12.518 -0.169 4.603 6.763 1.777 -1.304 H211 A1ALX 45 A1ALX H221 H10 H 0 0 N N N N N N -13.203 1.784 3.031 4.937 1.299 1.105 H221 A1ALX 46 A1ALX H261 H11 H 0 0 N N N N N N -11.942 2.434 1.501 5.321 3.564 -0.878 H261 A1ALX 47 A1ALX H262 H12 H 0 0 N N N N N N -11.009 0.926 1.788 3.860 3.119 0.066 H262 A1ALX 48 A1ALX H281 H13 H 0 0 N N N N N N -13.594 -2.651 3.669 6.030 0.545 -3.494 H281 A1ALX 49 A1ALX H013 H14 H 0 0 N N N N N N -16.768 14.145 -3.152 -10.696 0.349 0.396 H013 A1ALX 50 A1ALX H011 H15 H 0 0 N N N N N N -16.780 13.251 -1.594 -10.313 1.964 1.040 H011 A1ALX 51 A1ALX H012 H16 H 0 0 N N N N N N -15.447 12.989 -2.770 -11.643 1.763 -0.126 H012 A1ALX 52 A1ALX H041 H17 H 0 0 N N N N N N -18.314 9.926 -4.066 -8.810 0.524 1.268 H041 A1ALX 53 A1ALX H051 H18 H 0 0 N N N N N N -17.918 7.686 -3.105 -6.480 -0.172 1.630 H051 A1ALX 54 A1ALX H081 H19 H 0 0 N N N N N N -14.164 7.357 -0.739 -4.772 -0.673 1.894 H081 A1ALX 55 A1ALX H141 H20 H 0 0 N N N N N N -16.613 -1.410 0.424 1.492 -3.401 -0.006 H141 A1ALX 56 A1ALX H142 H21 H 0 0 N N N N N N -16.232 -0.422 -1.028 2.053 -2.928 -1.628 H142 A1ALX 57 A1ALX H162 H22 H 0 0 N N N N N N -19.959 0.072 1.143 4.808 -3.277 1.625 H162 A1ALX 58 A1ALX H163 H23 H 0 0 N N N N N N -18.842 -1.288 1.505 3.475 -2.101 1.712 H163 A1ALX 59 A1ALX H161 H24 H 0 0 N N N N N N -18.417 0.382 2.010 3.130 -3.845 1.805 H161 A1ALX 60 A1ALX H251 H25 H 0 0 N N N N N N -9.899 3.639 2.153 5.546 5.191 0.813 H251 A1ALX 61 A1ALX H252 H26 H 0 0 N N N N N N -9.155 2.155 2.839 4.622 4.221 1.999 H252 A1ALX 62 A1ALX H321 H27 H 0 0 N N N N N N -17.861 4.142 -0.032 -1.438 -0.017 -1.697 H321 A1ALX 63 A1ALX H331 H28 H 0 0 N N N N N N -18.313 6.363 -1.081 -3.768 0.672 -2.051 H331 A1ALX 64 A1ALX H351 H29 H 0 0 N N N N N N -15.247 9.381 -0.260 -5.473 1.184 -2.310 H351 A1ALX 65 A1ALX H361 H30 H 0 0 N N N N N N -15.644 11.614 -1.218 -7.808 1.867 -2.665 H361 A1ALX 66 A1ALX H191 H31 H 0 0 N N N N N N -14.795 -0.700 2.983 4.490 -0.730 -0.023 H191 A1ALX 67 A1ALX H241 H32 H 0 0 N N N N N N -9.785 3.852 4.572 7.264 4.135 2.285 H241 A1ALX 68 A1ALX H291 H33 H 0 0 N N N N N N -11.976 -3.987 3.340 5.398 -1.647 -3.834 H291 A1ALX 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ALX O02 C01 SING N N 1 A1ALX C03 O02 SING N N 2 A1ALX C04 C03 DOUB Y N 3 A1ALX C05 C04 SING Y N 4 A1ALX C06 C05 DOUB Y N 5 A1ALX C08 C07 DOUB Y N 6 A1ALX C09 C08 SING Y N 7 A1ALX C13 N12 SING N N 8 A1ALX C15 C14 SING N N 9 A1ALX C16 C15 SING N N 10 A1ALX C17 C15 SING N N 11 A1ALX C14 C13 SING N N 12 A1ALX C18 C13 SING N N 13 A1ALX C20 N19 SING N N 14 A1ALX C22 C21 SING N N 15 A1ALX C23 C22 SING N N 16 A1ALX C25 N24 SING N N 17 A1ALX C26 C25 SING N N 18 A1ALX N24 C23 SING N N 19 A1ALX O27 C23 DOUB N N 20 A1ALX C21 C20 SING N N 21 A1ALX C28 C20 SING N N 22 A1ALX N29 C28 DOUB N N 23 A1ALX N19 C18 SING N N 24 A1ALX O30 C18 DOUB N N 25 A1ALX N12 C11 SING N N 26 A1ALX O31 C11 DOUB N N 27 A1ALX C11 C10 SING N N 28 A1ALX C32 C10 SING Y N 29 A1ALX C33 C32 DOUB Y N 30 A1ALX C10 C09 DOUB Y N 31 A1ALX CL34 C09 SING N N 32 A1ALX C07 C06 SING N N 33 A1ALX C35 C06 SING Y N 34 A1ALX C36 C35 DOUB Y N 35 A1ALX C03 C36 SING Y N 36 A1ALX C07 C33 SING Y N 37 A1ALX C22 C26 SING N N 38 A1ALX N12 H121 SING N N 39 A1ALX C13 H131 SING N N 40 A1ALX C15 H151 SING N N 41 A1ALX C17 H172 SING N N 42 A1ALX C17 H171 SING N N 43 A1ALX C17 H173 SING N N 44 A1ALX C20 H201 SING N N 45 A1ALX C21 H212 SING N N 46 A1ALX C21 H211 SING N N 47 A1ALX C22 H221 SING N N 48 A1ALX C26 H261 SING N N 49 A1ALX C26 H262 SING N N 50 A1ALX C28 H281 SING N N 51 A1ALX C01 H013 SING N N 52 A1ALX C01 H011 SING N N 53 A1ALX C01 H012 SING N N 54 A1ALX C04 H041 SING N N 55 A1ALX C05 H051 SING N N 56 A1ALX C08 H081 SING N N 57 A1ALX C14 H141 SING N N 58 A1ALX C14 H142 SING N N 59 A1ALX C16 H162 SING N N 60 A1ALX C16 H163 SING N N 61 A1ALX C16 H161 SING N N 62 A1ALX C25 H251 SING N N 63 A1ALX C25 H252 SING N N 64 A1ALX C32 H321 SING N N 65 A1ALX C33 H331 SING N N 66 A1ALX C35 H351 SING N N 67 A1ALX C36 H361 SING N N 68 A1ALX N19 H191 SING N N 69 A1ALX N24 H241 SING N N 70 A1ALX N29 H291 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ALX SMILES ACDLabs 12.01 "COc1ccc(cc1)c1ccc(c(Cl)c1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=N" A1ALX InChI InChI 1.06 "InChI=1S/C27H33ClN4O4/c1-16(2)12-24(27(35)31-20(15-29)13-19-10-11-30-25(19)33)32-26(34)22-9-6-18(14-23(22)28)17-4-7-21(36-3)8-5-17/h4-9,14-16,19-20,24,29H,10-13H2,1-3H3,(H,30,33)(H,31,35)(H,32,34)/b29-15+/t19-,20+,24-/m1/s1" A1ALX InChIKey InChI 1.06 IAKAOWBZTOTWKP-WPLACLJPSA-N A1ALX SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)c2ccc(c(Cl)c2)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N" A1ALX SMILES CACTVS 3.385 "COc1ccc(cc1)c2ccc(c(Cl)c2)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=N" A1ALX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)c2ccc(cc2Cl)c3ccc(cc3)OC" A1ALX SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2Cl)c3ccc(cc3)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ALX "SYSTEMATIC NAME" ACDLabs 12.01 "3-chloro-N-[(2R)-1-({(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4'-methoxy[1,1'-biphenyl]-4-carboxamide" A1ALX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-2-chloranyl-4-(4-methoxyphenyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ALX "Create component" 2024-04-10 RCSB A1ALX "Modify PCM" 2024-09-27 PDBE A1ALX "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ALX _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C28 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #