data_A1AMC # _chem_comp.id A1AMC _chem_comp.name "(2S)-2-(methylamino)pentane-1,1,5-triol" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-11 _chem_comp.pdbx_modified_date 2025-12-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BBJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMC C1 C1 C 0 1 N N N N N N -8.860 -13.316 -6.306 -1.553 2.386 -0.423 C1 A1AMC 1 A1AMC N N1 N 0 1 N N N Y Y N -9.211 -13.980 -5.052 -0.795 1.421 0.386 N A1AMC 2 A1AMC CA C2 C 0 1 N N S N Y N -8.136 -14.649 -4.200 -0.699 0.124 -0.296 CA A1AMC 3 A1AMC C C3 C 0 1 N N N N Y Y -8.410 -16.162 -4.063 -1.931 -0.693 0.001 C A1AMC 4 A1AMC O O1 O 0 1 N N N N Y Y -9.488 -16.449 -4.922 -2.799 -0.240 0.708 O A1AMC 5 A1AMC CB C4 C 0 1 N N N N N N -8.051 -13.921 -2.993 0.540 -0.623 0.201 CB A1AMC 6 A1AMC CG C5 C 0 1 N N N N N N -7.440 -14.680 -1.934 1.798 0.145 -0.210 CG A1AMC 7 A1AMC CD C6 C 0 1 N N N N N N -8.171 -16.010 -1.622 3.037 -0.602 0.287 CD A1AMC 8 A1AMC OXT O2 O 0 1 N Y N N Y Y -8.793 -16.595 -2.762 -2.062 -1.923 -0.521 OXT A1AMC 9 A1AMC H1 H1 H 0 1 N N N N N N -9.768 -12.900 -6.768 -1.052 2.530 -1.380 H1 A1AMC 10 A1AMC H4 H2 H 0 1 N N N N N N -8.146 -12.504 -6.103 -2.560 2.005 -0.594 H4 A1AMC 11 A1AMC H3 H3 H 0 1 N N N N N N -8.402 -14.045 -6.991 -1.609 3.338 0.105 H3 A1AMC 12 A1AMC H H4 H 0 1 N N N Y Y N -9.645 -13.289 -4.474 0.120 1.779 0.612 H A1AMC 13 A1AMC HA H6 H 0 1 N N N N Y N -7.183 -14.544 -4.740 -0.620 0.283 -1.372 HA A1AMC 14 A1AMC HB1 H8 H 0 1 N N N N N N -7.452 -13.015 -3.169 0.503 -0.705 1.288 HB1 A1AMC 15 A1AMC HB2 H9 H 0 1 N N N N N N -9.066 -13.635 -2.681 0.563 -1.621 -0.237 HB2 A1AMC 16 A1AMC H10 H10 H 0 1 N N N N N N -6.405 -14.912 -2.225 1.834 0.226 -1.297 H10 A1AMC 17 A1AMC H11 H11 H 0 1 N N N N N N -7.435 -14.064 -1.023 1.774 1.142 0.228 H11 A1AMC 18 A1AMC H12 H12 H 0 1 N N N N N N -9.260 -16.157 -1.679 3.000 -0.684 1.374 H12 A1AMC 19 A1AMC H13 H13 H 0 1 N N N N N N -7.676 -16.984 -1.494 3.060 -1.600 -0.151 H13 A1AMC 20 A1AMC HXT H15 H 0 1 N N N N Y Y -9.668 -16.965 -2.795 -2.870 -2.408 -0.302 HXT A1AMC 21 A1AMC OE OE O 0 1 N Y N N N N ? ? ? 4.212 0.115 -0.097 OE A1AMC 22 A1AMC H5 H5 H 0 1 N N N N N N ? ? ? 5.037 -0.302 0.186 H5 A1AMC 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMC C1 N SING N N 1 A1AMC N CA SING N N 2 A1AMC O C DOUB N N 3 A1AMC CA C SING N N 4 A1AMC CA CB SING N N 5 A1AMC CB CG SING N N 6 A1AMC CG CD SING N N 7 A1AMC C OXT SING N N 8 A1AMC C1 H1 SING N N 9 A1AMC C1 H4 SING N N 10 A1AMC C1 H3 SING N N 11 A1AMC N H SING N N 12 A1AMC CA HA SING N N 13 A1AMC CB HB1 SING N N 14 A1AMC CB HB2 SING N N 15 A1AMC CG H10 SING N N 16 A1AMC CG H11 SING N N 17 A1AMC CD H12 SING N N 18 A1AMC CD H13 SING N N 19 A1AMC OXT HXT SING N N 20 A1AMC CD OE SING N N 21 A1AMC OE H5 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMC SMILES ACDLabs 12.01 "OC(=O)C(NC)CCCO" A1AMC InChI InChI 1.06 "InChI=1S/C6H13NO3/c1-7-5(6(9)10)3-2-4-8/h5,7-8H,2-4H2,1H3,(H,9,10)/t5-/m0/s1" A1AMC InChIKey InChI 1.06 CJTSVYBCJVYBFR-YFKPBYRVSA-N A1AMC SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](CCCO)C(O)=O" A1AMC SMILES CACTVS 3.385 "CN[CH](CCCO)C(O)=O" A1AMC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@@H](CCCO)C(=O)O" A1AMC SMILES "OpenEye OEToolkits" 2.0.7 "CNC(CCCO)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMC "SYSTEMATIC NAME" ACDLabs 12.01 5-hydroxy-N-methyl-L-norvaline A1AMC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-(methylamino)-5-oxidanyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMC "Create component" 2024-04-11 RCSB A1AMC "Modify PCM" 2024-09-27 PDBE A1AMC "Initial release" 2025-12-10 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AMC _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #