data_A1AMD # _chem_comp.id A1AMD _chem_comp.name "(4M)-4-(4-{[(1R)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-11 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H0B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMD N1 N1 N 0 1 Y N N N N N 8.950 -6.916 18.532 0.062 -2.891 0.784 N1 A1AMD 1 A1AMD N3 N2 N 0 1 Y N N N N N 5.134 -7.988 19.388 -3.543 -1.037 0.986 N3 A1AMD 2 A1AMD C4 C1 C 0 1 Y N N N N N 8.474 -8.129 18.175 -0.114 -1.673 0.280 C4 A1AMD 3 A1AMD C5 C2 C 0 1 Y N N N N N 8.111 -6.082 19.156 -0.933 -3.537 1.367 C5 A1AMD 4 A1AMD C6 C3 C 0 1 Y N N N N N 6.377 -7.480 19.116 -2.416 -1.814 1.013 C6 A1AMD 5 A1AMD C7 C4 C 0 1 Y N N N N N 5.069 -9.286 18.911 -3.272 0.162 0.361 C7 A1AMD 6 A1AMD C8 C5 C 0 1 Y N N N N N 3.913 -10.144 19.158 -4.246 1.251 0.148 C8 A1AMD 7 A1AMD C10 C6 C 0 1 N N N N N N 1.794 -13.104 18.907 -7.494 2.699 -0.651 C10 A1AMD 8 A1AMD C13 C7 C 0 1 Y N N N N N 6.268 -9.608 18.313 -1.970 0.185 -0.027 C13 A1AMD 9 A1AMD C15 C8 C 0 1 Y N N N N N 10.819 -8.612 15.655 3.303 -0.659 0.041 C15 A1AMD 10 A1AMD C17 C9 C 0 1 Y N N N N N 11.320 -7.366 13.679 4.995 -0.038 1.607 C17 A1AMD 11 A1AMD C20 C10 C 0 1 N N N N N N 10.215 -10.753 11.540 5.316 3.533 -0.416 C20 A1AMD 12 A1AMD C21 C11 C 0 1 N N N N N N 10.291 -9.377 10.837 6.563 2.971 0.281 C21 A1AMD 13 A1AMD N6 N3 N 0 1 N N N N N N 5.087 -12.876 17.030 -6.827 -1.104 -0.631 N6 A1AMD 14 A1AMD C12 C12 C 0 1 N N N N N N 4.477 -12.256 17.778 -6.278 -0.126 -0.446 C12 A1AMD 15 A1AMD C11 C13 C 0 1 Y N N N N N 3.709 -11.449 18.671 -5.586 1.105 -0.212 C11 A1AMD 16 A1AMD N5 N4 N 0 1 Y N N N N N 2.494 -11.847 19.139 -6.111 2.365 -0.300 N5 A1AMD 17 A1AMD N4 N5 N 0 1 Y N N N N N 1.900 -10.881 19.905 -5.097 3.280 0.006 N4 A1AMD 18 A1AMD C9 C14 C 0 1 Y N N N N N 2.754 -9.866 19.911 -3.997 2.630 0.276 C9 A1AMD 19 A1AMD C14 C15 C 0 1 Y N N N N N 7.118 -8.463 18.444 -1.387 -1.087 0.382 C14 A1AMD 20 A1AMD N2 N6 N 0 1 Y N N N N N 6.824 -6.277 19.489 -2.140 -3.028 1.485 N2 A1AMD 21 A1AMD N N7 N 0 1 N N N N N N 9.304 -9.008 17.554 0.929 -1.001 -0.329 N A1AMD 22 A1AMD C3 C16 C 0 1 N N S N N N 10.684 -8.732 17.161 2.249 -1.629 -0.425 C3 A1AMD 23 A1AMD C1 C17 C 0 1 N N N N N N 11.636 -9.812 17.739 2.523 -2.021 -1.879 C1 A1AMD 24 A1AMD C2 C18 C 0 1 N N N N N N 13.073 -9.613 17.250 3.866 -2.749 -1.967 C2 A1AMD 25 A1AMD C C19 C 0 1 N N N N N N 11.597 -9.818 19.267 1.409 -2.944 -2.377 C A1AMD 26 A1AMD N7 N8 N 0 1 Y N N N N N 10.358 -9.651 14.944 3.521 0.445 -0.649 N7 A1AMD 27 A1AMD C19 C20 C 0 1 Y N N N N N 10.378 -9.554 13.624 4.435 1.329 -0.282 C19 A1AMD 28 A1AMD O O1 O 0 1 N N N N N N 9.932 -10.658 12.957 4.619 2.447 -1.035 O A1AMD 29 A1AMD O1 O2 O 0 1 N N N N N N 11.001 -8.363 11.570 6.141 2.013 1.255 O1 A1AMD 30 A1AMD C18 C21 C 0 1 Y N N N N N 10.865 -8.440 12.935 5.199 1.114 0.861 C18 A1AMD 31 A1AMD C16 C22 C 0 1 Y N N N N N 11.307 -7.461 15.061 4.023 -0.934 1.186 C16 A1AMD 32 A1AMD H1 H1 H 0 1 N N N N N N 4.395 -7.501 19.854 -4.404 -1.292 1.353 H1 A1AMD 33 A1AMD H10 H2 H 0 1 N N N N N N 8.524 -5.122 19.429 -0.747 -4.525 1.762 H10 A1AMD 34 A1AMD H13 H3 H 0 1 N N N N N N 0.822 -13.083 19.421 -8.099 2.741 0.254 H13 A1AMD 35 A1AMD H14 H4 H 0 1 N N N N N N 1.634 -13.241 17.827 -7.518 3.668 -1.150 H14 A1AMD 36 A1AMD H12 H5 H 0 1 N N N N N N 2.397 -13.937 19.297 -7.892 1.936 -1.320 H12 A1AMD 37 A1AMD H15 H6 H 0 1 N N N N N N 6.519 -10.544 17.837 -1.465 0.990 -0.541 H15 A1AMD 38 A1AMD H17 H7 H 0 1 N N N N N N 11.678 -6.471 13.192 5.576 -0.230 2.497 H17 A1AMD 39 A1AMD H18 H8 H 0 1 N N N N N N 11.180 -11.265 11.410 4.670 4.013 0.319 H18 A1AMD 40 A1AMD H19 H9 H 0 1 N N N N N N 9.419 -11.345 11.064 5.613 4.258 -1.173 H19 A1AMD 41 A1AMD H20 H10 H 0 1 N N N N N N 10.794 -9.515 9.869 7.207 2.486 -0.453 H20 A1AMD 42 A1AMD H21 H11 H 0 1 N N N N N N 9.264 -9.022 10.669 7.107 3.780 0.769 H21 A1AMD 43 A1AMD H11 H12 H 0 1 N N N N N N 2.582 -8.936 20.432 -3.052 3.076 0.550 H11 A1AMD 44 A1AMD H9 H13 H 0 1 N N N N N N 8.834 -9.266 16.710 0.788 -0.112 -0.692 H9 A1AMD 45 A1AMD H H14 H 0 1 N N N N N N 10.982 -7.768 17.599 2.273 -2.521 0.202 H A1AMD 46 A1AMD H5 H15 H 0 1 N N N N N N 11.287 -10.793 17.384 2.555 -1.123 -2.497 H5 A1AMD 47 A1AMD H7 H16 H 0 1 N N N N N N 13.090 -9.610 16.150 3.860 -3.603 -1.291 H7 A1AMD 48 A1AMD H6 H17 H 0 1 N N N N N N 13.458 -8.653 17.625 4.025 -3.094 -2.988 H6 A1AMD 49 A1AMD H8 H18 H 0 1 N N N N N N 13.704 -10.433 17.624 4.668 -2.067 -1.684 H8 A1AMD 50 A1AMD H3 H19 H 0 1 N N N N N N 10.561 -9.961 19.607 0.452 -2.425 -2.314 H3 A1AMD 51 A1AMD H4 H20 H 0 1 N N N N N N 12.224 -10.638 19.646 1.604 -3.222 -3.412 H4 A1AMD 52 A1AMD H2 H21 H 0 1 N N N N N N 11.978 -8.859 19.647 1.377 -3.841 -1.759 H2 A1AMD 53 A1AMD H16 H22 H 0 1 N N N N N N 11.673 -6.646 15.668 3.834 -1.839 1.745 H16 A1AMD 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMD C C1 SING N N 1 A1AMD C2 C1 SING N N 2 A1AMD C1 C3 SING N N 3 A1AMD C3 N SING N N 4 A1AMD N C4 SING N N 5 A1AMD C4 N1 DOUB Y N 6 A1AMD N1 C5 SING Y N 7 A1AMD C5 N2 DOUB Y N 8 A1AMD N2 C6 SING Y N 9 A1AMD C6 N3 SING Y N 10 A1AMD N3 C7 SING Y N 11 A1AMD C7 C8 SING N N 12 A1AMD C8 C9 SING Y N 13 A1AMD C9 N4 DOUB Y N 14 A1AMD N4 N5 SING Y N 15 A1AMD C10 N5 SING N N 16 A1AMD N5 C11 SING Y N 17 A1AMD C8 C11 DOUB Y N 18 A1AMD C11 C12 SING N N 19 A1AMD C12 N6 TRIP N N 20 A1AMD C13 C7 DOUB Y N 21 A1AMD C14 C13 SING Y N 22 A1AMD C4 C14 SING Y N 23 A1AMD C6 C14 DOUB Y N 24 A1AMD C15 C3 SING N N 25 A1AMD C15 C16 DOUB Y N 26 A1AMD C16 C17 SING Y N 27 A1AMD C17 C18 DOUB Y N 28 A1AMD C18 C19 SING Y N 29 A1AMD C19 N7 DOUB Y N 30 A1AMD N7 C15 SING Y N 31 A1AMD O C19 SING N N 32 A1AMD C20 O SING N N 33 A1AMD C21 C20 SING N N 34 A1AMD O1 C21 SING N N 35 A1AMD C18 O1 SING N N 36 A1AMD N3 H1 SING N N 37 A1AMD C5 H10 SING N N 38 A1AMD C10 H13 SING N N 39 A1AMD C10 H14 SING N N 40 A1AMD C10 H12 SING N N 41 A1AMD C13 H15 SING N N 42 A1AMD C17 H17 SING N N 43 A1AMD C20 H18 SING N N 44 A1AMD C20 H19 SING N N 45 A1AMD C21 H20 SING N N 46 A1AMD C21 H21 SING N N 47 A1AMD C9 H11 SING N N 48 A1AMD N H9 SING N N 49 A1AMD C3 H SING N N 50 A1AMD C1 H5 SING N N 51 A1AMD C2 H7 SING N N 52 A1AMD C2 H6 SING N N 53 A1AMD C2 H8 SING N N 54 A1AMD C H3 SING N N 55 A1AMD C H4 SING N N 56 A1AMD C H2 SING N N 57 A1AMD C16 H16 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMD SMILES ACDLabs 12.01 "N#Cc1n(C)ncc1c1cc2c([NH]1)ncnc2NC(c1ccc2OCCOc2n1)C(C)C" A1AMD InChI InChI 1.06 "InChI=1S/C22H22N8O2/c1-12(2)19(15-4-5-18-22(28-15)32-7-6-31-18)29-21-13-8-16(27-20(13)24-11-25-21)14-10-26-30(3)17(14)9-23/h4-5,8,10-12,19H,6-7H2,1-3H3,(H2,24,25,27,29)/t19-/m0/s1" A1AMD InChIKey InChI 1.06 TVKAXNHJIVHZSG-IBGZPJMESA-N A1AMD SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2[nH]c(cc12)c3cnn(C)c3C#N)c4ccc5OCCOc5n4" A1AMD SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2[nH]c(cc12)c3cnn(C)c3C#N)c4ccc5OCCOc5n4" A1AMD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(n1)OCCO2)Nc3c4cc([nH]c4ncn3)c5cnn(c5C#N)C" A1AMD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(n1)OCCO2)Nc3c4cc([nH]c4ncn3)c5cnn(c5C#N)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMD "SYSTEMATIC NAME" ACDLabs 12.01 "(4M)-4-(4-{[(1R)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile" A1AMD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[4-[[(1~{S})-1-(2,3-dihydro-[1,4]dioxino[2,3-b]pyridin-6-yl)-2-methyl-propyl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-6-yl]-2-methyl-pyrazole-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMD "Create component" 2024-04-11 RCSB A1AMD "Initial release" 2024-05-15 RCSB #