data_A1AMG # _chem_comp.id A1AMG _chem_comp.name "N-cyclopropyl-4-{[(1R)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-11 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 453.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H0F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMG N1 N1 N 0 1 Y N N N N N 8.805 -7.085 19.083 -2.033 -2.980 0.116 N1 A1AMG 1 A1AMG N3 N2 N 0 1 Y N N N N N 4.875 -7.874 19.637 -5.425 -1.150 1.385 N3 A1AMG 2 A1AMG C4 C1 C 0 1 Y N N N N N 8.297 -8.291 18.750 -2.147 -1.654 0.110 C4 A1AMG 3 A1AMG C5 C2 C 0 1 Y N N N N N 7.978 -6.189 19.622 -3.023 -3.745 0.537 C5 A1AMG 4 A1AMG C6 C3 C 0 1 Y N N N N N 6.181 -7.490 19.500 -4.373 -1.939 1.000 C6 A1AMG 5 A1AMG C7 C4 C 0 1 Y N N N N N 4.743 -9.157 19.165 -5.123 0.163 1.215 C7 A1AMG 6 A1AMG C8 C5 C 0 1 Y N N N N N 5.964 -9.632 18.732 -3.861 0.282 0.712 C8 A1AMG 7 A1AMG C10 C6 C 0 1 N N N N N N 5.379 -13.269 17.921 -3.135 3.819 -0.447 C10 A1AMG 8 A1AMG C13 C7 C 0 1 Y N N N N N 6.911 -8.550 18.935 -3.346 -1.088 0.562 C13 A1AMG 9 A1AMG C15 C8 C 0 1 Y N N N N N 11.359 -7.729 15.872 1.063 0.875 -0.927 C15 A1AMG 10 A1AMG C17 C9 C 0 1 Y N N N N N 11.038 -8.482 13.587 3.316 1.435 -0.273 C17 A1AMG 11 A1AMG C20 C10 C 0 1 N N N N N N 10.416 -10.530 11.533 6.185 0.963 0.454 C20 A1AMG 12 A1AMG C21 C11 C 0 1 N N N N N N 10.313 -9.041 11.229 5.440 2.252 0.833 C21 A1AMG 13 A1AMG C22 C12 C 0 1 N N N N N N 11.264 -8.251 12.112 4.352 2.517 -0.193 C22 A1AMG 14 A1AMG O2 O1 O 0 1 N N N N N N 8.324 -10.690 13.075 5.402 -1.551 -0.006 O2 A1AMG 15 A1AMG S S1 S 0 1 N N N N N N 9.760 -10.877 13.126 5.053 -0.421 0.783 S A1AMG 16 A1AMG O1 O2 O 0 1 N N N N N N 10.246 -12.154 13.586 4.806 -0.546 2.176 O1 A1AMG 17 A1AMG C16 C13 C 0 1 Y N N N N N 11.483 -7.540 14.504 2.073 1.801 -0.788 C16 A1AMG 18 A1AMG C18 C14 C 0 1 Y N N N N N 10.426 -9.631 14.115 3.517 0.128 0.108 C18 A1AMG 19 A1AMG C19 C15 C 0 1 Y N N N N N 10.304 -9.829 15.488 2.497 -0.803 -0.026 C19 A1AMG 20 A1AMG C14 C16 C 0 1 Y N N N N N 10.771 -8.872 16.385 1.273 -0.437 -0.547 C14 A1AMG 21 A1AMG C3 C17 C 0 1 N N S N N N 10.545 -9.040 17.883 0.175 -1.458 -0.699 C3 A1AMG 22 A1AMG C1 C18 C 0 1 N N N N N N 11.429 -10.157 18.502 0.118 -1.932 -2.153 C1 A1AMG 23 A1AMG C2 C19 C 0 1 N N N N N N 11.308 -10.192 20.047 1.458 -2.562 -2.537 C2 A1AMG 24 A1AMG C C20 C 0 1 N N N N N N 12.887 -10.000 18.108 -0.997 -2.968 -2.307 C A1AMG 25 A1AMG N N3 N 0 1 N N N N N N 9.136 -9.238 18.224 -1.108 -0.854 -0.331 N A1AMG 26 A1AMG N2 N4 N 0 1 Y N N N N N 6.676 -6.304 19.872 -4.165 -3.255 0.969 N2 A1AMG 27 A1AMG C9 C21 C 0 1 N N N N N N 6.243 -10.978 18.195 -3.156 1.529 0.385 C9 A1AMG 28 A1AMG O O3 O 0 1 N N N N N N 7.294 -11.227 17.598 -1.957 1.617 0.572 O A1AMG 29 A1AMG N4 N5 N 0 1 N N N N N N 5.281 -11.897 18.413 -3.838 2.576 -0.122 N4 A1AMG 30 A1AMG C12 C22 C 0 1 N N N N N N 4.700 -14.331 18.699 -3.800 5.135 -0.038 C12 A1AMG 31 A1AMG C11 C23 C 0 1 N N N N N N 6.183 -14.248 18.691 -3.758 4.725 -1.512 C11 A1AMG 32 A1AMG H1 H1 H 0 1 N N N N N N 4.139 -7.314 20.017 -6.268 -1.482 1.731 H1 A1AMG 33 A1AMG H10 H2 H 0 1 N N N N N N 8.424 -5.243 19.892 -2.891 -4.817 0.526 H10 A1AMG 34 A1AMG H11 H3 H 0 1 N N N N N N 3.818 -9.713 19.137 -5.782 0.988 1.443 H11 A1AMG 35 A1AMG H13 H4 H 0 1 N N N N N N 5.380 -13.398 16.829 -2.047 3.770 -0.403 H13 A1AMG 36 A1AMG H18 H5 H 0 1 N N N N N N 11.727 -6.972 16.548 0.106 1.175 -1.327 H18 A1AMG 37 A1AMG H21 H6 H 0 1 N N N N N N 11.473 -10.834 11.502 6.450 0.984 -0.603 H21 A1AMG 38 A1AMG H22 H7 H 0 1 N N N N N N 9.850 -11.094 10.777 7.085 0.860 1.060 H22 A1AMG 39 A1AMG H23 H8 H 0 1 N N N N N N 10.571 -8.868 10.174 4.990 2.136 1.819 H23 A1AMG 40 A1AMG H24 H9 H 0 1 N N N N N N 9.282 -8.704 11.415 6.140 3.087 0.847 H24 A1AMG 41 A1AMG H25 H10 H 0 1 N N N N N N 12.295 -8.545 11.866 4.818 2.625 -1.173 H25 A1AMG 42 A1AMG H26 H11 H 0 1 N N N N N N 11.128 -7.180 11.901 3.857 3.454 0.058 H26 A1AMG 43 A1AMG H19 H12 H 0 1 N N N N N N 11.940 -6.631 14.141 1.900 2.825 -1.083 H19 A1AMG 44 A1AMG H20 H13 H 0 1 N N N N N N 9.843 -10.732 15.860 2.668 -1.828 0.269 H20 A1AMG 45 A1AMG H H14 H 0 1 N N N N N N 10.865 -8.099 18.355 0.377 -2.309 -0.047 H A1AMG 46 A1AMG H5 H15 H 0 1 N N N N N N 11.071 -11.122 18.115 -0.084 -1.082 -2.804 H5 A1AMG 47 A1AMG H7 H16 H 0 1 N N N N N N 10.251 -10.306 20.330 1.659 -3.413 -1.886 H7 A1AMG 48 A1AMG H8 H17 H 0 1 N N N N N N 11.886 -11.041 20.441 1.416 -2.900 -3.573 H8 A1AMG 49 A1AMG H6 H18 H 0 1 N N N N N N 11.701 -9.254 20.467 2.252 -1.824 -2.427 H6 A1AMG 50 A1AMG H3 H19 H 0 1 N N N N N N 12.970 -9.975 17.011 -1.952 -2.519 -2.033 H3 A1AMG 51 A1AMG H2 H20 H 0 1 N N N N N N 13.281 -9.062 18.527 -1.038 -3.306 -3.343 H2 A1AMG 52 A1AMG H4 H21 H 0 1 N N N N N N 13.466 -10.849 18.501 -0.795 -3.819 -1.656 H4 A1AMG 53 A1AMG H9 H22 H 0 1 N N N N N N 8.699 -9.534 17.374 -1.228 0.106 -0.396 H9 A1AMG 54 A1AMG H12 H23 H 0 1 N N N N N N 4.469 -11.629 18.932 -4.793 2.505 -0.270 H12 A1AMG 55 A1AMG H17 H24 H 0 1 N N N N N N 4.192 -15.156 18.177 -4.760 5.075 0.474 H17 A1AMG 56 A1AMG H16 H25 H 0 1 N N N N N N 4.139 -14.073 19.610 -3.149 5.951 0.276 H16 A1AMG 57 A1AMG H15 H26 H 0 1 N N N N N N 6.774 -15.011 18.163 -3.080 5.271 -2.167 H15 A1AMG 58 A1AMG H14 H27 H 0 1 N N N N N N 6.721 -13.928 19.595 -4.691 4.395 -1.969 H14 A1AMG 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMG C C1 SING N N 1 A1AMG C2 C1 SING N N 2 A1AMG C1 C3 SING N N 3 A1AMG N C3 SING N N 4 A1AMG C4 N SING N N 5 A1AMG C4 N1 DOUB Y N 6 A1AMG N1 C5 SING Y N 7 A1AMG C5 N2 DOUB Y N 8 A1AMG N2 C6 SING Y N 9 A1AMG C6 N3 SING Y N 10 A1AMG N3 C7 SING Y N 11 A1AMG C7 C8 DOUB Y N 12 A1AMG C9 C8 SING N N 13 A1AMG O C9 DOUB N N 14 A1AMG N4 C9 SING N N 15 A1AMG C10 N4 SING N N 16 A1AMG C10 C11 SING N N 17 A1AMG C11 C12 SING N N 18 A1AMG C12 C10 SING N N 19 A1AMG C8 C13 SING Y N 20 A1AMG C13 C4 SING Y N 21 A1AMG C6 C13 DOUB Y N 22 A1AMG C3 C14 SING N N 23 A1AMG C14 C15 DOUB Y N 24 A1AMG C15 C16 SING Y N 25 A1AMG C16 C17 DOUB Y N 26 A1AMG C17 C18 SING Y N 27 A1AMG C19 C18 DOUB Y N 28 A1AMG C14 C19 SING Y N 29 A1AMG C18 S SING N N 30 A1AMG O1 S DOUB N N 31 A1AMG S O2 DOUB N N 32 A1AMG C20 S SING N N 33 A1AMG C21 C20 SING N N 34 A1AMG C22 C21 SING N N 35 A1AMG C17 C22 SING N N 36 A1AMG N3 H1 SING N N 37 A1AMG C5 H10 SING N N 38 A1AMG C7 H11 SING N N 39 A1AMG C10 H13 SING N N 40 A1AMG C15 H18 SING N N 41 A1AMG C20 H21 SING N N 42 A1AMG C20 H22 SING N N 43 A1AMG C21 H23 SING N N 44 A1AMG C21 H24 SING N N 45 A1AMG C22 H25 SING N N 46 A1AMG C22 H26 SING N N 47 A1AMG C16 H19 SING N N 48 A1AMG C19 H20 SING N N 49 A1AMG C3 H SING N N 50 A1AMG C1 H5 SING N N 51 A1AMG C2 H7 SING N N 52 A1AMG C2 H8 SING N N 53 A1AMG C2 H6 SING N N 54 A1AMG C H3 SING N N 55 A1AMG C H2 SING N N 56 A1AMG C H4 SING N N 57 A1AMG N H9 SING N N 58 A1AMG N4 H12 SING N N 59 A1AMG C12 H17 SING N N 60 A1AMG C12 H16 SING N N 61 A1AMG C11 H15 SING N N 62 A1AMG C11 H14 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMG SMILES ACDLabs 12.01 "CC(C)C(Nc1ncnc2[NH]cc(C(=O)NC3CC3)c21)c1ccc2CCCS(=O)(=O)c2c1" A1AMG InChI InChI 1.06 "InChI=1S/C23H27N5O3S/c1-13(2)20(15-6-5-14-4-3-9-32(30,31)18(14)10-15)28-22-19-17(23(29)27-16-7-8-16)11-24-21(19)25-12-26-22/h5-6,10-13,16,20H,3-4,7-9H2,1-2H3,(H,27,29)(H2,24,25,26,28)/t20-/m0/s1" A1AMG InChIKey InChI 1.06 FGTMEWMCYMGHFR-FQEVSTJZSA-N A1AMG SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2[nH]cc(C(=O)NC3CC3)c12)c4ccc5CCC[S](=O)(=O)c5c4" A1AMG SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2[nH]cc(C(=O)NC3CC3)c12)c4ccc5CCC[S](=O)(=O)c5c4" A1AMG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(c[nH]c4ncn3)C(=O)NC5CC5" A1AMG SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(c[nH]c4ncn3)C(=O)NC5CC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMG "SYSTEMATIC NAME" ACDLabs 12.01 "N-cyclopropyl-4-{[(1R)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide" A1AMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]amino]-~{N}-cyclopropyl-7~{H}-pyrrolo[2,3-d]pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMG "Create component" 2024-04-11 RCSB A1AMG "Initial release" 2024-05-15 RCSB #