data_A1AMI # _chem_comp.id A1AMI _chem_comp.name "(4S)-6-{(1S)-1-[(6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]-2-methylpropyl}-2,3-dihydro-4H-1,4lambda~4~-benzoxathiin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-11 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.458 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMI C10 C1 C 0 1 Y N N N N N 5.550 3.227 46.686 -5.087 0.380 0.713 C10 A1AMI 1 A1AMI C13 C2 C 0 1 N N N N N N 5.568 2.263 48.738 -3.977 2.158 -0.357 C13 A1AMI 2 A1AMI C15 C3 C 0 1 Y N N N N N 1.136 4.590 49.833 0.817 -0.091 -0.443 C15 A1AMI 3 A1AMI C17 C4 C 0 1 Y N N N N N 0.418 6.797 50.420 2.175 1.682 -1.299 C17 A1AMI 4 A1AMI C20 C5 C 0 1 Y N N N N N 1.747 4.458 51.095 1.884 -0.536 0.314 C20 A1AMI 5 A1AMI C24 C6 C 0 1 N N N N N N 1.005 7.489 54.074 5.415 1.881 0.353 C24 A1AMI 6 A1AMI C01 C7 C 0 1 N N N N N N 0.353 1.112 48.193 0.508 -2.751 -1.603 C01 A1AMI 7 A1AMI C02 C8 C 0 1 N N N N N N 0.157 2.316 49.124 -0.633 -1.731 -1.607 C02 A1AMI 8 A1AMI C03 C9 C 0 1 N N N N N N -1.289 2.795 49.109 -1.974 -2.466 -1.553 C03 A1AMI 9 A1AMI C04 C10 C 0 1 N N S N N N 1.134 3.454 48.804 -0.503 -0.816 -0.389 C04 A1AMI 10 A1AMI N05 N1 N 0 1 N N N N N N 2.488 2.928 48.751 -1.596 0.161 -0.393 N05 A1AMI 11 A1AMI C06 C11 C 0 1 Y N N N N N 3.374 3.286 47.678 -2.825 -0.173 0.155 C06 A1AMI 12 A1AMI N07 N2 N 0 1 Y N N N N N 2.951 3.922 46.569 -3.026 -1.378 0.688 N07 A1AMI 13 A1AMI C08 C12 C 0 1 Y N N N N N 3.796 4.195 45.559 -4.194 -1.693 1.209 C08 A1AMI 14 A1AMI N09 N3 N 0 1 Y N N N N N 5.082 3.866 45.583 -5.204 -0.850 1.228 N09 A1AMI 15 A1AMI N11 N4 N 0 1 N N N N N N 6.809 2.798 46.967 -6.011 1.406 0.638 N11 A1AMI 16 A1AMI C12 C13 C 0 1 N N N N N N 6.840 2.218 48.172 -5.419 2.576 -0.018 C12 A1AMI 17 A1AMI C14 C14 C 0 1 Y N N N N N 4.749 2.927 47.756 -3.869 0.743 0.157 C14 A1AMI 18 A1AMI C16 C15 C 0 1 Y N N N N N 0.448 5.778 49.501 0.965 1.025 -1.245 C16 A1AMI 19 A1AMI C18 C16 C 0 1 Y N N N N N 1.043 6.652 51.632 3.261 1.233 -0.544 C18 A1AMI 20 A1AMI C19 C17 C 0 1 Y N N N N N 1.722 5.476 52.056 3.098 0.126 0.269 C19 A1AMI 21 A1AMI S21 S1 S 0 1 N N S N N N 2.566 5.367 53.538 4.424 -0.461 1.278 S21 A1AMI 22 A1AMI O22 O1 O 0 1 N N N N N N 3.927 5.740 53.196 4.503 -1.837 0.934 O22 A1AMI 23 A1AMI C23 C18 C 0 1 N N N N N N 2.258 6.702 54.452 5.850 0.423 0.576 C23 A1AMI 24 A1AMI O25 O2 O 0 1 N N N N N N 0.903 7.864 52.585 4.422 1.915 -0.660 O25 A1AMI 25 A1AMI H1 H1 H 0 1 N N N N N N 5.194 1.247 48.931 -3.815 2.189 -1.434 H1 A1AMI 26 A1AMI H131 H2 H 0 0 N N N N N N 5.583 2.833 49.679 -3.263 2.803 0.154 H131 A1AMI 27 A1AMI H171 H3 H 0 0 N N N N N N -0.100 7.716 50.188 2.285 2.551 -1.930 H171 A1AMI 28 A1AMI H201 H4 H 0 0 N N N N N N 2.255 3.535 51.331 1.770 -1.406 0.944 H201 A1AMI 29 A1AMI H242 H5 H 0 0 N N N N N N 0.127 6.880 54.334 5.006 2.285 1.279 H242 A1AMI 30 A1AMI H241 H6 H 0 0 N N N N N N 0.994 8.418 54.662 6.275 2.475 0.044 H241 A1AMI 31 A1AMI H013 H7 H 0 0 N N N N N N 1.404 0.790 48.225 0.416 -3.403 -2.471 H013 A1AMI 32 A1AMI H012 H8 H 0 0 N N N N N N -0.294 0.285 48.522 1.463 -2.227 -1.642 H012 A1AMI 33 A1AMI H011 H9 H 0 0 N N N N N N 0.089 1.397 47.164 0.458 -3.348 -0.693 H011 A1AMI 34 A1AMI H021 H10 H 0 0 N N N N N N 0.378 1.975 50.146 -0.583 -1.134 -2.518 H021 A1AMI 35 A1AMI H031 H11 H 0 0 N N N N N N -1.397 3.657 49.784 -2.024 -3.064 -0.642 H031 A1AMI 36 A1AMI H033 H12 H 0 0 N N N N N N -1.566 3.093 48.087 -2.787 -1.740 -1.556 H033 A1AMI 37 A1AMI H032 H13 H 0 0 N N N N N N -1.948 1.981 49.445 -2.066 -3.119 -2.421 H032 A1AMI 38 A1AMI H041 H14 H 0 0 N N N N N N 0.867 3.875 47.823 -0.553 -1.413 0.522 H041 A1AMI 39 A1AMI H051 H15 H 0 0 N N N N N N 2.407 1.931 48.733 -1.459 1.040 -0.779 H051 A1AMI 40 A1AMI H081 H16 H 0 0 N N N N N N 3.411 4.705 44.689 -4.327 -2.677 1.634 H081 A1AMI 41 A1AMI H111 H17 H 0 0 N N N N N N 7.095 2.136 46.274 -6.921 1.358 0.972 H111 A1AMI 42 A1AMI H2 H18 H 0 1 N N N N N N 7.159 1.170 48.067 -5.417 3.432 0.656 H2 A1AMI 43 A1AMI H121 H19 H 0 0 N N N N N N 7.549 2.754 48.820 -5.969 2.813 -0.929 H121 A1AMI 44 A1AMI H161 H20 H 0 0 N N N N N N -0.044 5.882 48.545 0.131 1.381 -1.832 H161 A1AMI 45 A1AMI H231 H21 H 0 0 N N N N N N 2.151 6.378 55.498 6.136 -0.028 -0.374 H231 A1AMI 46 A1AMI H232 H22 H 0 0 N N N N N N 3.121 7.378 54.364 6.688 0.388 1.272 H232 A1AMI 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMI C02 C01 SING N N 1 A1AMI C03 C02 SING N N 2 A1AMI C04 C02 SING N N 3 A1AMI C06 N05 SING N N 4 A1AMI N07 C06 DOUB Y N 5 A1AMI C08 N07 SING Y N 6 A1AMI N09 C08 DOUB Y N 7 A1AMI C10 N09 SING Y N 8 A1AMI N11 C10 SING N N 9 A1AMI C12 N11 SING N N 10 A1AMI C13 C12 SING N N 11 A1AMI C14 C13 SING N N 12 A1AMI N05 C04 SING N N 13 A1AMI C15 C04 SING N N 14 A1AMI C16 C15 DOUB Y N 15 A1AMI C17 C16 SING Y N 16 A1AMI C18 C17 DOUB Y N 17 A1AMI C19 C18 SING Y N 18 A1AMI C20 C19 DOUB Y N 19 A1AMI S21 C19 SING N N 20 A1AMI O22 S21 DOUB N N 21 A1AMI C23 S21 SING N N 22 A1AMI C24 C23 SING N N 23 A1AMI O25 C24 SING N N 24 A1AMI C06 C14 SING Y N 25 A1AMI C10 C14 DOUB Y N 26 A1AMI C15 C20 SING Y N 27 A1AMI C18 O25 SING N N 28 A1AMI C13 H1 SING N N 29 A1AMI C13 H131 SING N N 30 A1AMI C17 H171 SING N N 31 A1AMI C20 H201 SING N N 32 A1AMI C24 H242 SING N N 33 A1AMI C24 H241 SING N N 34 A1AMI C01 H013 SING N N 35 A1AMI C01 H012 SING N N 36 A1AMI C01 H011 SING N N 37 A1AMI C02 H021 SING N N 38 A1AMI C03 H031 SING N N 39 A1AMI C03 H033 SING N N 40 A1AMI C03 H032 SING N N 41 A1AMI C04 H041 SING N N 42 A1AMI N05 H051 SING N N 43 A1AMI C08 H081 SING N N 44 A1AMI N11 H111 SING N N 45 A1AMI C12 H2 SING N N 46 A1AMI C12 H121 SING N N 47 A1AMI C16 H161 SING N N 48 A1AMI C23 H231 SING N N 49 A1AMI C23 H232 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMI SMILES ACDLabs 12.01 "CC(C)C(Nc1ncnc2NCCc21)c1ccc2OCCS(=O)c2c1" A1AMI InChI InChI 1.06 "InChI=1S/C18H22N4O2S/c1-11(2)16(22-18-13-5-6-19-17(13)20-10-21-18)12-3-4-14-15(9-12)25(23)8-7-24-14/h3-4,9-11,16H,5-8H2,1-2H3,(H2,19,20,21,22)/t16?,25-/m0/s1" A1AMI InChIKey InChI 1.06 FJVNBBKEGGOLRS-JIKORUOASA-N A1AMI SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2NCCc12)c3ccc4OCC[S@](=O)c4c3" A1AMI SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2NCCc12)c3ccc4OCC[S](=O)c4c3" A1AMI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)[S@@](=O)CCO2)Nc3c4c(ncn3)NCC4" A1AMI SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)CCO2)Nc3c4c(ncn3)NCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMI "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-6-{(1S)-1-[(6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]-2-methylpropyl}-2,3-dihydro-4H-1,4lambda~4~-benzoxathiin-4-one" A1AMI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-2-methyl-1-[(4~{S})-4-oxidanylidene-2,3-dihydro-1,4$l^{4}-benzoxathiin-6-yl]propyl]-6,7-dihydro-5~{H}-pyrrolo[2,3-d]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMI "Create component" 2024-04-11 RCSB A1AMI "Initial release" 2024-05-15 RCSB #