data_A1AMK # _chem_comp.id A1AMK _chem_comp.name "4-{[(1R)-1-(4,4-dioxo-3,4-dihydro-2H-1,4lambda~6~-benzoxathiin-6-yl)-2-methylpropyl]amino}-N-ethyl-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-11 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 443.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H0I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMK N1 N1 N 0 1 N N N N N N 9.098 -9.177 13.588 0.492 -0.771 0.416 N1 A1AMK 1 A1AMK N3 N2 N 0 1 Y N N N N N 6.650 -8.309 16.841 3.637 -2.833 -1.216 N3 A1AMK 2 A1AMK C4 C1 C 0 1 Y N N N N N 6.083 -10.081 13.783 3.370 0.384 0.192 C4 A1AMK 3 A1AMK C5 C2 C 0 1 Y N N N N N 6.930 -9.301 14.627 2.837 -0.862 -0.197 C5 A1AMK 4 A1AMK C6 C3 C 0 1 Y N N N N N 8.280 -8.881 14.616 1.560 -1.453 -0.131 C6 A1AMK 5 A1AMK C7 C4 C 0 1 N N S N N N 10.452 -8.674 13.411 -0.828 -1.403 0.475 C7 A1AMK 6 A1AMK C8 C5 C 0 1 Y N N N N N 10.503 -7.563 12.377 -1.893 -0.338 0.521 C8 A1AMK 7 A1AMK C10 C6 C 0 1 Y N N N N N 10.975 -5.259 11.789 -2.681 1.773 1.328 C10 A1AMK 8 A1AMK C13 C7 C 0 1 Y N N N N N 9.997 -7.757 11.089 -3.067 -0.498 -0.192 C13 A1AMK 9 A1AMK C15 C8 C 0 1 N N N N N N 10.493 -4.510 8.265 -5.787 2.813 -0.267 C15 A1AMK 10 A1AMK C17 C9 C 0 1 N N N N N N 11.364 -10.927 14.218 -0.842 -1.383 2.973 C17 A1AMK 11 A1AMK C20 C10 C 0 1 Y N N N N N 6.190 -8.987 15.771 3.892 -1.606 -0.766 C20 A1AMK 12 A1AMK O2 O1 O 0 1 N N N N N N 10.069 -8.031 7.969 -5.133 0.564 -2.434 O2 A1AMK 13 A1AMK S S1 S 0 1 N N N N N N 9.296 -7.021 8.623 -5.518 0.255 -1.101 S A1AMK 14 A1AMK O1 O2 O 0 1 N N N N N N 7.900 -7.269 8.827 -5.978 -1.043 -0.749 O1 A1AMK 15 A1AMK C14 C11 C 0 1 N N N N N N 9.468 -5.473 7.815 -6.628 1.536 -0.437 C14 A1AMK 16 A1AMK O3 O3 O 0 1 N N N N N N 10.578 -4.356 9.687 -4.799 2.592 0.725 O3 A1AMK 17 A1AMK C11 C12 C 0 1 Y N N N N N 10.494 -5.459 10.504 -3.869 1.618 0.613 C11 A1AMK 18 A1AMK C9 C13 C 0 1 Y N N N N N 10.974 -6.291 12.716 -1.704 0.802 1.280 C9 A1AMK 19 A1AMK C12 C14 C 0 1 Y N N N N N 9.973 -6.722 10.157 -4.045 0.477 -0.151 C12 A1AMK 20 A1AMK C16 C15 C 0 1 N N N N N N 11.402 -9.862 13.095 -0.921 -2.272 1.730 C16 A1AMK 21 A1AMK C18 C16 C 0 1 N N N N N N 12.833 -9.397 12.862 -2.251 -3.029 1.729 C18 A1AMK 22 A1AMK N2 N3 N 0 1 Y N N N N N 8.754 -8.184 15.672 1.409 -2.685 -0.608 N2 A1AMK 23 A1AMK C19 C17 C 0 1 Y N N N N N 7.914 -7.926 16.677 2.427 -3.343 -1.132 C19 A1AMK 24 A1AMK N4 N4 N 0 1 Y N N N N N 4.924 -9.493 15.622 5.013 -0.828 -0.716 N4 A1AMK 25 A1AMK C3 C18 C 0 1 Y N N N N N 4.856 -10.153 14.402 4.692 0.385 -0.131 C3 A1AMK 26 A1AMK C2 C19 C 0 1 N N N N N N 3.617 -10.838 13.945 5.627 1.493 0.102 C2 A1AMK 27 A1AMK O O4 O 0 1 N N N N N N 3.581 -11.360 12.824 5.235 2.520 0.626 O A1AMK 28 A1AMK N N5 N 0 1 N N N N N N 2.570 -10.859 14.786 6.918 1.374 -0.264 N A1AMK 29 A1AMK C1 C20 C 0 1 N N N N N N 1.342 -11.634 14.520 7.850 2.480 -0.031 C1 A1AMK 30 A1AMK C C21 C 0 1 N N N N N N 1.536 -13.114 14.791 9.241 2.089 -0.535 C A1AMK 31 A1AMK H9 H1 H 0 1 N N N N N N 9.186 -10.173 13.599 0.617 0.126 0.764 H9 A1AMK 32 A1AMK H8 H2 H 0 1 N N N N N N 6.354 -10.529 12.838 2.828 1.191 0.663 H8 A1AMK 33 A1AMK H H3 H 0 1 N N N N N N 10.784 -8.245 14.368 -0.973 -2.024 -0.409 H A1AMK 34 A1AMK H11 H4 H 0 1 N N N N N N 11.355 -4.288 12.072 -2.524 2.662 1.920 H11 A1AMK 35 A1AMK H12 H5 H 0 1 N N N N N N 9.617 -8.729 10.811 -3.219 -1.389 -0.783 H12 A1AMK 36 A1AMK H15 H6 H 0 1 N N N N N N 11.472 -4.852 7.897 -5.301 3.057 -1.212 H15 A1AMK 37 A1AMK H16 H7 H 0 1 N N N N N N 10.259 -3.529 7.826 -6.432 3.638 0.035 H16 A1AMK 38 A1AMK H18 H8 H 0 1 N N N N N N 12.046 -11.752 13.964 -1.666 -0.670 2.963 H18 A1AMK 39 A1AMK H20 H9 H 0 1 N N N N N N 11.679 -10.470 15.168 -0.909 -2.003 3.868 H20 A1AMK 40 A1AMK H19 H10 H 0 1 N N N N N N 10.340 -11.315 14.320 0.105 -0.844 2.974 H19 A1AMK 41 A1AMK H13 H11 H 0 1 N N N N N N 9.680 -5.690 6.758 -7.025 1.221 0.529 H13 A1AMK 42 A1AMK H14 H12 H 0 1 N N N N N N 8.497 -4.963 7.897 -7.446 1.719 -1.134 H14 A1AMK 43 A1AMK H10 H13 H 0 1 N N N N N N 11.343 -6.109 13.715 -0.788 0.931 1.838 H10 A1AMK 44 A1AMK H17 H14 H 0 1 N N N N N N 11.044 -10.338 12.170 -0.097 -2.986 1.740 H17 A1AMK 45 A1AMK H22 H15 H 0 1 N N N N N N 13.470 -10.266 12.642 -3.075 -2.316 1.719 H22 A1AMK 46 A1AMK H21 H16 H 0 1 N N N N N N 12.858 -8.700 12.012 -2.307 -3.663 0.843 H21 A1AMK 47 A1AMK H23 H17 H 0 1 N N N N N N 13.205 -8.889 13.764 -2.318 -3.649 2.623 H23 A1AMK 48 A1AMK H24 H18 H 0 1 N N N N N N 8.319 -7.318 17.473 2.259 -4.341 -1.508 H24 A1AMK 49 A1AMK H1 H19 H 0 1 N N N N N N 4.177 -9.402 16.280 5.892 -1.084 -1.038 H1 A1AMK 50 A1AMK H7 H20 H 0 1 N N N N N N 2.625 -10.326 15.630 7.230 0.556 -0.682 H7 A1AMK 51 A1AMK H6 H21 H 0 1 N N N N N N 1.058 -11.500 13.466 7.506 3.365 -0.567 H6 A1AMK 52 A1AMK H5 H22 H 0 1 N N N N N N 0.536 -11.257 15.167 7.898 2.697 1.036 H5 A1AMK 53 A1AMK H4 H23 H 0 1 N N N N N N 0.600 -13.652 14.581 9.193 1.873 -1.602 H4 A1AMK 54 A1AMK H2 H24 H 0 1 N N N N N N 2.336 -13.503 14.144 9.935 2.912 -0.362 H2 A1AMK 55 A1AMK H3 H25 H 0 1 N N N N N N 1.814 -13.260 15.845 9.586 1.204 0.000 H3 A1AMK 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMK C C1 SING N N 1 A1AMK C1 N SING N N 2 A1AMK N C2 SING N N 3 A1AMK O C2 DOUB N N 4 A1AMK C2 C3 SING N N 5 A1AMK C3 C4 DOUB Y N 6 A1AMK C4 C5 SING Y N 7 A1AMK C5 C6 DOUB Y N 8 A1AMK C6 N1 SING N N 9 A1AMK N1 C7 SING N N 10 A1AMK C7 C8 SING N N 11 A1AMK C8 C9 DOUB Y N 12 A1AMK C9 C10 SING Y N 13 A1AMK C10 C11 DOUB Y N 14 A1AMK C11 C12 SING Y N 15 A1AMK C13 C12 DOUB Y N 16 A1AMK C8 C13 SING Y N 17 A1AMK C12 S SING N N 18 A1AMK O1 S DOUB N N 19 A1AMK S O2 DOUB N N 20 A1AMK C14 S SING N N 21 A1AMK C15 C14 SING N N 22 A1AMK O3 C15 SING N N 23 A1AMK C11 O3 SING N N 24 A1AMK C16 C7 SING N N 25 A1AMK C17 C16 SING N N 26 A1AMK C18 C16 SING N N 27 A1AMK N2 C6 SING Y N 28 A1AMK C19 N2 DOUB Y N 29 A1AMK N3 C19 SING Y N 30 A1AMK C20 N3 DOUB Y N 31 A1AMK C5 C20 SING Y N 32 A1AMK N4 C20 SING Y N 33 A1AMK C3 N4 SING Y N 34 A1AMK N1 H9 SING N N 35 A1AMK C4 H8 SING N N 36 A1AMK C7 H SING N N 37 A1AMK C10 H11 SING N N 38 A1AMK C13 H12 SING N N 39 A1AMK C15 H15 SING N N 40 A1AMK C15 H16 SING N N 41 A1AMK C17 H18 SING N N 42 A1AMK C17 H20 SING N N 43 A1AMK C17 H19 SING N N 44 A1AMK C14 H13 SING N N 45 A1AMK C14 H14 SING N N 46 A1AMK C9 H10 SING N N 47 A1AMK C16 H17 SING N N 48 A1AMK C18 H22 SING N N 49 A1AMK C18 H21 SING N N 50 A1AMK C18 H23 SING N N 51 A1AMK C19 H24 SING N N 52 A1AMK N4 H1 SING N N 53 A1AMK N H7 SING N N 54 A1AMK C1 H6 SING N N 55 A1AMK C1 H5 SING N N 56 A1AMK C H4 SING N N 57 A1AMK C H2 SING N N 58 A1AMK C H3 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMK SMILES ACDLabs 12.01 "CCNC(=O)c1cc2c([NH]1)ncnc2NC(c1ccc2OCCS(=O)(=O)c2c1)C(C)C" A1AMK InChI InChI 1.06 "InChI=1S/C21H25N5O4S/c1-4-22-21(27)15-10-14-19(25-15)23-11-24-20(14)26-18(12(2)3)13-5-6-16-17(9-13)31(28,29)8-7-30-16/h5-6,9-12,18H,4,7-8H2,1-3H3,(H,22,27)(H2,23,24,25,26)/t18-/m1/s1" A1AMK InChIKey InChI 1.06 DVKLXYXMGYYPLI-GOSISDBHSA-N A1AMK SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)c1[nH]c2ncnc(N[C@@H](C(C)C)c3ccc4OCC[S](=O)(=O)c4c3)c2c1" A1AMK SMILES CACTVS 3.385 "CCNC(=O)c1[nH]c2ncnc(N[CH](C(C)C)c3ccc4OCC[S](=O)(=O)c4c3)c2c1" A1AMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1cc2c([nH]1)ncnc2N[C@H](c3ccc4c(c3)S(=O)(=O)CCO4)C(C)C" A1AMK SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1cc2c([nH]1)ncnc2NC(c3ccc4c(c3)S(=O)(=O)CCO4)C(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMK "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[(1R)-1-(4,4-dioxo-3,4-dihydro-2H-1,4lambda~6~-benzoxathiin-6-yl)-2-methylpropyl]amino}-N-ethyl-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide" A1AMK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(1~{S})-1-[4,4-bis(oxidanylidene)-2,3-dihydro-1,4$l^{6}-benzoxathiin-6-yl]-2-methyl-propyl]amino]-~{N}-ethyl-7~{H}-pyrrolo[2,3-d]pyrimidine-6-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMK "Create component" 2024-04-11 RCSB A1AMK "Initial release" 2024-05-15 RCSB #