data_A1AMM # _chem_comp.id A1AMM _chem_comp.name 4-benzyl-L-phenylalanine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H17 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-13 _chem_comp.pdbx_modified_date 2025-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 255.312 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMM N N1 N 0 1 N N N Y Y N 118.930 133.624 105.774 3.656 1.472 0.548 N A1AMM 1 A1AMM C C1 C 0 1 N N N N Y Y 119.270 133.586 103.415 5.081 -0.307 -0.294 C A1AMM 2 A1AMM O O1 O 0 1 N N N N Y Y 118.086 133.574 102.994 5.773 0.561 -0.772 O A1AMM 3 A1AMM CA C2 C 0 1 N N S N Y N 119.620 132.901 104.729 3.722 0.033 0.261 CA A1AMM 4 A1AMM CB C3 C 0 1 N N N N N N 119.217 131.435 104.706 2.647 -0.333 -0.764 CB A1AMM 5 A1AMM CG C4 C 0 1 Y N N N N N 119.958 130.686 105.806 1.283 -0.108 -0.164 CG A1AMM 6 A1AMM CD1 C5 C 0 1 Y N N N N N 119.304 130.372 106.984 0.664 1.121 -0.296 CD1 A1AMM 7 A1AMM CD2 C6 C 0 1 Y N N N N N 121.279 130.318 105.625 0.649 -1.132 0.514 CD2 A1AMM 8 A1AMM CE1 C7 C 0 1 Y N N N N N 119.971 129.690 107.986 -0.587 1.327 0.255 CE1 A1AMM 9 A1AMM CE2 C8 C 0 1 Y N N N N N 121.944 129.635 106.626 -0.602 -0.926 1.065 CE2 A1AMM 10 A1AMM CZ C9 C 0 1 Y N N N N N 121.290 129.320 107.804 -1.219 0.305 0.937 CZ A1AMM 11 A1AMM CN1 C10 C 0 1 N N N N N N 122.040 128.565 108.894 -2.583 0.530 1.538 CN1 A1AMM 12 A1AMM CT C11 C 0 1 Y N N N N N 123.532 128.832 109.031 -3.642 0.171 0.528 CT A1AMM 13 A1AMM CI1 C12 C 0 1 Y N N N N N 124.438 128.080 108.308 -4.135 -1.120 0.472 CI1 A1AMM 14 A1AMM CI2 C13 C 0 1 Y N N N N N 123.974 129.837 109.871 -4.126 1.133 -0.338 CI2 A1AMM 15 A1AMM CK1 C14 C 0 1 Y N N N N N 125.793 128.329 108.430 -5.106 -1.449 -0.454 CK1 A1AMM 16 A1AMM CK2 C15 C 0 1 Y N N N N N 125.330 130.084 109.991 -5.098 0.804 -1.265 CK2 A1AMM 17 A1AMM CL C16 C 0 1 Y N N N N N 126.240 129.331 109.271 -5.586 -0.488 -1.324 CL A1AMM 18 A1AMM OXT O2 O 0 1 N Y N N Y Y 120.268 134.181 102.756 5.524 -1.574 -0.256 OXT A1AMM 19 A1AMM H H1 H 0 1 N N N Y Y N 119.133 133.206 106.659 3.809 2.015 -0.289 H1 A1AMM 20 A1AMM H2 H2 H 0 1 N Y N Y Y N 119.235 134.576 105.778 2.777 1.715 0.981 H2 A1AMM 21 A1AMM HA H4 H 0 1 N N N N Y N 120.707 132.968 104.885 3.553 -0.529 1.180 HCA A1AMM 22 A1AMM HB2 H5 H 0 1 N N N N N N 118.133 131.350 104.871 2.761 0.293 -1.650 HB2 A1AMM 23 A1AMM HB3 H6 H 0 1 N N N N N N 119.474 131.000 103.729 2.752 -1.381 -1.044 HB3 A1AMM 24 A1AMM HD1 H7 H 0 1 N N N N N N 118.272 130.659 107.121 1.157 1.920 -0.829 HD1 A1AMM 25 A1AMM HD2 H8 H 0 1 N N N N N N 121.789 130.563 104.705 1.131 -2.093 0.613 HD2 A1AMM 26 A1AMM HE1 H9 H 0 1 N N N N N N 119.463 129.448 108.907 -1.071 2.287 0.152 HE1 A1AMM 27 A1AMM HE2 H10 H 0 1 N N N N N N 122.976 129.347 106.488 -1.098 -1.726 1.594 HE2 A1AMM 28 A1AMM H3 H11 H 0 1 N N N N N N 121.570 128.820 109.855 -2.698 -0.096 2.423 H3 A1AMM 29 A1AMM H4 H12 H 0 1 N N N N N N 121.914 127.490 108.697 -2.688 1.578 1.818 H4 A1AMM 30 A1AMM HI1 H13 H 0 1 N N N N N N 124.089 127.299 107.649 -3.760 -1.871 1.152 HI1 A1AMM 31 A1AMM HI2 H14 H 0 1 N N N N N N 123.264 130.427 110.431 -3.745 2.142 -0.291 HI2 A1AMM 32 A1AMM HK1 H15 H 0 1 N N N N N N 126.503 127.740 107.868 -5.490 -2.458 -0.498 HK1 A1AMM 33 A1AMM HK2 H16 H 0 1 N N N N N N 125.679 130.867 110.648 -5.476 1.556 -1.941 HK2 A1AMM 34 A1AMM HCL H17 H 0 1 N N N N N N 127.298 129.526 109.366 -6.345 -0.746 -2.048 HCL A1AMM 35 A1AMM HXT H18 H 0 1 N Y N N Y Y 119.933 134.570 101.957 6.402 -1.743 -0.624 H5 A1AMM 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMM N CA SING N N 1 A1AMM C O DOUB N N 2 A1AMM C CA SING N N 3 A1AMM C OXT SING N N 4 A1AMM CA CB SING N N 5 A1AMM CB CG SING N N 6 A1AMM CG CD1 DOUB Y N 7 A1AMM CG CD2 SING Y N 8 A1AMM CD1 CE1 SING Y N 9 A1AMM CD2 CE2 DOUB Y N 10 A1AMM CE1 CZ DOUB Y N 11 A1AMM CE2 CZ SING Y N 12 A1AMM CZ CN1 SING N N 13 A1AMM CN1 CT SING N N 14 A1AMM CT CI1 DOUB Y N 15 A1AMM CT CI2 SING Y N 16 A1AMM CI1 CK1 SING Y N 17 A1AMM CI2 CK2 DOUB Y N 18 A1AMM CK1 CL DOUB Y N 19 A1AMM CK2 CL SING Y N 20 A1AMM N H SING N N 21 A1AMM N H2 SING N N 22 A1AMM CA HA SING N N 23 A1AMM CB HB2 SING N N 24 A1AMM CB HB3 SING N N 25 A1AMM CD1 HD1 SING N N 26 A1AMM CD2 HD2 SING N N 27 A1AMM CE1 HE1 SING N N 28 A1AMM CE2 HE2 SING N N 29 A1AMM CN1 H3 SING N N 30 A1AMM CN1 H4 SING N N 31 A1AMM CI1 HI1 SING N N 32 A1AMM CI2 HI2 SING N N 33 A1AMM CK1 HK1 SING N N 34 A1AMM CK2 HK2 SING N N 35 A1AMM CL HCL SING N N 36 A1AMM OXT HXT SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMM SMILES ACDLabs 12.01 "NC(Cc1ccc(cc1)Cc1ccccc1)C(=O)O" A1AMM InChI InChI 1.06 "InChI=1S/C16H17NO2/c17-15(16(18)19)11-14-8-6-13(7-9-14)10-12-4-2-1-3-5-12/h1-9,15H,10-11,17H2,(H,18,19)/t15-/m0/s1" A1AMM InChIKey InChI 1.06 FLAYVDDDWHBOIP-HNNXBMFYSA-N A1AMM SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccc(Cc2ccccc2)cc1)C(O)=O" A1AMM SMILES CACTVS 3.385 "N[CH](Cc1ccc(Cc2ccccc2)cc1)C(O)=O" A1AMM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cc2ccc(cc2)C[C@@H](C(=O)O)N" A1AMM SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cc2ccc(cc2)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMM "SYSTEMATIC NAME" ACDLabs 12.01 4-benzyl-L-phenylalanine A1AMM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-3-[4-(phenylmethyl)phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMM "Create component" 2024-04-13 RCSB A1AMM "Modify parent residue" 2024-09-13 RCSB A1AMM "Modify backbone" 2024-09-25 PDBE A1AMM "Modify PCM" 2024-09-27 PDBE A1AMM "Initial release" 2025-02-05 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AMM _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type Benzylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #