data_A1AMO # _chem_comp.id A1AMO _chem_comp.name "N-[2-(glycylamino)ethyl]-N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H27 N4 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-15 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.349 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AMO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BE3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AMO O13 O1 O 0 1 N N N N N N -58.658 61.513 -13.290 4.388 -3.059 0.516 O13 A1AMO 1 A1AMO O21 O2 O 0 1 N N N N N N -61.513 57.637 -12.977 4.156 2.802 0.993 O21 A1AMO 2 A1AMO C11 C1 C 0 1 N N N N N N -59.434 63.736 -12.862 2.210 -2.059 0.442 C11 A1AMO 3 A1AMO C12 C2 C 0 1 N N S N N N -59.826 62.271 -13.141 3.422 -2.467 -0.355 C12 A1AMO 4 A1AMO C02 C3 C 0 1 N N N N N N -55.522 69.438 -7.070 -8.397 0.735 -0.237 C02 A1AMO 5 A1AMO C04 C4 C 0 1 N N N N N N -57.151 69.325 -9.009 -6.043 0.124 -0.380 C04 A1AMO 6 A1AMO C05 C5 C 0 1 N N N N N N -57.534 67.843 -8.942 -4.892 -0.206 0.573 C05 A1AMO 7 A1AMO C07 C6 C 0 1 N N N N N N -56.475 66.077 -10.425 -2.537 -0.817 0.430 C07 A1AMO 8 A1AMO C08 C7 C 0 1 N N N N N N -57.830 65.891 -11.140 -1.295 -1.118 -0.368 C08 A1AMO 9 A1AMO C09 C8 C 0 1 N N N N N N -57.656 65.534 -12.630 -0.144 -1.448 0.585 C09 A1AMO 10 A1AMO C14 C9 C 0 1 N N N N N N -60.675 62.146 -14.419 4.030 -1.235 -1.028 C14 A1AMO 11 A1AMO C15 C10 C 0 1 N N N N N N -60.046 62.990 -15.521 3.045 -0.680 -2.059 C15 A1AMO 12 A1AMO C16 C11 C 0 1 N N N N N N -60.742 60.707 -14.916 4.317 -0.167 0.029 C16 A1AMO 13 A1AMO C22 C12 C 0 1 N N N N N N -62.103 62.632 -14.180 5.333 -1.626 -1.727 C22 A1AMO 14 A1AMO C25 C13 C 0 1 N N N N N N -55.162 69.933 -5.670 -9.640 1.035 0.561 C25 A1AMO 15 A1AMO N03 N1 N 0 1 N N N N N N -56.808 69.797 -7.674 -7.251 0.416 0.395 N03 A1AMO 16 A1AMO N06 N2 N 0 1 N N N N N N -56.364 67.047 -9.334 -3.684 -0.498 -0.203 N06 A1AMO 17 A1AMO N10 N3 N 0 1 N N N N N N -58.030 64.139 -12.892 1.064 -1.740 -0.191 N10 A1AMO 18 A1AMO N29 N4 N 0 1 N N N N N N -54.754 71.320 -5.753 -10.744 1.352 -0.354 N29 A1AMO 19 A1AMO O01 O3 O 0 1 N N N N N N -54.756 68.761 -7.664 -8.429 0.780 -1.449 O01 A1AMO 20 A1AMO O17 O4 O 0 1 N N N N N N -60.601 59.822 -13.838 4.885 0.984 -0.600 O17 A1AMO 21 A1AMO O19 O5 O 0 1 N N N N N N -61.992 59.687 -11.619 5.789 3.443 -0.822 O19 A1AMO 22 A1AMO O23 O6 O 0 1 N N N N N N -60.256 64.550 -12.617 2.266 -2.017 1.652 O23 A1AMO 23 A1AMO O24 O7 O 0 1 N N N N N N -55.533 65.431 -10.751 -2.506 -0.863 1.641 O24 A1AMO 24 A1AMO P18 P1 P 0 1 N N N N N N -61.858 59.064 -13.127 5.313 2.306 0.214 P18 A1AMO 25 A1AMO H131 H1 H 0 0 N N N N N N -58.130 61.586 -12.504 4.694 -2.471 1.220 H131 A1AMO 26 A1AMO H121 H2 H 0 0 N N N N N N -60.418 61.901 -12.291 3.129 -3.190 -1.117 H121 A1AMO 27 A1AMO H041 H3 H 0 0 N N N N N N -58.000 69.906 -9.397 -5.778 0.993 -0.982 H041 A1AMO 28 A1AMO H042 H4 H 0 0 N N N N N N -56.286 69.451 -9.676 -6.228 -0.728 -1.035 H042 A1AMO 29 A1AMO H052 H5 H 0 0 N N N N N N -57.835 67.582 -7.916 -4.707 0.646 1.227 H052 A1AMO 30 A1AMO H051 H6 H 0 0 N N N N N N -58.368 67.643 -9.631 -5.156 -1.076 1.174 H051 A1AMO 31 A1AMO H081 H7 H 0 0 N N N N N N -58.402 66.827 -11.064 -1.480 -1.969 -1.023 H081 A1AMO 32 A1AMO H082 H8 H 0 0 N N N N N N -58.385 65.081 -10.644 -1.030 -0.248 -0.970 H082 A1AMO 33 A1AMO H091 H9 H 0 0 N N N N N N -58.295 66.196 -13.234 0.041 -0.596 1.239 H091 A1AMO 34 A1AMO H092 H10 H 0 0 N N N N N N -56.603 65.682 -12.913 -0.409 -2.317 1.186 H092 A1AMO 35 A1AMO H151 H11 H 0 0 N N N N N N -60.648 62.905 -16.438 2.166 -0.287 -1.548 H151 A1AMO 36 A1AMO H153 H12 H 0 0 N N N N N N -60.011 64.042 -15.202 3.524 0.120 -2.625 H153 A1AMO 37 A1AMO H152 H13 H 0 0 N N N N N N -59.025 62.632 -15.719 2.744 -1.476 -2.740 H152 A1AMO 38 A1AMO H162 H14 H 0 0 N N N N N N -59.931 60.533 -15.639 3.388 0.112 0.526 H162 A1AMO 39 A1AMO H161 H15 H 0 0 N N N N N N -61.712 60.535 -15.405 5.019 -0.562 0.763 H161 A1AMO 40 A1AMO H223 H16 H 0 0 N N N N N N -62.685 62.531 -15.108 5.121 -2.345 -2.517 H223 A1AMO 41 A1AMO H221 H17 H 0 0 N N N N N N -62.568 62.027 -13.388 5.795 -0.737 -2.158 H221 A1AMO 42 A1AMO H222 H18 H 0 0 N N N N N N -62.084 63.688 -13.872 6.014 -2.073 -1.002 H222 A1AMO 43 A1AMO H251 H19 H 0 0 N N N N N N -56.038 69.845 -5.011 -9.904 0.166 1.162 H251 A1AMO 44 A1AMO H252 H20 H 0 0 N N N N N N -54.336 69.329 -5.266 -9.454 1.887 1.215 H252 A1AMO 45 A1AMO H031 H21 H 0 0 N N N N N N -57.453 70.369 -7.167 -7.225 0.379 1.364 H031 A1AMO 46 A1AMO H061 H22 H 0 0 N N N N N N -55.493 67.167 -8.857 -3.709 -0.462 -1.172 H061 A1AMO 47 A1AMO H101 H23 H 0 0 N N N N N N -57.321 63.462 -13.092 1.038 -1.703 -1.160 H101 A1AMO 48 A1AMO H291 H24 H 0 0 N N N N N N -54.516 71.653 -4.841 -10.894 0.604 -1.014 H291 A1AMO 49 A1AMO H292 H25 H 0 0 N N N N N N -53.959 71.398 -6.354 -11.590 1.557 0.157 H292 A1AMO 50 A1AMO H2 H27 H 0 1 N N N N N N -61.821 59.006 -10.978 6.062 4.270 -0.400 H2 A1AMO 51 A1AMO O1 O8 O 0 1 N Y N N N N -63.217 59.267 -14.026 6.523 1.952 1.215 O1 A1AMO 52 A1AMO H1 H28 H 0 1 N N N N N N -63.548 58.419 -14.296 7.315 1.620 0.772 H1 A1AMO 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AMO C02 O01 DOUB N N 1 A1AMO C04 N03 SING N N 2 A1AMO C05 C04 SING N N 3 A1AMO N06 C05 SING N N 4 A1AMO C07 N06 SING N N 5 A1AMO C09 C08 SING N N 6 A1AMO N10 C09 SING N N 7 A1AMO C11 N10 SING N N 8 A1AMO O13 C12 SING N N 9 A1AMO C14 C12 SING N N 10 A1AMO C15 C14 SING N N 11 A1AMO O17 C16 SING N N 12 A1AMO P18 O17 SING N N 13 A1AMO O19 P18 SING N N 14 A1AMO O21 P18 DOUB N N 15 A1AMO C16 C14 SING N N 16 A1AMO C22 C14 SING N N 17 A1AMO C12 C11 SING N N 18 A1AMO O23 C11 DOUB N N 19 A1AMO C08 C07 SING N N 20 A1AMO O24 C07 DOUB N N 21 A1AMO N03 C02 SING N N 22 A1AMO C25 C02 SING N N 23 A1AMO N29 C25 SING N N 24 A1AMO O13 H131 SING N N 25 A1AMO C12 H121 SING N N 26 A1AMO C04 H041 SING N N 27 A1AMO C04 H042 SING N N 28 A1AMO C05 H052 SING N N 29 A1AMO C05 H051 SING N N 30 A1AMO C08 H081 SING N N 31 A1AMO C08 H082 SING N N 32 A1AMO C09 H091 SING N N 33 A1AMO C09 H092 SING N N 34 A1AMO C15 H151 SING N N 35 A1AMO C15 H153 SING N N 36 A1AMO C15 H152 SING N N 37 A1AMO C16 H162 SING N N 38 A1AMO C16 H161 SING N N 39 A1AMO C22 H223 SING N N 40 A1AMO C22 H221 SING N N 41 A1AMO C22 H222 SING N N 42 A1AMO C25 H251 SING N N 43 A1AMO C25 H252 SING N N 44 A1AMO N03 H031 SING N N 45 A1AMO N06 H061 SING N N 46 A1AMO N10 H101 SING N N 47 A1AMO N29 H291 SING N N 48 A1AMO N29 H292 SING N N 49 A1AMO O19 H2 SING N N 50 A1AMO P18 O1 SING N N 51 A1AMO O1 H1 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AMO SMILES ACDLabs 12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCNC(=O)CN" A1AMO InChI InChI 1.06 "InChI=1S/C13H27N4O8P/c1-13(2,8-25-26(22,23)24)11(20)12(21)17-4-3-9(18)15-5-6-16-10(19)7-14/h11,20H,3-8,14H2,1-2H3,(H,15,18)(H,16,19)(H,17,21)(H2,22,23,24)" A1AMO InChIKey InChI 1.06 ZCWBBGZAVLIBIM-UHFFFAOYSA-N A1AMO SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCNC(=O)CN" A1AMO SMILES CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCNC(=O)CN" A1AMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCNC(=O)CN)O" A1AMO SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCNC(=O)CN)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AMO "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(glycylamino)ethyl]-N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide" A1AMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[2-(2-azanylethanoylamino)ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AMO "Create component" 2024-04-15 RCSB A1AMO "Modify PCM" 2024-09-27 PDBE A1AMO "Initial release" 2024-11-20 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AMO _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #