data_A1AN5 # _chem_comp.id A1AN5 _chem_comp.name "7-{(1S)-1-[(6,7-dihydro[1,4]dioxino[2,3-d]pyrimidin-4-yl)amino]-2-methylpropyl}-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-18 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AN5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H1B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AN5 N1 N1 N 0 1 Y N N N N N 5.467 -14.848 15.410 -2.836 -1.711 0.533 N1 A1AN5 1 A1AN5 C4 C1 C 0 1 Y N N N N N 6.037 -15.523 16.430 -2.698 -0.445 0.145 C4 A1AN5 2 A1AN5 C5 C2 C 0 1 Y N N N N N 6.286 -14.551 14.397 -3.969 -2.139 1.053 C5 A1AN5 3 A1AN5 C6 C3 C 0 1 Y N N N N N 8.133 -15.430 15.310 -4.954 -0.068 0.849 C6 A1AN5 4 A1AN5 C7 C4 C 0 1 Y N N N N N 7.412 -15.814 16.444 -3.778 0.425 0.299 C7 A1AN5 5 A1AN5 C8 C5 C 0 1 N N N N N N 9.366 -16.882 17.302 -4.900 2.447 -0.243 C8 A1AN5 6 A1AN5 C10 C6 C 0 1 Y N N N N N 3.891 -14.324 18.635 0.914 -0.147 -0.566 C10 A1AN5 7 A1AN5 C13 C7 C 0 1 Y N N N N N 3.954 -12.094 20.376 3.314 1.265 -0.600 C13 A1AN5 8 A1AN5 C15 C8 C 0 1 Y N N N N N 4.559 -14.395 19.853 2.027 -0.637 0.086 C15 A1AN5 9 A1AN5 C17 C9 C 0 1 N N N N N N 5.013 -10.851 22.293 5.545 1.863 0.431 C17 A1AN5 10 A1AN5 O3 O1 O 0 1 N N N N N N 6.858 -13.545 21.897 4.700 -1.938 0.486 O3 A1AN5 11 A1AN5 S S1 S 0 1 N N N N N N 5.450 -13.548 22.192 4.588 -0.606 0.967 S A1AN5 12 A1AN5 O2 O2 O 0 1 N N N N N N 4.910 -14.708 22.845 4.286 -0.340 2.330 O2 A1AN5 13 A1AN5 C16 C10 C 0 1 N N N N N N 5.059 -12.119 23.139 5.999 0.396 0.413 C16 A1AN5 14 A1AN5 C18 C11 C 0 1 N N N N N N 3.885 -10.905 21.301 4.561 2.092 -0.702 C18 A1AN5 15 A1AN5 C12 C12 C 0 1 Y N N N N N 3.310 -12.042 19.142 2.184 1.758 -1.250 C12 A1AN5 16 A1AN5 C11 C13 C 0 1 Y N N N N N 3.278 -13.131 18.291 0.996 1.061 -1.234 C11 A1AN5 17 A1AN5 C14 C14 C 0 1 Y N N N N N 4.591 -13.300 20.705 3.221 0.069 0.076 C14 A1AN5 18 A1AN5 C3 C15 C 0 1 N N S N N N 3.896 -15.507 17.685 -0.377 -0.924 -0.555 C3 A1AN5 19 A1AN5 C1 C16 C 0 1 N N N N N N 2.981 -16.656 18.164 -0.523 -1.689 -1.872 C1 A1AN5 20 A1AN5 C2 C17 C 0 1 N N N N N N 1.582 -16.157 18.515 -1.834 -2.478 -1.860 C2 A1AN5 21 A1AN5 C C18 C 0 1 N N N N N N 2.898 -17.776 17.127 -0.533 -0.700 -3.039 C A1AN5 22 A1AN5 N N2 N 0 1 N N N N N N 5.240 -15.997 17.412 -1.502 0.002 -0.401 N A1AN5 23 A1AN5 O O3 O 0 1 N N N N N N 8.028 -16.382 17.530 -3.672 1.725 -0.082 O A1AN5 24 A1AN5 C9 C19 C 0 1 N N N N N N 10.167 -15.998 16.418 -5.796 2.148 0.966 C9 A1AN5 25 A1AN5 O1 O4 O 0 1 N N N N N N 9.477 -15.648 15.203 -6.033 0.736 1.015 O1 A1AN5 26 A1AN5 N2 N3 N 0 1 Y N N N N N 7.587 -14.820 14.272 -5.010 -1.347 1.212 N2 A1AN5 27 A1AN5 H9 H1 H 0 1 N N N N N N 5.835 -14.023 13.570 -4.048 -3.172 1.357 H9 A1AN5 28 A1AN5 H10 H2 H 0 1 N N N N N N 9.879 -16.968 18.271 -4.694 3.516 -0.293 H10 A1AN5 29 A1AN5 H11 H3 H 0 1 N N N N N N 9.295 -17.875 16.835 -5.398 2.125 -1.158 H11 A1AN5 30 A1AN5 H16 H4 H 0 1 N N N N N N 5.057 -15.310 20.138 1.968 -1.580 0.609 H16 A1AN5 31 A1AN5 H19 H5 H 0 1 N N N N N N 4.870 -9.983 22.953 5.062 2.083 1.383 H19 A1AN5 32 A1AN5 H20 H6 H 0 1 N N N N N N 5.964 -10.746 21.751 6.410 2.514 0.302 H20 A1AN5 33 A1AN5 H18 H7 H 0 1 N N N N N N 4.075 -12.266 23.608 6.286 0.108 -0.599 H18 A1AN5 34 A1AN5 H17 H8 H 0 1 N N N N N N 5.823 -11.994 23.920 6.841 0.259 1.092 H17 A1AN5 35 A1AN5 H21 H9 H 0 1 N N N N N N 2.936 -10.950 21.855 5.056 1.859 -1.645 H21 A1AN5 36 A1AN5 H22 H10 H 0 1 N N N N N N 3.912 -9.989 20.693 4.280 3.145 -0.712 H22 A1AN5 37 A1AN5 H15 H11 H 0 1 N N N N N N 2.823 -11.126 18.842 2.240 2.701 -1.774 H15 A1AN5 38 A1AN5 H14 H12 H 0 1 N N N N N N 2.767 -13.050 17.343 0.130 1.457 -1.743 H14 A1AN5 39 A1AN5 H H13 H 0 1 N N N N N N 3.475 -15.151 16.733 -0.370 -1.629 0.276 H A1AN5 40 A1AN5 H4 H14 H 0 1 N N N N N N 3.427 -17.077 19.077 0.315 -2.378 -1.986 H4 A1AN5 41 A1AN5 H5 H15 H 0 1 N N N N N N 1.656 -15.352 19.261 -1.938 -3.023 -2.799 H5 A1AN5 42 A1AN5 H6 H16 H 0 1 N N N N N N 1.092 -15.772 17.608 -1.826 -3.183 -1.029 H6 A1AN5 43 A1AN5 H7 H17 H 0 1 N N N N N N 0.990 -16.987 18.928 -2.671 -1.790 -1.746 H7 A1AN5 44 A1AN5 H1 H18 H 0 1 N N N N N N 3.912 -18.126 16.883 0.401 -0.138 -3.047 H1 A1AN5 45 A1AN5 H3 H19 H 0 1 N N N N N N 2.310 -18.611 17.536 -0.637 -1.245 -3.977 H3 A1AN5 46 A1AN5 H2 H20 H 0 1 N N N N N N 2.412 -17.397 16.216 -1.370 -0.011 -2.924 H2 A1AN5 47 A1AN5 H8 H21 H 0 1 N N N N N N 5.752 -15.868 18.261 -1.412 0.926 -0.680 H8 A1AN5 48 A1AN5 H13 H22 H 0 1 N N N N N N 10.403 -15.074 16.966 -5.297 2.468 1.881 H13 A1AN5 49 A1AN5 H12 H23 H 0 1 N N N N N N 11.100 -16.517 16.155 -6.743 2.676 0.861 H12 A1AN5 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AN5 C C1 SING N N 1 A1AN5 C2 C1 SING N N 2 A1AN5 C1 C3 SING N N 3 A1AN5 N C3 SING N N 4 A1AN5 C4 N SING N N 5 A1AN5 C4 N1 DOUB Y N 6 A1AN5 N1 C5 SING Y N 7 A1AN5 C5 N2 DOUB Y N 8 A1AN5 N2 C6 SING Y N 9 A1AN5 C6 C7 DOUB Y N 10 A1AN5 C7 C4 SING Y N 11 A1AN5 O C7 SING N N 12 A1AN5 C8 O SING N N 13 A1AN5 C9 C8 SING N N 14 A1AN5 O1 C9 SING N N 15 A1AN5 C6 O1 SING N N 16 A1AN5 C3 C10 SING N N 17 A1AN5 C10 C11 DOUB Y N 18 A1AN5 C11 C12 SING Y N 19 A1AN5 C12 C13 DOUB Y N 20 A1AN5 C13 C14 SING Y N 21 A1AN5 C15 C14 DOUB Y N 22 A1AN5 C10 C15 SING Y N 23 A1AN5 C14 S SING N N 24 A1AN5 O2 S DOUB N N 25 A1AN5 S O3 DOUB N N 26 A1AN5 C16 S SING N N 27 A1AN5 C17 C16 SING N N 28 A1AN5 C18 C17 SING N N 29 A1AN5 C13 C18 SING N N 30 A1AN5 C5 H9 SING N N 31 A1AN5 C8 H10 SING N N 32 A1AN5 C8 H11 SING N N 33 A1AN5 C15 H16 SING N N 34 A1AN5 C17 H19 SING N N 35 A1AN5 C17 H20 SING N N 36 A1AN5 C16 H18 SING N N 37 A1AN5 C16 H17 SING N N 38 A1AN5 C18 H21 SING N N 39 A1AN5 C18 H22 SING N N 40 A1AN5 C12 H15 SING N N 41 A1AN5 C11 H14 SING N N 42 A1AN5 C3 H SING N N 43 A1AN5 C1 H4 SING N N 44 A1AN5 C2 H5 SING N N 45 A1AN5 C2 H6 SING N N 46 A1AN5 C2 H7 SING N N 47 A1AN5 C H1 SING N N 48 A1AN5 C H3 SING N N 49 A1AN5 C H2 SING N N 50 A1AN5 N H8 SING N N 51 A1AN5 C9 H13 SING N N 52 A1AN5 C9 H12 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AN5 SMILES ACDLabs 12.01 "CC(C)C(Nc1ncnc2OCCOc21)c1ccc2CCCS(=O)(=O)c2c1" A1AN5 InChI InChI 1.06 "InChI=1S/C19H23N3O4S/c1-12(2)16(22-18-17-19(21-11-20-18)26-8-7-25-17)14-6-5-13-4-3-9-27(23,24)15(13)10-14/h5-6,10-12,16H,3-4,7-9H2,1-2H3,(H,20,21,22)/t16-/m0/s1" A1AN5 InChIKey InChI 1.06 PIXRXRGTMYVVJI-INIZCTEOSA-N A1AN5 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](Nc1ncnc2OCCOc12)c3ccc4CCC[S](=O)(=O)c4c3" A1AN5 SMILES CACTVS 3.385 "CC(C)[CH](Nc1ncnc2OCCOc12)c3ccc4CCC[S](=O)(=O)c4c3" A1AN5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(ncn3)OCCO4" A1AN5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(ncn3)OCCO4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AN5 "SYSTEMATIC NAME" ACDLabs 12.01 "7-{(1S)-1-[(6,7-dihydro[1,4]dioxino[2,3-d]pyrimidin-4-yl)amino]-2-methylpropyl}-3,4-dihydro-1lambda~6~-benzothiopyran-1,1(2H)-dione" A1AN5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]-6,7-dihydro-[1,4]dioxino[2,3-d]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AN5 "Create component" 2024-04-18 RCSB A1AN5 "Initial release" 2024-05-15 RCSB #