data_A1ANT # _chem_comp.id A1ANT _chem_comp.name "[(3~{S},4~{R},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N2 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-17 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.142 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ANT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BEZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ANT C1 C1 C 0 1 N N R N N N -4.592 13.479 -20.599 2.920 1.728 -0.878 C1 A1ANT 1 A1ANT C2 C2 C 0 1 N N R N N N -5.271 14.484 -21.539 1.977 2.015 0.311 C2 A1ANT 2 A1ANT C3 C3 C 0 1 N N N N N N -4.617 15.827 -21.228 2.819 1.651 1.554 C3 A1ANT 3 A1ANT C4 C4 C 0 1 N N R N N N -3.939 14.385 -19.539 4.220 1.225 -0.213 C4 A1ANT 4 A1ANT C5 C5 C 0 1 N N N N N N -5.699 14.793 -17.865 4.328 -0.948 -1.298 C5 A1ANT 5 A1ANT C6 C6 C 0 1 N N N N N N -3.759 13.505 -17.218 4.144 -0.873 1.051 C6 A1ANT 6 A1ANT C7 C7 C 0 1 N N N N N N -4.181 13.328 -15.956 4.165 -2.222 1.102 C7 A1ANT 7 A1ANT N1 N1 N 0 1 N N N N N N -4.485 14.204 -18.171 4.232 -0.239 -0.158 N1 A1ANT 8 A1ANT N2 N2 N 0 1 N N N N N N -6.123 14.598 -16.581 4.341 -2.294 -1.277 N2 A1ANT 9 A1ANT O1 O1 O 0 1 N N N N N N -3.665 12.676 -21.307 3.168 2.924 -1.621 O1 A1ANT 10 A1ANT C8 C8 C 0 1 N N N N N N -3.398 12.553 -14.929 4.088 -2.937 2.427 C8 A1ANT 11 A1ANT C9 C9 C 0 1 N N N N N N -5.451 13.919 -15.585 4.261 -2.956 -0.105 C9 A1ANT 12 A1ANT O10 O2 O 0 1 N N N N N N -9.060 15.321 -22.750 -4.010 1.554 -0.356 O10 A1ANT 13 A1ANT O11 O3 O 0 1 N N N N N N -7.166 12.348 -22.223 -0.918 2.722 1.253 O11 A1ANT 14 A1ANT O12 O4 O 0 1 N N N N N N -4.151 15.743 -19.892 4.190 1.778 1.121 O12 A1ANT 15 A1ANT O13 O5 O 0 1 N N N N N N -6.371 15.433 -18.661 4.400 -0.365 -2.362 O13 A1ANT 16 A1ANT O14 O6 O 0 1 N N N N N N -5.960 13.855 -14.480 4.283 -4.173 -0.084 O14 A1ANT 17 A1ANT O2 O7 O 0 1 N N N N N N -6.671 14.611 -21.293 0.812 1.191 0.236 O2 A1ANT 18 A1ANT O3 O8 O 0 1 N N N N N N -7.071 12.728 -19.664 -0.844 2.574 -1.266 O3 A1ANT 19 A1ANT O4 O9 O 0 1 N N N N N N -8.968 13.642 -20.905 -1.746 0.584 0.197 O4 A1ANT 20 A1ANT O5 O10 O 0 1 N N N N N N -11.133 15.101 -21.138 -3.644 0.751 2.008 O5 A1ANT 21 A1ANT O6 O11 O 0 1 N N N N N N -10.308 13.257 -22.866 -3.880 -0.940 0.009 O6 A1ANT 22 A1ANT O7 O12 O 0 1 N N N N N N -12.677 13.041 -23.669 -5.674 -1.133 -1.903 O7 A1ANT 23 A1ANT O8 O13 O 0 1 N N N N N N -11.705 11.417 -21.987 -5.330 -3.121 -0.217 O8 A1ANT 24 A1ANT O9 O14 O 0 1 N N N N N N -10.903 11.378 -24.389 -6.352 -0.934 0.520 O9 A1ANT 25 A1ANT P1 P1 P 0 1 N N N N N N -7.422 13.216 -21.030 -0.679 1.789 0.130 P1 A1ANT 26 A1ANT P2 P2 P 0 1 N N N N N N -9.937 14.469 -21.880 -3.335 0.510 0.447 P2 A1ANT 27 A1ANT P3 P3 P 0 1 N N N N N N -11.475 12.214 -23.251 -5.331 -1.519 -0.378 P3 A1ANT 28 A1ANT H2 H1 H 0 1 N N N N N N -5.361 12.857 -20.117 2.498 0.958 -1.523 H2 A1ANT 29 A1ANT H3 H2 H 0 1 N N N N N N -5.073 14.206 -22.585 1.698 3.069 0.331 H3 A1ANT 30 A1ANT H5 H3 H 0 1 N N N N N N -3.776 16.009 -21.914 2.613 2.346 2.368 H5 A1ANT 31 A1ANT H4 H4 H 0 1 N N N N N N -5.352 16.640 -21.325 2.612 0.628 1.866 H4 A1ANT 32 A1ANT H6 H5 H 0 1 N N N N N N -2.860 14.170 -19.522 5.091 1.590 -0.758 H6 A1ANT 33 A1ANT H8 H6 H 0 1 N N N N N N -2.808 13.082 -17.505 4.071 -0.296 1.962 H8 A1ANT 34 A1ANT H7 H7 H 0 1 N N N N N N -7.011 14.987 -16.338 4.407 -2.789 -2.108 H7 A1ANT 35 A1ANT H1 H8 H 0 1 N N N N N N -3.256 12.062 -20.709 2.375 3.317 -2.010 H1 A1ANT 36 A1ANT H11 H9 H 0 1 N N N N N N -3.947 12.548 -13.976 3.044 -3.129 2.676 H11 A1ANT 37 A1ANT H9 H10 H 0 1 N N N N N N -3.259 11.519 -15.277 4.625 -3.883 2.361 H9 A1ANT 38 A1ANT H10 H11 H 0 1 N N N N N N -2.415 13.026 -14.784 4.538 -2.317 3.201 H10 A1ANT 39 A1ANT H12 H12 H 0 1 N N N N N N -6.698 11.856 -19.725 -0.701 2.023 -2.047 H12 A1ANT 40 A1ANT H13 H13 H 0 1 N N N N N N -11.175 16.029 -21.337 -3.232 0.102 2.595 H13 A1ANT 41 A1ANT H14 H14 H 0 1 N N N N N N -12.864 12.887 -24.588 -5.045 -1.485 -2.549 H14 A1ANT 42 A1ANT H15 H15 H 0 1 N N N N N N -11.446 10.514 -22.130 -6.175 -3.539 -0.435 H15 A1ANT 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ANT O1 C1 SING N N 1 A1ANT C1 C2 SING N N 2 A1ANT C2 O2 SING N N 3 A1ANT O2 P1 SING N N 4 A1ANT P1 O3 SING N N 5 A1ANT P1 O4 SING N N 6 A1ANT O4 P2 SING N N 7 A1ANT P2 O5 SING N N 8 A1ANT P2 O6 SING N N 9 A1ANT O6 P3 SING N N 10 A1ANT P3 O7 SING N N 11 A1ANT P3 O8 SING N N 12 A1ANT P3 O9 DOUB N N 13 A1ANT P2 O10 DOUB N N 14 A1ANT P1 O11 DOUB N N 15 A1ANT C2 C3 SING N N 16 A1ANT C3 O12 SING N N 17 A1ANT O12 C4 SING N N 18 A1ANT C4 N1 SING N N 19 A1ANT N1 C5 SING N N 20 A1ANT C5 N2 SING N N 21 A1ANT C5 O13 DOUB N N 22 A1ANT N1 C6 SING N N 23 A1ANT C6 C7 DOUB N N 24 A1ANT C7 C8 SING N N 25 A1ANT C7 C9 SING N N 26 A1ANT C9 O14 DOUB N N 27 A1ANT C1 C4 SING N N 28 A1ANT N2 C9 SING N N 29 A1ANT C1 H2 SING N N 30 A1ANT C2 H3 SING N N 31 A1ANT C3 H5 SING N N 32 A1ANT C3 H4 SING N N 33 A1ANT C4 H6 SING N N 34 A1ANT C6 H8 SING N N 35 A1ANT N2 H7 SING N N 36 A1ANT O1 H1 SING N N 37 A1ANT C8 H11 SING N N 38 A1ANT C8 H9 SING N N 39 A1ANT C8 H10 SING N N 40 A1ANT O3 H12 SING N N 41 A1ANT O5 H13 SING N N 42 A1ANT O7 H14 SING N N 43 A1ANT O8 H15 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ANT InChI InChI 1.06 "InChI=1S/C9H15N2O14P3/c1-4-2-11(9(14)10-7(4)13)8-6(12)5(3-22-8)23-27(18,19)25-28(20,21)24-26(15,16)17/h2,5-6,8,12H,3H2,1H3,(H,18,19)(H,20,21)(H,10,13,14)(H2,15,16,17)/t5-,6-,8-/m1/s1" A1ANT InChIKey InChI 1.06 JSABWHHNWKQTOZ-ATRFCDNQSA-N A1ANT SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@@H]2OC[C@@H](O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@H]2O)C(=O)NC1=O" A1ANT SMILES CACTVS 3.385 "CC1=CN([CH]2OC[CH](O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH]2O)C(=O)NC1=O" A1ANT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@H](CO2)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" A1ANT SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)C2C(C(CO2)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id A1ANT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(3~{S},4~{R},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ANT "Create component" 2024-04-17 RCSB A1ANT "Initial release" 2024-07-10 RCSB #