data_A1AO0 # _chem_comp.id A1AO0 _chem_comp.name "5-fluoro-3-{[(methoxycarbonyl)amino]methyl}-1-[(naphthalen-1-yl)methyl]-1H-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H19 F N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-19 _chem_comp.pdbx_modified_date 2025-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 406.406 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AO0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AO0 N1 N1 N 0 1 Y N N N N N -26.679 20.760 6.495 0.498 -0.005 -1.278 N1 A1AO0 1 A1AO0 C4 C1 C 0 1 Y N N N N N -27.006 20.398 8.706 -0.944 -1.576 -0.581 C4 A1AO0 2 A1AO0 C5 C2 C 0 1 Y N N N N N -26.031 20.594 7.721 0.414 -1.304 -0.833 C5 A1AO0 3 A1AO0 C6 C3 C 0 1 N N N N N N -26.002 21.061 5.236 1.731 0.690 -1.656 C6 A1AO0 4 A1AO0 C7 C4 C 0 1 N N N N N N -29.064 20.842 5.647 -1.107 1.902 -1.737 C7 A1AO0 5 A1AO0 C8 C5 C 0 1 N N N N N N -29.620 20.337 8.739 -3.159 -0.220 -0.790 C8 A1AO0 6 A1AO0 C10 C6 C 0 1 N N N N N N -30.036 17.991 8.474 -4.777 0.525 0.873 C10 A1AO0 7 A1AO0 N12 N2 N 0 1 N N N N N N -29.796 19.018 9.296 -3.492 0.285 0.544 N12 A1AO0 8 A1AO0 C13 C7 C 0 1 Y N N N N N -26.609 20.176 10.024 -1.323 -2.842 -0.113 C13 A1AO0 9 A1AO0 C17 C8 C 0 1 Y N N N N N -25.259 20.158 10.295 -0.373 -3.801 0.096 C17 A1AO0 10 A1AO0 C20 C9 C 0 1 Y N N N N N -24.284 20.353 9.340 0.970 -3.532 -0.150 C20 A1AO0 11 A1AO0 C24 C10 C 0 1 Y N N N N N -26.309 24.828 5.625 2.424 2.974 1.274 C24 A1AO0 12 A1AO0 C26 C11 C 0 1 Y N N N N N -25.793 25.307 4.460 3.524 2.420 1.851 C26 A1AO0 13 A1AO0 C28 C12 C 0 1 N N N N N N -30.443 15.668 8.380 -6.487 1.224 2.384 C28 A1AO0 14 A1AO0 C2 C13 C 0 1 Y N N N N N -28.285 20.486 8.063 -1.668 -0.402 -0.900 C2 A1AO0 15 A1AO0 C3 C14 C 0 1 Y N N N N N -28.054 20.724 6.729 -0.774 0.535 -1.316 C3 A1AO0 16 A1AO0 C9 C15 C 0 1 Y N N N N N -25.911 22.545 4.945 2.368 1.286 -0.427 C9 A1AO0 17 A1AO0 C11 C16 C 0 1 Y N N N N N -24.675 20.572 8.027 1.365 -2.296 -0.611 C11 A1AO0 18 A1AO0 C14 C17 C 0 1 Y N N N N N -25.362 23.016 3.709 3.511 0.691 0.135 C14 A1AO0 19 A1AO0 O15 O1 O 0 1 N N N N N N -30.114 18.080 7.266 -5.659 0.322 0.063 O15 A1AO0 20 A1AO0 O16 O2 O 0 1 N N N N N N -30.068 21.533 5.679 -2.248 2.309 -1.634 O16 A1AO0 21 A1AO0 C18 C18 C 0 1 Y N N N N N -25.313 24.421 3.465 4.094 1.263 1.293 C18 A1AO0 22 A1AO0 O19 O3 O 0 1 N N N N N N -28.793 20.041 4.658 -0.147 2.706 -2.238 O19 A1AO0 23 A1AO0 O21 O4 O 0 1 N N N N N N -30.178 16.855 9.164 -5.083 0.988 2.100 O21 A1AO0 24 A1AO0 F22 F1 F 0 1 N N N N N N -24.870 19.935 11.582 -0.740 -5.020 0.548 F22 A1AO0 25 A1AO0 C23 C19 C 0 1 Y N N N N N -26.371 23.463 5.864 1.847 2.409 0.138 C23 A1AO0 26 A1AO0 C25 C20 C 0 1 Y N N N N N -24.865 22.149 2.700 4.084 -0.463 -0.427 C25 A1AO0 27 A1AO0 C27 C21 C 0 1 Y N N N N N -24.757 24.887 2.250 5.231 0.662 1.860 C27 A1AO0 28 A1AO0 C29 C22 C 0 1 Y N N N N N -24.345 22.643 1.537 5.182 -1.020 0.153 C29 A1AO0 29 A1AO0 C30 C23 C 0 1 Y N N N N N -24.294 24.010 1.312 5.755 -0.458 1.292 C30 A1AO0 30 A1AO0 H32 H1 H 0 1 N N N N N N -24.982 20.651 5.281 2.420 -0.017 -2.116 H32 A1AO0 31 A1AO0 H31 H2 H 0 1 N N N N N N -26.556 20.578 4.417 1.497 1.484 -2.365 H31 A1AO0 32 A1AO0 H33 H3 H 0 1 N N N N N N -29.693 21.078 9.549 -3.655 -1.177 -0.951 H33 A1AO0 33 A1AO0 H34 H4 H 0 1 N N N N N N -30.415 20.521 8.001 -3.495 0.494 -1.542 H34 A1AO0 34 A1AO0 H36 H5 H 0 1 N N N N N N -29.739 18.874 10.284 -2.788 0.447 1.191 H36 A1AO0 35 A1AO0 H37 H6 H 0 1 N N N N N N -27.337 20.023 10.807 -2.363 -3.058 0.082 H37 A1AO0 36 A1AO0 H39 H7 H 0 1 N N N N N N -23.238 20.336 9.608 1.709 -4.301 0.021 H39 A1AO0 37 A1AO0 H41 H8 H 0 1 N N N N N N -26.674 25.518 6.371 1.988 3.864 1.705 H41 A1AO0 38 A1AO0 H43 H9 H 0 1 N N N N N N -25.749 26.373 4.293 3.958 2.867 2.734 H43 A1AO0 39 A1AO0 H46 H10 H 0 1 N N N N N N -30.540 14.800 9.049 -7.041 0.291 2.277 H46 A1AO0 40 A1AO0 H45 H11 H 0 1 N N N N N N -31.378 15.803 7.816 -6.594 1.595 3.403 H45 A1AO0 41 A1AO0 H47 H12 H 0 1 N N N N N N -29.612 15.499 7.679 -6.880 1.962 1.685 H47 A1AO0 42 A1AO0 H35 H13 H 0 1 N N N N N N -23.936 20.723 7.254 2.409 -2.098 -0.801 H35 A1AO0 43 A1AO0 H38 H14 H 0 1 N N N N N N -29.484 20.095 4.008 -0.398 3.619 -2.433 H38 A1AO0 44 A1AO0 H40 H15 H 0 1 N N N N N N -26.791 23.111 6.795 0.969 2.864 -0.296 H40 A1AO0 45 A1AO0 H42 H16 H 0 1 N N N N N N -24.899 21.081 2.855 3.648 -0.912 -1.307 H42 A1AO0 46 A1AO0 H44 H17 H 0 1 N N N N N N -24.698 25.949 2.063 5.686 1.087 2.743 H44 A1AO0 47 A1AO0 H48 H18 H 0 1 N N N N N N -23.970 21.963 0.787 5.621 -1.906 -0.281 H48 A1AO0 48 A1AO0 H49 H19 H 0 1 N N N N N N -23.884 24.385 0.386 6.629 -0.917 1.730 H49 A1AO0 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AO0 N1 C5 SING Y N 1 A1AO0 N1 C6 SING N N 2 A1AO0 N1 C3 SING Y N 3 A1AO0 C2 C4 SING Y N 4 A1AO0 C2 C8 SING N N 5 A1AO0 C2 C3 DOUB Y N 6 A1AO0 C3 C7 SING N N 7 A1AO0 C4 C5 DOUB Y N 8 A1AO0 C4 C13 SING Y N 9 A1AO0 C5 C11 SING Y N 10 A1AO0 C6 C9 SING N N 11 A1AO0 C7 O19 SING N N 12 A1AO0 C7 O16 DOUB N N 13 A1AO0 C8 N12 SING N N 14 A1AO0 C9 C23 DOUB Y N 15 A1AO0 C9 C14 SING Y N 16 A1AO0 C10 N12 SING N N 17 A1AO0 C10 O21 SING N N 18 A1AO0 C10 O15 DOUB N N 19 A1AO0 C11 C20 DOUB Y N 20 A1AO0 C13 C17 DOUB Y N 21 A1AO0 C14 C18 DOUB Y N 22 A1AO0 C14 C25 SING Y N 23 A1AO0 C17 F22 SING N N 24 A1AO0 C17 C20 SING Y N 25 A1AO0 C18 C26 SING Y N 26 A1AO0 C18 C27 SING Y N 27 A1AO0 O21 C28 SING N N 28 A1AO0 C23 C24 SING Y N 29 A1AO0 C24 C26 DOUB Y N 30 A1AO0 C25 C29 DOUB Y N 31 A1AO0 C27 C30 DOUB Y N 32 A1AO0 C29 C30 SING Y N 33 A1AO0 C6 H32 SING N N 34 A1AO0 C6 H31 SING N N 35 A1AO0 C8 H33 SING N N 36 A1AO0 C8 H34 SING N N 37 A1AO0 N12 H36 SING N N 38 A1AO0 C13 H37 SING N N 39 A1AO0 C20 H39 SING N N 40 A1AO0 C24 H41 SING N N 41 A1AO0 C26 H43 SING N N 42 A1AO0 C28 H46 SING N N 43 A1AO0 C28 H45 SING N N 44 A1AO0 C28 H47 SING N N 45 A1AO0 C11 H35 SING N N 46 A1AO0 O19 H38 SING N N 47 A1AO0 C23 H40 SING N N 48 A1AO0 C25 H42 SING N N 49 A1AO0 C27 H44 SING N N 50 A1AO0 C29 H48 SING N N 51 A1AO0 C30 H49 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AO0 SMILES ACDLabs 12.01 "O=C(OC)NCc1c2cc(F)ccc2n(Cc2cccc3ccccc32)c1C(=O)O" A1AO0 InChI InChI 1.06 "InChI=1S/C23H19FN2O4/c1-30-23(29)25-12-19-18-11-16(24)9-10-20(18)26(21(19)22(27)28)13-15-7-4-6-14-5-2-3-8-17(14)15/h2-11H,12-13H2,1H3,(H,25,29)(H,27,28)" A1AO0 InChIKey InChI 1.06 JOPBFPYCHOQJEN-UHFFFAOYSA-N A1AO0 SMILES_CANONICAL CACTVS 3.385 "COC(=O)NCc1c2cc(F)ccc2n(Cc3cccc4ccccc34)c1C(O)=O" A1AO0 SMILES CACTVS 3.385 "COC(=O)NCc1c2cc(F)ccc2n(Cc3cccc4ccccc34)c1C(O)=O" A1AO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)NCc1c2cc(ccc2n(c1C(=O)O)Cc3cccc4c3cccc4)F" A1AO0 SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)NCc1c2cc(ccc2n(c1C(=O)O)Cc3cccc4c3cccc4)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AO0 "SYSTEMATIC NAME" ACDLabs 12.01 "5-fluoro-3-{[(methoxycarbonyl)amino]methyl}-1-[(naphthalen-1-yl)methyl]-1H-indole-2-carboxylic acid" A1AO0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-fluoranyl-3-[(methoxycarbonylamino)methyl]-1-(naphthalen-1-ylmethyl)indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AO0 "Create component" 2024-04-19 RCSB A1AO0 "Initial release" 2025-03-05 RCSB #