data_A1AOT # _chem_comp.id A1AOT _chem_comp.name "3-{[(ethoxycarbonyl)(methyl)amino]methyl}-5-fluoro-1-[(naphthalen-1-yl)methyl]-1H-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 F N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-19 _chem_comp.pdbx_modified_date 2025-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.460 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AOT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H60 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AOT N1 N1 N 0 1 Y N N N N N -26.775 20.598 6.509 -0.725 0.965 -0.966 N1 A1AOT 1 A1AOT C4 C1 C 0 1 Y N N N N N -27.140 20.059 8.687 1.437 1.498 -0.683 C4 A1AOT 2 A1AOT C5 C2 C 0 1 Y N N N N N -26.161 20.436 7.753 0.115 1.903 -0.412 C5 A1AOT 3 A1AOT C6 C3 C 0 1 N N N N N N -26.082 21.013 5.280 -2.189 0.999 -0.924 C6 A1AOT 4 A1AOT C7 C4 C 0 1 N N N N N N -29.725 19.624 8.611 2.521 -0.518 -1.927 C7 A1AOT 5 A1AOT C8 C5 C 0 1 N N N N N N -29.950 17.745 10.163 3.845 -1.169 0.012 C8 A1AOT 6 A1AOT C13 C6 C 0 1 Y N N N N N -26.767 19.843 10.014 2.508 2.279 -0.230 C13 A1AOT 7 A1AOT C17 C7 C 0 1 Y N N N N N -25.436 20.003 10.342 2.264 3.426 0.471 C17 A1AOT 8 A1AOT C21 C8 C 0 1 Y N N N N N -24.461 20.374 9.436 0.959 3.827 0.739 C21 A1AOT 9 A1AOT C24 C9 C 0 1 N N N N N N -30.107 17.338 7.732 2.316 -2.831 -0.904 C24 A1AOT 10 A1AOT C26 C10 C 0 1 Y N N N N N -25.019 22.243 2.769 -5.002 0.495 -0.468 C26 A1AOT 11 A1AOT C28 C11 C 0 1 Y N N N N N -25.005 25.007 2.434 -5.871 -1.063 1.683 C28 A1AOT 12 A1AOT C2 C12 C 0 1 Y N N N N N -28.395 19.975 7.984 1.357 0.290 -1.416 C2 A1AOT 13 A1AOT C3 C13 C 0 1 Y N N N N N -28.140 20.326 6.675 0.040 -0.012 -1.574 C3 A1AOT 14 A1AOT C9 C14 C 0 1 N N N N N N -29.087 20.351 5.545 -0.484 -1.190 -2.278 C9 A1AOT 15 A1AOT N10 N2 N 0 1 N N N N N N -29.930 18.207 8.889 2.921 -1.496 -0.913 N10 A1AOT 16 A1AOT C11 C15 C 0 1 Y N N N N N -26.048 22.511 5.048 -2.678 0.162 0.229 C11 A1AOT 17 A1AOT C12 C16 C 0 1 Y N N N N N -24.829 20.597 8.119 -0.109 3.076 0.304 C12 A1AOT 18 A1AOT C14 C17 C 0 1 Y N N N N N -25.527 23.052 3.825 -4.054 -0.056 0.411 C14 A1AOT 19 A1AOT O15 O1 O 0 1 N N N N N N -29.809 18.444 11.135 4.346 -0.062 0.005 O15 A1AOT 20 A1AOT O16 O2 O 0 1 N N N N N N -28.781 19.716 4.530 0.282 -1.990 -2.779 O16 A1AOT 21 A1AOT C18 C18 C 0 1 Y N N N N N -25.508 24.471 3.647 -4.495 -0.846 1.502 C18 A1AOT 22 A1AOT O19 O3 O 0 1 N N N N N N -30.154 16.417 10.212 4.212 -2.068 0.945 O19 A1AOT 23 A1AOT O20 O4 O 0 1 N N N N N N -30.225 20.956 5.700 -1.816 -1.383 -2.369 O20 A1AOT 24 A1AOT F22 F1 F 0 1 N N N N N N -25.066 19.773 11.633 3.299 4.177 0.907 F22 A1AOT 25 A1AOT C23 C19 C 0 1 Y N N N N N -26.509 23.381 6.017 -1.789 -0.387 1.102 C23 A1AOT 26 A1AOT C25 C20 C 0 1 Y N N N N N -26.494 24.759 5.833 -2.222 -1.164 2.174 C25 A1AOT 27 A1AOT C27 C21 C 0 1 Y N N N N N -26.012 25.300 4.679 -3.547 -1.396 2.381 C27 A1AOT 28 A1AOT C29 C22 C 0 1 N N N N N N -30.190 15.836 11.563 5.212 -1.647 1.909 C29 A1AOT 29 A1AOT C30 C23 C 0 1 N N N N N N -30.783 14.508 11.509 5.498 -2.793 2.881 C30 A1AOT 30 A1AOT C31 C24 C 0 1 Y N N N N N -24.526 22.804 1.622 -6.328 0.267 -0.258 C31 A1AOT 31 A1AOT C32 C25 C 0 1 Y N N N N N -24.529 24.188 1.451 -6.761 -0.505 0.817 C32 A1AOT 32 A1AOT H1 H1 H 0 1 N N N N N N -26.591 20.545 4.425 -2.524 2.028 -0.795 H1 A1AOT 33 A1AOT H2 H2 H 0 1 N N N N N N -25.045 20.651 5.332 -2.588 0.601 -1.857 H2 A1AOT 34 A1AOT H3 H3 H 0 1 N N N N N N -29.808 20.172 9.561 2.230 -1.039 -2.839 H3 A1AOT 35 A1AOT H4 H4 H 0 1 N N N N N N -30.521 19.954 7.927 3.359 0.147 -2.141 H4 A1AOT 36 A1AOT H5 H5 H 0 1 N N N N N N -27.495 19.560 10.760 3.524 1.974 -0.434 H5 A1AOT 37 A1AOT H6 H6 H 0 1 N N N N N N -23.433 20.488 9.748 0.783 4.736 1.295 H6 A1AOT 38 A1AOT H7 H7 H 0 1 N N N N N N -30.252 16.301 8.070 2.909 -3.503 -1.523 H7 A1AOT 39 A1AOT H8 H8 H 0 1 N N N N N N -30.989 17.664 7.160 2.286 -3.209 0.118 H8 A1AOT 40 A1AOT H9 H9 H 0 1 N N N N N N -29.214 17.393 7.092 1.301 -2.772 -1.299 H9 A1AOT 41 A1AOT H10 H10 H 0 1 N N N N N N -25.023 21.168 2.875 -4.681 1.099 -1.304 H10 A1AOT 42 A1AOT H11 H11 H 0 1 N N N N N N -24.998 26.077 2.286 -6.222 -1.663 2.510 H11 A1AOT 43 A1AOT H12 H12 H 0 1 N N N N N N -24.092 20.892 7.387 -1.118 3.396 0.516 H12 A1AOT 44 A1AOT H13 H13 H 0 1 N N N N N N -30.760 20.829 4.925 -2.114 -2.172 -2.842 H13 A1AOT 45 A1AOT H14 H14 H 0 1 N N N N N N -26.892 22.979 6.944 -0.732 -0.218 0.960 H14 A1AOT 46 A1AOT H15 H15 H 0 1 N N N N N N -26.868 25.407 6.612 -1.496 -1.588 2.851 H15 A1AOT 47 A1AOT H16 H16 H 0 1 N N N N N N -26.014 26.372 4.550 -3.868 -2.000 3.217 H16 A1AOT 48 A1AOT H17 H17 H 0 1 N N N N N N -29.166 15.764 11.958 6.129 -1.376 1.387 H17 A1AOT 49 A1AOT H18 H18 H 0 1 N N N N N N -30.792 16.479 12.222 4.841 -0.785 2.464 H18 A1AOT 50 A1AOT H19 H19 H 0 1 N N N N N N -30.809 14.076 12.520 4.581 -3.064 3.404 H19 A1AOT 51 A1AOT H20 H20 H 0 1 N N N N N N -31.807 14.580 11.115 5.868 -3.656 2.327 H20 A1AOT 52 A1AOT H21 H21 H 0 1 N N N N N N -30.181 13.864 10.851 6.249 -2.477 3.605 H21 A1AOT 53 A1AOT H22 H22 H 0 1 N N N N N N -24.131 22.169 0.843 -7.054 0.692 -0.935 H22 A1AOT 54 A1AOT H23 H23 H 0 1 N N N N N N -24.152 24.615 0.534 -7.819 -0.670 0.961 H23 A1AOT 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AOT C32 C31 DOUB Y N 1 A1AOT C32 C28 SING Y N 2 A1AOT C31 C26 SING Y N 3 A1AOT C28 C18 DOUB Y N 4 A1AOT C26 C14 DOUB Y N 5 A1AOT C18 C14 SING Y N 6 A1AOT C18 C27 SING Y N 7 A1AOT C14 C11 SING Y N 8 A1AOT O16 C9 DOUB N N 9 A1AOT C27 C25 DOUB Y N 10 A1AOT C11 C6 SING N N 11 A1AOT C11 C23 DOUB Y N 12 A1AOT C6 N1 SING N N 13 A1AOT C9 O20 SING N N 14 A1AOT C9 C3 SING N N 15 A1AOT C25 C23 SING Y N 16 A1AOT N1 C3 SING Y N 17 A1AOT N1 C5 SING Y N 18 A1AOT C3 C2 DOUB Y N 19 A1AOT C24 N10 SING N N 20 A1AOT C5 C12 DOUB Y N 21 A1AOT C5 C4 SING Y N 22 A1AOT C2 C7 SING N N 23 A1AOT C2 C4 SING Y N 24 A1AOT C12 C21 SING Y N 25 A1AOT C7 N10 SING N N 26 A1AOT C4 C13 DOUB Y N 27 A1AOT N10 C8 SING N N 28 A1AOT C21 C17 DOUB Y N 29 A1AOT C13 C17 SING Y N 30 A1AOT C8 O19 SING N N 31 A1AOT C8 O15 DOUB N N 32 A1AOT O19 C29 SING N N 33 A1AOT C17 F22 SING N N 34 A1AOT C30 C29 SING N N 35 A1AOT C6 H1 SING N N 36 A1AOT C6 H2 SING N N 37 A1AOT C7 H3 SING N N 38 A1AOT C7 H4 SING N N 39 A1AOT C13 H5 SING N N 40 A1AOT C21 H6 SING N N 41 A1AOT C24 H7 SING N N 42 A1AOT C24 H8 SING N N 43 A1AOT C24 H9 SING N N 44 A1AOT C26 H10 SING N N 45 A1AOT C28 H11 SING N N 46 A1AOT C12 H12 SING N N 47 A1AOT O20 H13 SING N N 48 A1AOT C23 H14 SING N N 49 A1AOT C25 H15 SING N N 50 A1AOT C27 H16 SING N N 51 A1AOT C29 H17 SING N N 52 A1AOT C29 H18 SING N N 53 A1AOT C30 H19 SING N N 54 A1AOT C30 H20 SING N N 55 A1AOT C30 H21 SING N N 56 A1AOT C31 H22 SING N N 57 A1AOT C32 H23 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AOT SMILES ACDLabs 12.01 "O=C(OCC)N(C)Cc1c2cc(F)ccc2n(Cc2cccc3ccccc32)c1C(=O)O" A1AOT InChI InChI 1.06 "InChI=1S/C25H23FN2O4/c1-3-32-25(31)27(2)15-21-20-13-18(26)11-12-22(20)28(23(21)24(29)30)14-17-9-6-8-16-7-4-5-10-19(16)17/h4-13H,3,14-15H2,1-2H3,(H,29,30)" A1AOT InChIKey InChI 1.06 XWRQNSCQHBELPO-UHFFFAOYSA-N A1AOT SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)N(C)Cc1c2cc(F)ccc2n(Cc3cccc4ccccc34)c1C(O)=O" A1AOT SMILES CACTVS 3.385 "CCOC(=O)N(C)Cc1c2cc(F)ccc2n(Cc3cccc4ccccc34)c1C(O)=O" A1AOT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)N(C)Cc1c2cc(ccc2n(c1C(=O)O)Cc3cccc4c3cccc4)F" A1AOT SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)N(C)Cc1c2cc(ccc2n(c1C(=O)O)Cc3cccc4c3cccc4)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AOT "SYSTEMATIC NAME" ACDLabs 12.01 "3-{[(ethoxycarbonyl)(methyl)amino]methyl}-5-fluoro-1-[(naphthalen-1-yl)methyl]-1H-indole-2-carboxylic acid" A1AOT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[ethoxycarbonyl(methyl)amino]methyl]-5-fluoranyl-1-(naphthalen-1-ylmethyl)indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AOT "Create component" 2024-04-19 RCSB A1AOT "Initial release" 2025-03-05 RCSB #