data_A1AP1 # _chem_comp.id A1AP1 _chem_comp.name O-phosphono-D-tyrosine _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H12 N O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.168 _chem_comp.one_letter_code W _chem_comp.three_letter_code A1AP1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BJN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AP1 N N1 N 0 1 N N N Y Y N -20.148 8.645 8.805 -3.419 1.470 0.756 N A1AP1 1 A1AP1 CA C1 C 0 1 N N R N Y N -20.292 10.072 9.034 -3.558 0.055 0.388 CA A1AP1 2 A1AP1 C C2 C 0 1 N N N N Y Y -21.633 10.544 8.486 -4.975 -0.214 -0.048 C A1AP1 3 A1AP1 O O1 O 0 1 N N N N Y Y -21.677 11.196 7.412 -5.682 0.700 -0.399 O A1AP1 4 A1AP1 CB C3 C 0 1 N N N N N N -20.159 10.361 10.525 -2.600 -0.270 -0.760 CB A1AP1 5 A1AP1 CG C4 C 0 1 Y N N N N N -19.582 11.742 10.831 -1.178 -0.119 -0.286 CG A1AP1 6 A1AP1 CD1 C5 C 0 1 Y N N N N N -20.193 12.560 11.761 -0.515 -1.200 0.265 CD1 A1AP1 7 A1AP1 CE1 C6 C 0 1 Y N N N N N -19.670 13.811 12.040 0.789 -1.064 0.700 CE1 A1AP1 8 A1AP1 CZ C7 C 0 1 Y N N N N N -18.535 14.247 11.384 1.434 0.159 0.583 CZ A1AP1 9 A1AP1 CE2 C8 C 0 1 Y N N N N N -17.925 13.426 10.456 0.767 1.242 0.030 CE2 A1AP1 10 A1AP1 CD2 C9 C 0 1 Y N N N N N -18.447 12.177 10.179 -0.535 1.100 -0.409 CD2 A1AP1 11 A1AP1 OH O2 O 0 1 N N N N N N -17.986 15.504 11.657 2.716 0.296 1.011 OH A1AP1 12 A1AP1 OP3 O3 O 0 1 N N N N N N -18.213 18.046 11.292 3.734 -1.576 -0.530 OP3 A1AP1 13 A1AP1 OP1 O4 O 0 1 N N N N N N -20.207 16.639 10.978 3.565 0.820 -1.308 OP1 A1AP1 14 A1AP1 OP2 O5 O 0 1 N N N N N N -19.301 17.027 13.244 5.288 0.298 0.463 OP2 A1AP1 15 A1AP1 P P1 P 0 1 N N N N N N -18.952 16.829 11.792 3.820 -0.022 -0.117 P A1AP1 16 A1AP1 H1 H1 H 0 1 N N N Y Y N -19.268 8.336 9.165 -3.636 2.070 -0.026 H1 A1AP1 17 A1AP1 H2 H2 H 0 1 N Y N Y Y N -20.887 8.157 9.269 -3.994 1.694 1.554 H2 A1AP1 18 A1AP1 HA H4 H 0 1 N N N N Y N -19.492 10.609 8.504 -3.317 -0.569 1.249 HA A1AP1 19 A1AP1 HB2 H6 H 0 1 N N N N N N -21.157 10.292 10.983 -2.766 -1.295 -1.092 HB2 A1AP1 20 A1AP1 HB3 H7 H 0 1 N N N N N N -19.498 9.602 10.969 -2.782 0.414 -1.589 HB3 A1AP1 21 A1AP1 HD1 H8 H 0 1 N N N N N N -21.082 12.222 12.273 -1.018 -2.151 0.356 HD1 A1AP1 22 A1AP1 HE1 H9 H 0 1 N N N N N N -20.149 14.446 12.770 1.306 -1.908 1.131 HE1 A1AP1 23 A1AP1 HE2 H10 H 0 1 N N N N N N -17.035 13.762 9.944 1.267 2.195 -0.062 HE2 A1AP1 24 A1AP1 HD2 H11 H 0 1 N N N N N N -17.966 11.541 9.451 -1.055 1.942 -0.840 HD2 A1AP1 25 A1AP1 H12 H12 H 0 1 N N N N N N -18.694 18.435 10.571 3.891 -2.187 0.203 H12 A1AP1 26 A1AP1 H13 H13 H 0 1 N N N N N N -20.244 16.992 13.351 6.004 0.129 -0.165 H13 A1AP1 27 A1AP1 OXT OXT O 0 1 N Y N N Y Y ? ? ? -5.451 -1.469 -0.045 OXT A1AP1 28 A1AP1 H3 H3 H 0 1 N Y N N Y Y ? ? ? -6.366 -1.592 -0.333 H3 A1AP1 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AP1 O C DOUB N N 1 A1AP1 C CA SING N N 2 A1AP1 N CA SING N N 3 A1AP1 CA CB SING N N 4 A1AP1 CD2 CE2 DOUB Y N 5 A1AP1 CD2 CG SING Y N 6 A1AP1 CE2 CZ SING Y N 7 A1AP1 CB CG SING N N 8 A1AP1 CG CD1 DOUB Y N 9 A1AP1 OP1 P DOUB N N 10 A1AP1 OP3 P SING N N 11 A1AP1 CZ OH SING N N 12 A1AP1 CZ CE1 DOUB Y N 13 A1AP1 OH P SING N N 14 A1AP1 CD1 CE1 SING Y N 15 A1AP1 P OP2 SING N N 16 A1AP1 N H1 SING N N 17 A1AP1 N H2 SING N N 18 A1AP1 CA HA SING N N 19 A1AP1 CB HB2 SING N N 20 A1AP1 CB HB3 SING N N 21 A1AP1 CD1 HD1 SING N N 22 A1AP1 CE1 HE1 SING N N 23 A1AP1 CE2 HE2 SING N N 24 A1AP1 CD2 HD2 SING N N 25 A1AP1 OP3 H12 SING N N 26 A1AP1 OP2 H13 SING N N 27 A1AP1 C OXT SING N N 28 A1AP1 OXT H3 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AP1 SMILES ACDLabs 12.01 "OP(=O)(O)Oc1ccc(cc1)CC(N)C(=O)O" A1AP1 InChI InChI 1.06 "InChI=1S/C9H12NO6P/c10-8(9(11)12)5-6-1-3-7(4-2-6)16-17(13,14)15/h1-4,8H,5,10H2,(H,11,12)(H2,13,14,15)/t8-/m1/s1" A1AP1 InChIKey InChI 1.06 DCWXELXMIBXGTH-MRVPVSSYSA-N A1AP1 SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccc(O[P](O)(O)=O)cc1)C(O)=O" A1AP1 SMILES CACTVS 3.385 "N[CH](Cc1ccc(O[P](O)(O)=O)cc1)C(O)=O" A1AP1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[C@H](C(=O)O)N)OP(=O)(O)O" A1AP1 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)O)N)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AP1 "SYSTEMATIC NAME" ACDLabs 12.01 O-phosphono-D-tyrosine A1AP1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-azanyl-3-(4-phosphonooxyphenyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AP1 "Create component" 2024-04-26 RCSB A1AP1 "Modify identifier" 2024-04-29 RCSB A1AP1 "Modify parent residue" 2024-04-29 RCSB A1AP1 "Initial release" 2024-09-18 RCSB A1AP1 "Modify backbone" 2024-09-25 PDBE A1AP1 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AP1 _pdbx_chem_comp_pcm.modified_residue_id DTY _pdbx_chem_comp_pcm.type Phosphorylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.first_instance_model_db_code 9BJN #