data_A1AP4 # _chem_comp.id A1AP4 _chem_comp.name "(3S)-3-(cyclohexylmethyl)piperazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H20 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-29 _chem_comp.pdbx_modified_date 2024-05-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 196.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AP4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7H70 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AP4 N1 N1 N 0 1 N N N N N N 17.720 0.898 17.595 -1.278 -1.191 0.462 N1 A1AP4 1 A1AP4 C4 C1 C 0 1 N N N N N N 16.126 -1.005 17.751 0.086 0.841 0.431 C4 A1AP4 2 A1AP4 C5 C2 C 0 1 N N N N N N 16.853 -1.533 18.985 1.388 0.042 0.341 C5 A1AP4 3 A1AP4 C6 C3 C 0 1 N N N N N N 15.935 -1.653 20.195 1.827 -0.053 -1.121 C6 A1AP4 4 A1AP4 C7 C4 C 0 1 N N N N N N 16.687 -2.144 21.428 3.129 -0.852 -1.211 C7 A1AP4 5 A1AP4 C8 C5 C 0 1 N N N N N N 17.388 -3.470 21.163 4.217 -0.149 -0.397 C8 A1AP4 6 A1AP4 C10 C6 C 0 1 N N N N N N 17.486 -2.887 18.719 2.476 0.746 1.156 C10 A1AP4 7 A1AP4 N N2 N 0 1 N N N N N N 16.366 1.555 15.283 -3.495 0.396 0.002 N A1AP4 8 A1AP4 C C7 C 0 1 N N N N N N 15.638 0.903 16.190 -2.286 0.900 -0.269 C A1AP4 9 A1AP4 O O1 O 0 1 N N N N N N 14.450 0.638 16.009 -2.195 2.080 -0.534 O A1AP4 10 A1AP4 C1 C8 C 0 1 N N N N N N 17.798 1.782 15.338 -3.709 -1.001 0.366 C1 A1AP4 11 A1AP4 C2 C9 C 0 1 N N N N N N 18.417 0.823 16.306 -2.498 -1.841 -0.044 C2 A1AP4 12 A1AP4 C3 C10 C 0 1 N N R N N N 16.304 0.494 17.491 -1.037 0.066 -0.260 C3 A1AP4 13 A1AP4 C9 C11 C 0 1 N N N N N N 18.269 -3.391 19.927 3.777 -0.053 1.065 C9 A1AP4 14 A1AP4 H5 H1 H 0 1 N N N N N N 18.180 0.293 18.245 -1.340 -1.030 1.457 H5 A1AP4 15 A1AP4 H8 H3 H 0 1 N N N N N N 15.052 -1.205 17.875 -0.172 0.998 1.479 H8 A1AP4 16 A1AP4 H7 H4 H 0 1 N N N N N N 16.502 -1.551 16.873 0.217 1.806 -0.059 H7 A1AP4 17 A1AP4 H9 H5 H 0 1 N N N N N N 17.656 -0.824 19.236 1.227 -0.960 0.739 H9 A1AP4 18 A1AP4 H10 H6 H 0 1 N N N N N N 15.501 -0.666 20.412 1.052 -0.555 -1.701 H10 A1AP4 19 A1AP4 H11 H7 H 0 1 N N N N N N 15.129 -2.365 19.962 1.988 0.949 -1.519 H11 A1AP4 20 A1AP4 H12 H8 H 0 1 N N N N N N 17.439 -1.393 21.711 2.968 -1.855 -0.814 H12 A1AP4 21 A1AP4 H13 H9 H 0 1 N N N N N N 15.972 -2.276 22.254 3.442 -0.921 -2.253 H13 A1AP4 22 A1AP4 H14 H10 H 0 1 N N N N N N 18.012 -3.726 22.032 5.144 -0.718 -0.461 H14 A1AP4 23 A1AP4 H15 H11 H 0 1 N N N N N N 16.630 -4.253 21.013 4.377 0.853 -0.795 H15 A1AP4 24 A1AP4 H18 H12 H 0 1 N N N N N N 18.170 -2.798 17.862 2.636 1.748 0.758 H18 A1AP4 25 A1AP4 H19 H13 H 0 1 N N N N N N 16.693 -3.611 18.481 2.163 0.814 2.197 H19 A1AP4 26 A1AP4 H H14 H 0 1 N N N N N N 15.879 1.922 14.490 -4.264 0.986 -0.046 H A1AP4 27 A1AP4 H2 H15 H 0 1 N N N N N N 18.233 1.627 14.339 -3.852 -1.076 1.444 H2 A1AP4 28 A1AP4 H1 H16 H 0 1 N N N N N N 17.994 2.813 15.667 -4.598 -1.375 -0.142 H1 A1AP4 29 A1AP4 H4 H17 H 0 1 N N N N N N 18.339 -0.199 15.908 -2.451 -1.909 -1.131 H4 A1AP4 30 A1AP4 H3 H18 H 0 1 N N N N N N 19.477 1.081 16.448 -2.584 -2.840 0.384 H3 A1AP4 31 A1AP4 H6 H19 H 0 1 N N N N N N 15.762 1.014 18.295 -0.745 -0.157 -1.286 H6 A1AP4 32 A1AP4 H16 H20 H 0 1 N N N N N N 19.104 -2.703 20.125 3.617 -1.055 1.463 H16 A1AP4 33 A1AP4 H17 H21 H 0 1 N N N N N N 18.665 -4.393 19.705 4.552 0.448 1.645 H17 A1AP4 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AP4 C O DOUB N N 1 A1AP4 C N SING N N 2 A1AP4 N C1 SING N N 3 A1AP4 C1 C2 SING N N 4 A1AP4 C2 N1 SING N N 5 A1AP4 N1 C3 SING N N 6 A1AP4 C3 C SING N N 7 A1AP4 C4 C3 SING N N 8 A1AP4 C5 C4 SING N N 9 A1AP4 C5 C6 SING N N 10 A1AP4 C6 C7 SING N N 11 A1AP4 C7 C8 SING N N 12 A1AP4 C8 C9 SING N N 13 A1AP4 C9 C10 SING N N 14 A1AP4 C10 C5 SING N N 15 A1AP4 N1 H5 SING N N 16 A1AP4 C4 H8 SING N N 17 A1AP4 C4 H7 SING N N 18 A1AP4 C5 H9 SING N N 19 A1AP4 C6 H10 SING N N 20 A1AP4 C6 H11 SING N N 21 A1AP4 C7 H12 SING N N 22 A1AP4 C7 H13 SING N N 23 A1AP4 C8 H14 SING N N 24 A1AP4 C8 H15 SING N N 25 A1AP4 C10 H18 SING N N 26 A1AP4 C10 H19 SING N N 27 A1AP4 N H SING N N 28 A1AP4 C1 H2 SING N N 29 A1AP4 C1 H1 SING N N 30 A1AP4 C2 H4 SING N N 31 A1AP4 C2 H3 SING N N 32 A1AP4 C3 H6 SING N N 33 A1AP4 C9 H16 SING N N 34 A1AP4 C9 H17 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AP4 SMILES ACDLabs 12.01 O=C1NCCNC1CC1CCCCC1 A1AP4 InChI InChI 1.06 "InChI=1S/C11H20N2O/c14-11-10(12-6-7-13-11)8-9-4-2-1-3-5-9/h9-10,12H,1-8H2,(H,13,14)/t10-/m1/s1" A1AP4 InChIKey InChI 1.06 MWAZDIXAEWBVMS-SNVBAGLBSA-N A1AP4 SMILES_CANONICAL CACTVS 3.385 "O=C1NCCN[C@@H]1CC2CCCCC2" A1AP4 SMILES CACTVS 3.385 "O=C1NCCN[CH]1CC2CCCCC2" A1AP4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)C[C@@H]2C(=O)NCCN2" A1AP4 SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)CC2C(=O)NCCN2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AP4 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-(cyclohexylmethyl)piperazin-2-one" A1AP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-3-(cyclohexylmethyl)piperazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AP4 "Create component" 2024-04-29 RCSB A1AP4 "Initial release" 2024-05-29 RCSB #