data_A1APG
#
_chem_comp.id A1APG
_chem_comp.name "6-{1-[([1,1'-biphenyl]-4-yl)carbamoyl]azetidin-3-yl}-3-[(1-methyl-1H-pyrazol-4-yl)amino]pyrazine-2-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H24 N8 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-04-22
_chem_comp.pdbx_modified_date 2024-10-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 468.510
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1APG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BHJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1APG N1 N1 N 0 1 N N N N N N -37.217 -10.297 -6.820 6.461 0.130 -0.262 N1 A1APG 1
A1APG N3 N2 N 0 1 Y N N N N N -39.224 -10.737 -3.774 3.469 2.114 0.233 N3 A1APG 2
A1APG C4 C1 C 0 1 Y N N N N N -37.918 -12.649 -4.241 2.953 -0.176 0.258 C4 A1APG 3
A1APG C5 C2 C 0 1 Y N N N N N -38.771 -11.938 -3.392 2.571 1.156 0.345 C5 A1APG 4
A1APG C6 C3 C 0 1 Y N N N N N -38.789 -10.221 -4.931 4.747 1.808 0.034 C6 A1APG 5
A1APG C7 C4 C 0 1 N N N N N N -39.270 -8.826 -5.261 5.756 2.880 -0.092 C7 A1APG 6
A1APG C8 C5 C 0 1 N N N N N N -39.133 -12.431 -2.015 1.123 1.508 0.571 C8 A1APG 7
A1APG C10 C6 C 0 1 N N N N N N -40.605 -12.900 -1.883 0.383 0.523 1.494 C10 A1APG 8
A1APG C13 C7 C 0 1 Y N N N N N -44.212 -11.686 1.848 -4.669 -0.703 0.396 C13 A1APG 9
A1APG C15 C8 C 0 1 Y N N N N N -46.107 -12.950 2.668 -6.925 -0.223 -0.270 C15 A1APG 10
A1APG C17 C9 C 0 1 Y N N N N N -44.455 -13.987 1.234 -5.119 1.106 -1.128 C17 A1APG 11
A1APG C20 C10 C 0 1 Y N N N N N -48.974 -14.385 4.685 -10.632 -0.053 -0.868 C20 A1APG 12
A1APG C21 C11 C 0 1 Y N N N N N -49.630 -13.249 5.089 -11.081 -1.100 -0.083 C21 A1APG 13
A1APG C22 C12 C 0 1 Y N N N N N -49.139 -12.015 4.730 -10.183 -1.859 0.646 C22 A1APG 14
A1APG C24 C13 C 0 1 Y N N N N N -35.497 -10.038 -8.514 6.028 -2.325 -0.024 C24 A1APG 15
A1APG N N3 N 0 1 Y N N N N N -34.839 -12.055 -8.793 8.086 -3.034 -0.322 N A1APG 16
A1APG C C14 C 0 1 N N N N N N -34.017 -13.144 -9.309 9.227 -3.943 -0.456 C A1APG 17
A1APG O O1 O 0 1 N N N N N N -38.964 -8.296 -6.344 6.906 2.602 -0.375 O A1APG 18
A1APG C1 C15 C 0 1 Y N N N N N -35.844 -12.135 -7.915 8.125 -1.680 -0.428 C1 A1APG 19
A1APG C11 C16 C 0 1 N N N N N N -41.690 -11.776 0.196 -2.072 0.451 0.628 C11 A1APG 20
A1APG C12 C17 C 0 1 Y N N N N N -43.745 -12.798 1.158 -4.216 0.344 -0.396 C12 A1APG 21
A1APG C14 C18 C 0 1 Y N N N N N -45.381 -11.763 2.585 -6.016 -0.989 0.459 C14 A1APG 22
A1APG C16 C19 C 0 1 Y N N N N N -45.622 -14.057 1.974 -6.468 0.831 -1.060 C16 A1APG 23
A1APG C18 C20 C 0 1 Y N N N N N -47.328 -13.051 3.515 -8.375 -0.529 -0.204 C18 A1APG 24
A1APG C19 C21 C 0 1 Y N N N N N -47.839 -14.294 3.894 -9.284 0.236 -0.932 C19 A1APG 25
A1APG C2 C22 C 0 1 Y N N N N N -36.287 -10.863 -7.705 6.862 -1.219 -0.241 C2 A1APG 26
A1APG C23 C23 C 0 1 Y N N N N N -47.993 -11.912 3.958 -8.833 -1.576 0.593 C23 A1APG 27
A1APG C3 C24 C 0 1 Y N N N N N -37.882 -10.921 -5.756 5.134 0.460 -0.055 C3 A1APG 28
A1APG C9 C25 C 0 1 N N N N N N -39.432 -11.325 -0.970 0.184 1.013 -0.544 C9 A1APG 29
A1APG N2 N4 N 0 1 Y N N N N N -37.486 -12.163 -5.410 4.219 -0.495 0.061 N2 A1APG 30
A1APG N4 N5 N 0 1 N N N N N N -40.049 -8.235 -4.353 5.403 4.165 0.106 N4 A1APG 31
A1APG N5 N6 N 0 1 N N N N N N -40.731 -11.979 -0.743 -0.739 0.630 0.542 N5 A1APG 32
A1APG N6 N7 N 0 1 N N N N N N -42.618 -12.761 0.307 -2.849 0.632 -0.458 N6 A1APG 33
A1APG N7 N8 N 0 1 Y N N N N N -34.608 -10.752 -9.184 6.759 -3.409 -0.073 N7 A1APG 34
A1APG O1 O2 O 0 1 N N N N N N -41.670 -10.779 0.906 -2.574 0.125 1.687 O1 A1APG 35
A1APG H1 H1 H 0 1 N N N N N N -37.431 -9.331 -6.966 7.116 0.829 -0.417 H1 A1APG 36
A1APG H2 H2 H 0 1 N N N N N N -37.593 -13.634 -3.940 2.210 -0.954 0.352 H2 A1APG 37
A1APG H3 H3 H 0 1 N N N N N N -38.425 -13.180 -1.632 0.977 2.554 0.838 H3 A1APG 38
A1APG H4 H4 H 0 1 N N N N N N -41.244 -12.654 -2.744 0.835 -0.468 1.531 H4 A1APG 39
A1APG H5 H5 H 0 1 N N N N N N -40.726 -13.963 -1.629 0.162 0.928 2.481 H5 A1APG 40
A1APG H6 H6 H 0 1 N N N N N N -43.661 -10.758 1.809 -3.964 -1.297 0.961 H6 A1APG 41
A1APG H7 H7 H 0 1 N N N N N N -44.095 -14.862 0.713 -4.765 1.922 -1.740 H7 A1APG 42
A1APG H8 H8 H 0 1 N N N N N N -49.344 -15.354 4.985 -11.338 0.537 -1.434 H8 A1APG 43
A1APG H9 H9 H 0 1 N N N N N N -50.527 -13.324 5.686 -12.136 -1.325 -0.038 H9 A1APG 44
A1APG H10 H10 H 0 1 N N N N N N -49.651 -11.120 5.052 -10.539 -2.675 1.257 H10 A1APG 45
A1APG H11 H11 H 0 1 N N N N N N -35.599 -8.965 -8.582 4.964 -2.289 0.157 H11 A1APG 46
A1APG H12 H12 H 0 1 N N N N N N -33.261 -12.739 -9.998 9.687 -4.095 0.520 H12 A1APG 47
A1APG H13 H13 H 0 1 N N N N N N -33.515 -13.652 -8.473 8.886 -4.900 -0.850 H13 A1APG 48
A1APG H14 H14 H 0 1 N N N N N N -34.655 -13.862 -9.845 9.959 -3.509 -1.138 H14 A1APG 49
A1APG H15 H15 H 0 1 N N N N N N -36.231 -13.035 -7.460 9.001 -1.080 -0.624 H15 A1APG 50
A1APG H16 H16 H 0 1 N N N N N N -45.738 -10.887 3.106 -6.367 -1.806 1.071 H16 A1APG 51
A1APG H17 H17 H 0 1 N N N N N N -46.168 -14.988 2.015 -7.171 1.431 -1.618 H17 A1APG 52
A1APG H18 H18 H 0 1 N N N N N N -47.344 -15.196 3.567 -8.934 1.049 -1.551 H18 A1APG 53
A1APG H19 H19 H 0 1 N N N N N N -47.611 -10.936 3.697 -8.133 -2.172 1.159 H19 A1APG 54
A1APG H20 H20 H 0 1 N N N N N N -38.761 -11.324 -0.099 -0.196 1.809 -1.184 H20 A1APG 55
A1APG H21 H21 H 0 1 N N N N N N -39.497 -10.308 -1.384 0.578 0.165 -1.105 H21 A1APG 56
A1APG H22 H22 H 0 1 N N N N N N -40.417 -7.322 -4.528 4.485 4.386 0.332 H22 A1APG 57
A1APG H23 H23 H 0 1 N N N N N N -40.265 -8.705 -3.497 6.065 4.869 0.024 H23 A1APG 58
A1APG H24 H24 H 0 1 N N N N N N -42.488 -13.556 -0.285 -2.459 0.963 -1.283 H24 A1APG 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1APG C N SING N N 1
A1APG N7 N SING Y N 2
A1APG N7 C24 DOUB Y N 3
A1APG N C1 SING Y N 4
A1APG C24 C2 SING Y N 5
A1APG C1 C2 DOUB Y N 6
A1APG C2 N1 SING N N 7
A1APG N1 C3 SING N N 8
A1APG O C7 DOUB N N 9
A1APG C3 N2 DOUB Y N 10
A1APG C3 C6 SING Y N 11
A1APG N2 C4 SING Y N 12
A1APG C7 C6 SING N N 13
A1APG C7 N4 SING N N 14
A1APG C6 N3 DOUB Y N 15
A1APG C4 C5 DOUB Y N 16
A1APG N3 C5 SING Y N 17
A1APG C5 C8 SING N N 18
A1APG C8 C10 SING N N 19
A1APG C8 C9 SING N N 20
A1APG C10 N5 SING N N 21
A1APG C9 N5 SING N N 22
A1APG N5 C11 SING N N 23
A1APG C11 N6 SING N N 24
A1APG C11 O1 DOUB N N 25
A1APG N6 C12 SING N N 26
A1APG C12 C17 DOUB Y N 27
A1APG C12 C13 SING Y N 28
A1APG C17 C16 SING Y N 29
A1APG C13 C14 DOUB Y N 30
A1APG C16 C15 DOUB Y N 31
A1APG C14 C15 SING Y N 32
A1APG C15 C18 SING N N 33
A1APG C18 C19 DOUB Y N 34
A1APG C18 C23 SING Y N 35
A1APG C19 C20 SING Y N 36
A1APG C23 C22 DOUB Y N 37
A1APG C20 C21 DOUB Y N 38
A1APG C22 C21 SING Y N 39
A1APG N1 H1 SING N N 40
A1APG C4 H2 SING N N 41
A1APG C8 H3 SING N N 42
A1APG C10 H4 SING N N 43
A1APG C10 H5 SING N N 44
A1APG C13 H6 SING N N 45
A1APG C17 H7 SING N N 46
A1APG C20 H8 SING N N 47
A1APG C21 H9 SING N N 48
A1APG C22 H10 SING N N 49
A1APG C24 H11 SING N N 50
A1APG C H12 SING N N 51
A1APG C H13 SING N N 52
A1APG C H14 SING N N 53
A1APG C1 H15 SING N N 54
A1APG C14 H16 SING N N 55
A1APG C16 H17 SING N N 56
A1APG C19 H18 SING N N 57
A1APG C23 H19 SING N N 58
A1APG C9 H20 SING N N 59
A1APG C9 H21 SING N N 60
A1APG N4 H22 SING N N 61
A1APG N4 H23 SING N N 62
A1APG N6 H24 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1APG SMILES ACDLabs 12.01 "Cn1cc(Nc2ncc(nc2C(N)=O)C2CN(C2)C(=O)Nc2ccc(cc2)c2ccccc2)cn1"
A1APG InChI InChI 1.06 "InChI=1S/C25H24N8O2/c1-32-15-20(11-28-32)29-24-22(23(26)34)31-21(12-27-24)18-13-33(14-18)25(35)30-19-9-7-17(8-10-19)16-5-3-2-4-6-16/h2-12,15,18H,13-14H2,1H3,(H2,26,34)(H,27,29)(H,30,35)"
A1APG InChIKey InChI 1.06 YCWQJPOTEMLNJY-UHFFFAOYSA-N
A1APG SMILES_CANONICAL CACTVS 3.385 "Cn1cc(Nc2ncc(nc2C(N)=O)C3CN(C3)C(=O)Nc4ccc(cc4)c5ccccc5)cn1"
A1APG SMILES CACTVS 3.385 "Cn1cc(Nc2ncc(nc2C(N)=O)C3CN(C3)C(=O)Nc4ccc(cc4)c5ccccc5)cn1"
A1APG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)Nc2c(nc(cn2)C3CN(C3)C(=O)Nc4ccc(cc4)c5ccccc5)C(=O)N"
A1APG SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)Nc2c(nc(cn2)C3CN(C3)C(=O)Nc4ccc(cc4)c5ccccc5)C(=O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1APG "SYSTEMATIC NAME" ACDLabs 12.01 "6-{1-[([1,1'-biphenyl]-4-yl)carbamoyl]azetidin-3-yl}-3-[(1-methyl-1H-pyrazol-4-yl)amino]pyrazine-2-carboxamide"
A1APG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(1-methylpyrazol-4-yl)amino]-6-[1-[(4-phenylphenyl)carbamoyl]azetidin-3-yl]pyrazine-2-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1APG "Create component" 2024-04-22 RCSB
A1APG "Initial release" 2024-10-09 RCSB
#