data_A1APZ # _chem_comp.id A1APZ _chem_comp.name "1'-{[5-chloro-1-(4,4,4-trifluorobutyl)-1H-1,3-benzimidazol-2-yl]methyl}-1-(methanesulfonyl)spiro[azetidine-3,3'-indol]-2'(1'H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 Cl F3 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-26 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 526.959 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1APZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BJM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1APZ C1 C1 C 0 1 Y N N N N N 22.180 16.964 23.003 1.633 3.764 2.636 C1 A1APZ 1 A1APZ C10 C2 C 0 1 Y N N N N N 18.136 22.234 21.607 -2.306 -1.661 0.355 C10 A1APZ 2 A1APZ C11 C3 C 0 1 Y N N N N N 21.203 18.626 21.095 1.021 2.094 0.501 C11 A1APZ 3 A1APZ C12 C4 C 0 1 Y N N N N N 17.775 23.799 23.791 -2.325 -4.424 0.586 C12 A1APZ 4 A1APZ C13 C5 C 0 1 Y N N N N N 20.009 21.434 20.721 -0.920 -0.340 -0.745 C13 A1APZ 5 A1APZ C14 C6 C 0 1 N N N N N N 20.203 18.362 19.032 2.146 0.604 -0.803 C14 A1APZ 6 A1APZ C15 C7 C 0 1 N N N N N N 19.207 15.962 19.497 3.963 0.181 0.968 C15 A1APZ 7 A1APZ C16 C8 C 0 1 N N N N N N 21.092 15.944 18.677 4.430 1.718 -0.402 C16 A1APZ 8 A1APZ C17 C9 C 0 1 N N N N N N 20.389 16.942 19.601 3.121 1.187 0.183 C17 A1APZ 9 A1APZ C18 C10 C 0 1 N N N N N N 21.109 13.373 17.462 7.626 -0.129 0.477 C18 A1APZ 10 A1APZ C19 C11 C 0 1 N N N N N N 20.842 20.672 19.761 -0.267 0.894 -1.311 C19 A1APZ 11 A1APZ C2 C12 C 0 1 Y N N N N N 22.291 18.327 23.157 0.346 3.723 2.134 C2 A1APZ 12 A1APZ C20 C13 C 0 1 N N N N N N 17.378 19.520 20.091 -3.991 1.034 -0.402 C20 A1APZ 13 A1APZ C21 C14 C 0 1 N N N N N N 15.877 19.492 19.928 -4.838 2.190 0.135 C21 A1APZ 14 A1APZ C22 C15 C 0 1 N N N N N N 17.905 20.825 19.548 -2.772 0.832 0.501 C22 A1APZ 15 A1APZ C23 C16 C 0 1 N N N N N N 15.377 18.098 19.629 -6.116 2.314 -0.697 C23 A1APZ 16 A1APZ C3 C17 C 0 1 Y N N N N N 21.578 16.430 21.888 2.619 2.975 2.068 C3 A1APZ 17 A1APZ C4 C18 C 0 1 Y N N N N N 16.851 22.590 21.929 -3.289 -2.287 1.110 C4 A1APZ 18 A1APZ C5 C19 C 0 1 Y N N N N N 21.797 19.187 22.201 0.036 2.895 1.074 C5 A1APZ 19 A1APZ C6 C20 C 0 1 Y N N N N N 16.701 23.386 23.038 -3.295 -3.661 1.223 C6 A1APZ 20 A1APZ C7 C21 C 0 1 Y N N N N N 19.053 23.431 23.444 -1.343 -3.819 -0.166 C7 A1APZ 21 A1APZ C8 C22 C 0 1 Y N N N N N 21.076 17.267 20.918 2.317 2.152 1.007 C8 A1APZ 22 A1APZ C9 C23 C 0 1 Y N N N N N 19.238 22.636 22.328 -1.322 -2.428 -0.291 C9 A1APZ 23 A1APZ F31 F1 F 0 1 N N N N N N 16.317 17.125 19.820 -6.890 1.160 -0.537 F31 A1APZ 24 A1APZ F32 F2 F 0 1 N N N N N N 14.941 18.044 18.336 -6.845 3.428 -0.267 F32 A1APZ 25 A1APZ F33 F3 F 0 1 N N N N N N 14.348 17.820 20.467 -5.781 2.469 -2.046 F33 A1APZ 26 A1APZ N24 N1 N 0 1 Y N N N N N 20.387 22.132 21.772 -0.508 -1.559 -0.944 N24 A1APZ 27 A1APZ N25 N2 N 0 1 Y N N N N N 18.657 21.480 20.593 -2.021 -0.343 0.053 N25 A1APZ 28 A1APZ N26 N3 N 0 1 N N N N N N 20.634 19.255 19.991 0.956 1.188 -0.560 N26 A1APZ 29 A1APZ N27 N4 N 0 1 N N N N N N 19.761 15.522 18.182 4.988 0.389 -0.076 N27 A1APZ 30 A1APZ O28 O1 O 0 1 N N N N N N 19.751 18.654 17.933 2.384 -0.228 -1.652 O28 A1APZ 31 A1APZ O29 O2 O 0 1 N N N N N N 19.231 14.349 15.954 6.509 0.030 -1.941 O29 A1APZ 32 A1APZ O30 O3 O 0 1 N N N N N N 18.578 13.205 18.111 5.834 -1.855 -0.488 O30 A1APZ 33 A1APZ S34 S1 S 0 1 N N N N N N 19.477 14.050 17.351 6.256 -0.508 -0.650 S34 A1APZ 34 A1APZ CL35 CL1 CL 0 0 N N N N N N 17.499 24.783 25.189 -2.351 -6.153 0.741 CL35 A1APZ 35 A1APZ H1 H1 H 0 1 N N N N N N 22.570 16.307 23.766 1.871 4.413 3.466 H1 A1APZ 36 A1APZ H2 H2 H 0 1 N N N N N N 18.219 16.442 19.440 4.262 0.533 1.956 H2 A1APZ 37 A1APZ H3 H3 H 0 1 N N N N N N 19.191 15.181 20.271 3.546 -0.826 0.983 H3 A1APZ 38 A1APZ H4 H4 H 0 1 N N N N N N 21.653 15.156 19.201 4.382 1.925 -1.471 H4 A1APZ 39 A1APZ H5 H5 H 0 1 N N N N N N 21.735 16.406 17.914 4.869 2.535 0.171 H5 A1APZ 40 A1APZ H6 H6 H 0 1 N N N N N N 21.336 13.131 18.511 7.837 0.940 0.446 H6 A1APZ 41 A1APZ H7 H7 H 0 1 N N N N N N 21.168 12.458 16.854 7.351 -0.416 1.492 H7 A1APZ 42 A1APZ H8 H8 H 0 1 N N N N N N 21.837 14.109 17.090 8.513 -0.683 0.170 H8 A1APZ 43 A1APZ H9 H9 H 0 1 N N N N N N 21.903 20.920 19.912 -0.019 0.726 -2.359 H9 A1APZ 44 A1APZ H10 H10 H 0 1 N N N N N N 20.549 20.927 18.732 -0.954 1.737 -1.231 H10 A1APZ 45 A1APZ H11 H11 H 0 1 N N N N N N 22.771 18.727 24.038 -0.422 4.342 2.574 H11 A1APZ 46 A1APZ H12 H12 H 0 1 N N N N N N 17.825 18.682 19.536 -4.587 0.122 -0.416 H12 A1APZ 47 A1APZ H13 H13 H 0 1 N N N N N N 17.635 19.433 21.157 -3.658 1.266 -1.414 H13 A1APZ 48 A1APZ H14 H14 H 0 1 N N N N N N 15.595 20.158 19.099 -5.098 1.996 1.176 H14 A1APZ 49 A1APZ H15 H15 H 0 1 N N N N N N 15.410 19.847 20.859 -4.269 3.118 0.069 H15 A1APZ 50 A1APZ H16 H16 H 0 1 N N N N N N 18.559 20.632 18.685 -2.132 1.713 0.450 H16 A1APZ 51 A1APZ H17 H17 H 0 1 N N N N N N 17.066 21.464 19.237 -3.102 0.682 1.529 H17 A1APZ 52 A1APZ H18 H18 H 0 1 N N N N N N 21.500 15.359 21.774 3.626 3.005 2.458 H18 A1APZ 53 A1APZ H19 H19 H 0 1 N N N N N N 16.005 22.263 21.343 -4.046 -1.699 1.607 H19 A1APZ 54 A1APZ H20 H20 H 0 1 N N N N N N 21.873 20.258 22.315 -0.974 2.863 0.694 H20 A1APZ 55 A1APZ H21 H21 H 0 1 N N N N N N 15.708 23.697 23.328 -4.060 -4.147 1.810 H21 A1APZ 56 A1APZ H22 H22 H 0 1 N N N N N N 19.898 23.757 24.033 -0.591 -4.419 -0.659 H22 A1APZ 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1APZ O29 S34 DOUB N N 1 A1APZ S34 C18 SING N N 2 A1APZ S34 O30 DOUB N N 3 A1APZ S34 N27 SING N N 4 A1APZ O28 C14 DOUB N N 5 A1APZ N27 C16 SING N N 6 A1APZ N27 C15 SING N N 7 A1APZ F32 C23 SING N N 8 A1APZ C16 C17 SING N N 9 A1APZ C14 C17 SING N N 10 A1APZ C14 N26 SING N N 11 A1APZ C15 C17 SING N N 12 A1APZ C22 C20 SING N N 13 A1APZ C22 N25 SING N N 14 A1APZ C17 C8 SING N N 15 A1APZ C23 F31 SING N N 16 A1APZ C23 C21 SING N N 17 A1APZ C23 F33 SING N N 18 A1APZ C19 N26 SING N N 19 A1APZ C19 C13 SING N N 20 A1APZ C21 C20 SING N N 21 A1APZ N26 C11 SING N N 22 A1APZ N25 C13 SING Y N 23 A1APZ N25 C10 SING Y N 24 A1APZ C13 N24 DOUB Y N 25 A1APZ C8 C11 SING Y N 26 A1APZ C8 C3 DOUB Y N 27 A1APZ C11 C5 DOUB Y N 28 A1APZ C10 C4 DOUB Y N 29 A1APZ C10 C9 SING Y N 30 A1APZ N24 C9 SING Y N 31 A1APZ C3 C1 SING Y N 32 A1APZ C4 C6 SING Y N 33 A1APZ C5 C2 SING Y N 34 A1APZ C9 C7 DOUB Y N 35 A1APZ C1 C2 DOUB Y N 36 A1APZ C6 C12 DOUB Y N 37 A1APZ C7 C12 SING Y N 38 A1APZ C12 CL35 SING N N 39 A1APZ C1 H1 SING N N 40 A1APZ C15 H2 SING N N 41 A1APZ C15 H3 SING N N 42 A1APZ C16 H4 SING N N 43 A1APZ C16 H5 SING N N 44 A1APZ C18 H6 SING N N 45 A1APZ C18 H7 SING N N 46 A1APZ C18 H8 SING N N 47 A1APZ C19 H9 SING N N 48 A1APZ C19 H10 SING N N 49 A1APZ C2 H11 SING N N 50 A1APZ C20 H12 SING N N 51 A1APZ C20 H13 SING N N 52 A1APZ C21 H14 SING N N 53 A1APZ C21 H15 SING N N 54 A1APZ C22 H16 SING N N 55 A1APZ C22 H17 SING N N 56 A1APZ C3 H18 SING N N 57 A1APZ C4 H19 SING N N 58 A1APZ C5 H20 SING N N 59 A1APZ C6 H21 SING N N 60 A1APZ C7 H22 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1APZ SMILES ACDLabs 12.01 "FC(F)(F)CCCn1c2ccc(Cl)cc2nc1CN1c2ccccc2C2(CN(C2)S(C)(=O)=O)C1=O" A1APZ InChI InChI 1.06 "InChI=1S/C23H22ClF3N4O3S/c1-35(33,34)29-13-22(14-29)16-5-2-3-6-18(16)31(21(22)32)12-20-28-17-11-15(24)7-8-19(17)30(20)10-4-9-23(25,26)27/h2-3,5-8,11H,4,9-10,12-14H2,1H3" A1APZ InChIKey InChI 1.06 FGAFKLPJKPDQGL-UHFFFAOYSA-N A1APZ SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)N1CC2(C1)C(=O)N(Cc3nc4cc(Cl)ccc4n3CCCC(F)(F)F)c5ccccc25" A1APZ SMILES CACTVS 3.385 "C[S](=O)(=O)N1CC2(C1)C(=O)N(Cc3nc4cc(Cl)ccc4n3CCCC(F)(F)F)c5ccccc25" A1APZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)N1CC2(C1)c3ccccc3N(C2=O)Cc4nc5cc(ccc5n4CCCC(F)(F)F)Cl" A1APZ SMILES "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)N1CC2(C1)c3ccccc3N(C2=O)Cc4nc5cc(ccc5n4CCCC(F)(F)F)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1APZ "SYSTEMATIC NAME" ACDLabs 12.01 "1'-{[5-chloro-1-(4,4,4-trifluorobutyl)-1H-1,3-benzimidazol-2-yl]methyl}-1-(methanesulfonyl)spiro[azetidine-3,3'-indol]-2'(1'H)-one" A1APZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1'-[[5-chloranyl-1-[4,4,4-tris(fluoranyl)butyl]benzimidazol-2-yl]methyl]-1-methylsulfonyl-spiro[azetidine-3,3'-indole]-2'-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1APZ "Create component" 2024-04-26 RCSB A1APZ "Initial release" 2024-07-10 RCSB #