data_A1AQN # _chem_comp.id A1AQN _chem_comp.name "9-{3-O-[(S)-thiophosphono]-alpha-L-lyxofuranosyl}-9H-purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O6 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-30 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.287 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AQN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BKQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AQN C02 C1 C 0 1 N N N N N N -11.381 14.166 22.674 2.123 -2.105 -0.726 C02 A1AQN 1 A1AQN C03 C2 C 0 1 N N S N N N -11.391 13.002 21.767 0.853 -1.304 -0.431 C03 A1AQN 2 A1AQN C04 C3 C 0 1 N N S N N N -10.356 12.187 21.688 1.213 0.135 -0.000 C04 A1AQN 3 A1AQN C10 C4 C 0 1 N N R N N N -11.085 11.450 20.641 0.107 1.005 -0.638 C10 A1AQN 4 A1AQN C12 C5 C 0 1 N N R N N N -12.512 11.167 21.248 -0.790 -0.011 -1.379 C12 A1AQN 5 A1AQN C14 C6 C 0 1 Y N N N N N -14.176 9.951 19.964 -2.020 -1.548 0.199 C14 A1AQN 6 A1AQN C16 C7 C 0 1 Y N N N N N -14.969 11.421 18.755 -3.863 -0.455 0.536 C16 A1AQN 7 A1AQN C17 C8 C 0 1 Y N N N N N -15.611 12.252 17.857 -5.120 0.048 0.910 C17 A1AQN 8 A1AQN C20 C9 C 0 1 Y N N N N N -14.411 13.992 18.613 -4.730 1.905 -0.404 C20 A1AQN 9 A1AQN C22 C10 C 0 1 Y N N N N N -14.048 11.993 19.565 -3.074 0.313 -0.337 C22 A1AQN 10 A1AQN N13 N1 N 0 1 Y N N N N N -13.600 11.051 20.330 -1.921 -0.404 -0.535 N13 A1AQN 11 A1AQN N15 N2 N 0 1 Y N N N N N -15.033 10.152 19.035 -3.160 -1.577 0.826 N15 A1AQN 12 A1AQN N18 N3 N 0 1 N N N N N N -16.580 11.707 16.974 -5.939 -0.662 1.771 N18 A1AQN 13 A1AQN N19 N4 N 0 1 Y N N N N N -15.316 13.514 17.819 -5.505 1.221 0.418 N19 A1AQN 14 A1AQN N21 N5 N 0 1 Y N N N N N -13.775 13.253 19.467 -3.542 1.477 -0.776 N21 A1AQN 15 A1AQN O01 O1 O 0 1 N N N N N N -11.846 15.095 21.758 1.770 -3.444 -1.081 O01 A1AQN 16 A1AQN O05 O2 O 0 1 N N N N N N -10.026 11.320 22.678 2.497 0.502 -0.506 O05 A1AQN 17 A1AQN O07 O3 O 0 1 N N N N N N -7.715 10.458 21.972 3.286 2.076 1.303 O07 A1AQN 18 A1AQN O09 O4 O 0 1 N N N N N N -8.536 9.854 23.994 4.962 1.417 -0.466 O09 A1AQN 19 A1AQN O11 O5 O 0 1 N N N N N N -10.407 10.347 20.259 0.674 1.940 -1.558 O11 A1AQN 20 A1AQN O23 O6 O 0 1 N N N N N N -12.774 12.237 21.863 0.068 -1.145 -1.633 O23 A1AQN 21 A1AQN P06 P1 P 0 1 N N N N N N -8.494 10.946 23.057 3.718 0.951 0.443 P06 A1AQN 22 A1AQN S08 S1 S 0 1 N N N N N N -7.596 12.508 24.164 4.305 -0.683 1.660 S08 A1AQN 23 A1AQN H022 H1 H 0 0 N N N N N N -10.372 14.405 23.041 2.662 -1.640 -1.552 H022 A1AQN 24 A1AQN H021 H2 H 0 0 N N N N N N -12.062 14.040 23.529 2.757 -2.119 0.160 H021 A1AQN 25 A1AQN H031 H3 H 0 0 N N N N N N -11.453 13.466 20.771 0.265 -1.798 0.343 H031 A1AQN 26 A1AQN H041 H4 H 0 0 N N N N N N -9.469 12.674 21.258 1.191 0.225 1.086 H041 A1AQN 27 A1AQN H101 H5 H 0 0 N N N N N N -11.227 12.122 19.781 -0.462 1.526 0.132 H101 A1AQN 28 A1AQN H121 H6 H 0 0 N N N N N N -12.452 10.283 21.900 -1.147 0.412 -2.318 H121 A1AQN 29 A1AQN H141 H7 H 0 0 N N N N N N -13.960 8.983 20.390 -1.266 -2.320 0.249 H141 A1AQN 30 A1AQN H201 H8 H 0 0 N N N N N N -14.178 15.045 18.561 -5.082 2.854 -0.780 H201 A1AQN 31 A1AQN H181 H9 H 0 0 N N N N N N -16.941 12.431 16.386 -5.647 -1.517 2.124 H181 A1AQN 32 A1AQN H182 H10 H 0 0 N N N N N N -16.155 10.999 16.409 -6.805 -0.304 2.022 H182 A1AQN 33 A1AQN H011 H11 H 0 0 N N N N N N -11.910 15.946 22.174 2.528 -4.010 -1.282 H011 A1AQN 34 A1AQN H1 H12 H 0 1 N N N N N N -8.045 9.119 23.646 5.298 0.728 -1.056 H1 A1AQN 35 A1AQN H111 H13 H 0 0 N N N N N N -10.897 9.891 19.585 0.024 2.513 -1.988 H111 A1AQN 36 A1AQN H2 H14 H 0 1 N N N N N N -6.401 12.040 24.372 5.314 -0.171 2.388 H2 A1AQN 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AQN C02 O01 SING N N 1 A1AQN C03 C02 SING N N 2 A1AQN C04 C03 SING N N 3 A1AQN P06 O05 SING N N 4 A1AQN O07 P06 DOUB N N 5 A1AQN S08 P06 SING N N 6 A1AQN O09 P06 SING N N 7 A1AQN O05 C04 SING N N 8 A1AQN C10 C04 SING N N 9 A1AQN O11 C10 SING N N 10 A1AQN C12 C10 SING N N 11 A1AQN C14 N13 SING Y N 12 A1AQN N15 C14 DOUB Y N 13 A1AQN C16 N15 SING Y N 14 A1AQN C17 C16 DOUB Y N 15 A1AQN N18 C17 SING N N 16 A1AQN N19 C17 SING Y N 17 A1AQN C20 N19 DOUB Y N 18 A1AQN N21 C20 SING Y N 19 A1AQN C22 N21 DOUB Y N 20 A1AQN N13 C12 SING N N 21 A1AQN O23 C12 SING N N 22 A1AQN C03 O23 SING N N 23 A1AQN N13 C22 SING Y N 24 A1AQN C16 C22 SING Y N 25 A1AQN C02 H022 SING N N 26 A1AQN C02 H021 SING N N 27 A1AQN C03 H031 SING N N 28 A1AQN C04 H041 SING N N 29 A1AQN C10 H101 SING N N 30 A1AQN C12 H121 SING N N 31 A1AQN C14 H141 SING N N 32 A1AQN C20 H201 SING N N 33 A1AQN N18 H181 SING N N 34 A1AQN N18 H182 SING N N 35 A1AQN O01 H011 SING N N 36 A1AQN O09 H1 SING N N 37 A1AQN O11 H111 SING N N 38 A1AQN S08 H2 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AQN SMILES ACDLabs 12.01 "O=P(O)(S)OC1C(CO)OC(n2cnc3c(N)ncnc32)C1O" A1AQN InChI InChI 1.06 "InChI=1S/C10H14N5O6PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(17)7(4(1-16)20-10)21-22(18,19)23/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,23)/t4-,6+,7+,10+/m0/s1" A1AQN InChIKey InChI 1.06 GJFFFGIFPPIFQW-HGOUYRHRSA-N A1AQN SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](CO)[C@@H](O[P](O)(S)=O)[C@H]3O" A1AQN SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O[P](O)(S)=O)[CH]3O" A1AQN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@@H](O3)CO)OP(=O)(O)S)O)N" A1AQN SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)OP(=O)(O)S)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AQN "SYSTEMATIC NAME" ACDLabs 12.01 "9-{3-O-[(S)-thiophosphono]-alpha-L-lyxofuranosyl}-9H-purin-6-amine" A1AQN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AQN "Create component" 2024-04-30 RCSB A1AQN "Initial release" 2024-09-04 RCSB #