data_A1AR1 # _chem_comp.id A1AR1 _chem_comp.name "5-acetamido-8-O-(5-acetamido-9-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H38 N2 O18" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-15 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 642.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AR1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BTB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AR1 C21 C1 C 0 1 N N R N N N 249.940 194.140 165.910 -3.497 0.784 2.039 C21 A1AR1 1 A1AR1 C6 C2 C 0 1 N N R N N N 243.528 191.837 168.938 2.811 0.807 -0.011 C6 A1AR1 2 A1AR1 C7 C3 C 0 1 N N R N N N 243.537 190.625 167.984 4.038 -0.100 -0.125 C7 A1AR1 3 A1AR1 C8 C4 C 0 1 N N R N N N 244.554 190.897 166.835 3.716 -1.472 0.472 C8 A1AR1 4 A1AR1 C11 C5 C 0 1 N N N N N N 239.209 190.297 169.581 6.098 4.409 -0.061 C11 A1AR1 5 A1AR1 C10 C6 C 0 1 N N N N N N 240.697 190.256 169.801 4.953 3.705 -0.743 C10 A1AR1 6 A1AR1 C9 C7 C 0 1 N N N N N N 244.568 189.772 165.776 4.943 -2.378 0.358 C9 A1AR1 7 A1AR1 C5 C8 C 0 1 N N R N N N 242.681 191.732 170.219 3.090 2.135 -0.720 C5 A1AR1 8 A1AR1 C4 C9 C 0 1 N N S N N N 242.806 193.107 170.926 1.836 3.013 -0.654 C4 A1AR1 9 A1AR1 C3 C10 C 0 1 N N N N N N 244.273 193.494 171.179 0.661 2.255 -1.280 C3 A1AR1 10 A1AR1 C2 C11 C 0 1 N N S N N N 245.125 193.401 169.887 0.476 0.923 -0.549 C2 A1AR1 11 A1AR1 O6 O1 O 0 1 N N N N N N 244.885 192.084 169.353 1.688 0.168 -0.623 O6 A1AR1 12 A1AR1 C1 C12 C 0 1 N N N N N N 244.853 194.568 168.831 0.134 1.185 0.895 C1 A1AR1 13 A1AR1 C12 C13 C 0 1 N N N N N N 248.769 193.426 165.066 -3.325 2.116 1.356 C12 A1AR1 14 A1AR1 C31 C14 C 0 1 N N N N N N 250.267 195.586 165.456 -4.982 0.413 2.070 C31 A1AR1 15 A1AR1 C41 C15 C 0 1 N N S N N N 249.112 196.561 165.763 -5.494 0.269 0.633 C41 A1AR1 16 A1AR1 C51 C16 C 0 1 N N R N N N 248.670 196.486 167.253 -4.648 -0.780 -0.096 C51 A1AR1 17 A1AR1 C61 C17 C 0 1 N N R N N N 248.438 195.001 167.621 -3.176 -0.363 -0.043 C61 A1AR1 18 A1AR1 C71 C18 C 0 1 N N S N N N 248.081 194.759 169.104 -2.318 -1.436 -0.716 C71 A1AR1 19 A1AR1 C81 C19 C 0 1 N N R N N N 247.470 193.347 169.266 -0.838 -1.082 -0.554 C81 A1AR1 20 A1AR1 C91 C20 C 0 1 N N N N N N 248.451 192.217 169.602 0.020 -2.154 -1.228 C91 A1AR1 21 A1AR1 CA9 C21 C 0 1 N N N N N N 243.119 188.876 164.094 5.576 -4.637 0.780 CA9 A1AR1 22 A1AR1 CM9 C22 C 0 1 N N N N N N 241.680 188.787 163.684 5.296 -6.045 1.239 CM9 A1AR1 23 A1AR1 N5 N1 N 0 1 N N N N N N 241.276 191.475 169.921 4.203 2.819 -0.058 N5 A1AR1 24 A1AR1 N51 N2 N 0 1 N N N N N N 247.424 197.254 167.498 -5.081 -0.873 -1.492 N51 A1AR1 25 A1AR1 O10 O2 O 0 1 N N N N N N 241.336 189.223 169.848 4.706 3.935 -1.907 O10 A1AR1 26 A1AR1 O1A O3 O 0 1 N N N N N N 244.589 195.669 169.271 0.939 1.951 1.648 O1A A1AR1 27 A1AR1 O1B O4 O 0 1 N N N N N N 244.755 194.306 167.635 -0.865 0.705 1.376 O1B A1AR1 28 A1AR1 O3 O5 O 0 1 N N N N N N 251.149 193.380 165.865 -2.998 0.865 3.376 O3 A1AR1 29 A1AR1 O4 O6 O 0 1 N N N N N N 242.074 193.137 172.141 2.063 4.225 -1.376 O4 A1AR1 30 A1AR1 O41 O7 O 0 1 N N N N N N 249.518 197.882 165.417 -6.860 -0.148 0.652 O41 A1AR1 31 A1AR1 O61 O8 O 0 1 N N N N N N 249.622 194.234 167.310 -2.772 -0.217 1.320 O61 A1AR1 32 A1AR1 O7 O9 O 0 1 N N N N N N 243.864 189.430 168.691 4.392 -0.251 -1.501 O7 A1AR1 33 A1AR1 O71 O10 O 0 1 N N N N N N 249.196 194.939 169.982 -2.574 -2.703 -0.107 O71 A1AR1 34 A1AR1 O8 O11 O 0 1 N N N N N N 244.280 192.160 166.204 3.361 -1.320 1.848 O8 A1AR1 35 A1AR1 O81 O12 O 0 1 N N N N N N 246.498 193.387 170.325 -0.582 0.185 -1.164 O81 A1AR1 36 A1AR1 O9 O13 O 0 1 N N N N N N 243.262 189.651 165.188 4.602 -3.714 0.816 O9 A1AR1 37 A1AR1 O91 O14 O 0 1 N N N N N N 247.694 191.020 169.750 -0.384 -2.302 -2.590 O91 A1AR1 38 A1AR1 OA9 O15 O 0 1 N N N N N N 244.032 188.323 163.513 6.676 -4.339 0.380 OA9 A1AR1 39 A1AR1 C101 C23 C 0 0 N N N N N N 247.286 198.457 168.126 -6.118 -1.667 -1.825 C101 A1AR1 40 A1AR1 C111 C24 C 0 0 N N N N N N 248.508 199.342 168.257 -6.562 -1.763 -3.262 C111 A1AR1 41 A1AR1 O101 O16 O 0 0 N N N N N N 246.195 198.798 168.542 -6.693 -2.304 -0.968 O101 A1AR1 42 A1AR1 O1A1 O17 O 0 0 N N N N N N 248.065 192.601 165.630 -3.816 2.306 0.121 O1A1 A1AR1 43 A1AR1 O1B1 O18 O 0 0 N N N N N N 248.488 193.869 163.963 -2.745 3.014 1.920 O1B1 A1AR1 44 A1AR1 H1 H1 H 0 1 N N N N N N 243.166 192.706 168.369 2.594 0.994 1.041 H1 A1AR1 45 A1AR1 H2 H2 H 0 1 N N N N N N 242.536 190.531 167.538 4.871 0.346 0.418 H2 A1AR1 46 A1AR1 H3 H3 H 0 1 N N N N N N 245.556 190.937 167.287 2.882 -1.918 -0.071 H3 A1AR1 47 A1AR1 H4 H4 H 0 1 N N N N N N 238.825 189.272 169.476 5.740 5.335 0.387 H4 A1AR1 48 A1AR1 H5 H5 H 0 1 N N N N N N 238.725 190.783 170.441 6.510 3.764 0.716 H5 A1AR1 49 A1AR1 H6 H6 H 0 1 N N N N N N 238.989 190.866 168.666 6.873 4.635 -0.794 H6 A1AR1 50 A1AR1 H7 H7 H 0 1 N N N N N N 244.844 188.821 166.255 5.266 -2.422 -0.682 H7 A1AR1 51 A1AR1 H8 H8 H 0 1 N N N N N N 245.302 190.015 164.993 5.749 -1.978 0.973 H8 A1AR1 52 A1AR1 H9 H9 H 0 1 N N N N N N 243.092 190.946 170.870 3.346 1.944 -1.762 H9 A1AR1 53 A1AR1 H10 H10 H 0 1 N N N N N N 242.385 193.859 170.243 1.608 3.244 0.387 H10 A1AR1 54 A1AR1 H11 H11 H 0 1 N N N N N N 244.695 192.814 171.934 -0.247 2.851 -1.187 H11 A1AR1 55 A1AR1 H12 H12 H 0 1 N N N N N N 244.309 194.527 171.555 0.868 2.068 -2.333 H12 A1AR1 56 A1AR1 H13 H13 H 0 1 N N N N N N 250.453 195.585 164.372 -5.111 -0.531 2.599 H13 A1AR1 57 A1AR1 H14 H14 H 0 1 N N N N N N 251.170 195.928 165.982 -5.542 1.197 2.579 H14 A1AR1 58 A1AR1 H15 H15 H 0 1 N N N N N N 248.251 196.270 165.144 -5.411 1.226 0.119 H15 A1AR1 59 A1AR1 H16 H16 H 0 1 N N N N N N 249.480 196.885 167.882 -4.771 -1.748 0.389 H16 A1AR1 60 A1AR1 H17 H17 H 0 1 N N N N N N 247.601 194.632 167.010 -3.047 0.585 -0.564 H17 A1AR1 61 A1AR1 H18 H18 H 0 1 N N N N N N 247.300 195.485 169.374 -2.565 -1.486 -1.777 H18 A1AR1 62 A1AR1 H19 H19 H 0 1 N N N N N N 246.966 193.089 168.323 -0.591 -1.031 0.506 H19 A1AR1 63 A1AR1 H20 H20 H 0 1 N N N N N N 249.182 192.100 168.788 1.068 -1.857 -1.190 H20 A1AR1 64 A1AR1 H21 H21 H 0 1 N N N N N N 248.979 192.445 170.540 -0.108 -3.103 -0.706 H21 A1AR1 65 A1AR1 H22 H22 H 0 1 N N N N N N 241.591 188.152 162.790 4.258 -6.122 1.563 H22 A1AR1 66 A1AR1 H23 H23 H 0 1 N N N N N N 241.092 188.350 164.504 5.473 -6.737 0.417 H23 A1AR1 67 A1AR1 H24 H24 H 0 1 N N N N N N 241.301 189.794 163.457 5.955 -6.293 2.071 H24 A1AR1 68 A1AR1 H25 H25 H 0 1 N N N N N N 240.686 192.272 169.794 4.400 2.634 0.874 H25 A1AR1 69 A1AR1 H26 H26 H 0 1 N N N N N N 246.580 196.837 167.160 -4.621 -0.363 -2.178 H26 A1AR1 70 A1AR1 H27 H27 H 0 1 N N N N N N 244.315 196.237 168.561 0.678 2.090 2.568 H27 A1AR1 71 A1AR1 H28 H28 H 0 1 N N N N N N 251.821 193.823 166.370 -2.061 1.096 3.432 H28 A1AR1 72 A1AR1 H29 H29 H 0 1 N N N N N N 242.171 193.990 172.548 1.309 4.830 -1.376 H29 A1AR1 73 A1AR1 H30 H30 H 0 1 N N N N N N 248.812 198.490 165.603 -7.453 0.467 1.105 H30 A1AR1 74 A1AR1 H31 H31 H 0 1 N N N N N N 243.111 189.143 169.194 3.696 -0.643 -2.046 H31 A1AR1 75 A1AR1 H32 H32 H 0 1 N N N N N N 248.923 194.779 170.878 -2.375 -2.731 0.839 H32 A1AR1 76 A1AR1 H33 H33 H 0 1 N N N N N N 244.485 192.866 166.805 4.057 -0.928 2.393 H33 A1AR1 77 A1AR1 H34 H34 H 0 1 N N N N N N 248.277 190.300 169.959 0.118 -2.967 -3.080 H34 A1AR1 78 A1AR1 H35 H35 H 0 1 N N N N N N 248.231 200.278 168.763 -6.022 -2.570 -3.756 H35 A1AR1 79 A1AR1 H36 H36 H 0 1 N N N N N N 249.277 198.821 168.846 -7.633 -1.967 -3.298 H36 A1AR1 80 A1AR1 H37 H37 H 0 1 N N N N N N 248.905 199.570 167.257 -6.355 -0.821 -3.770 H37 A1AR1 81 A1AR1 H38 H38 H 0 1 N N N N N N 247.318 192.393 165.081 -3.681 3.177 -0.276 H38 A1AR1 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AR1 OA9 CA9 DOUB N N 1 A1AR1 CM9 CA9 SING N N 2 A1AR1 O1B1 C12 DOUB N N 3 A1AR1 CA9 O9 SING N N 4 A1AR1 C12 O1A1 SING N N 5 A1AR1 C12 C21 SING N N 6 A1AR1 O9 C9 SING N N 7 A1AR1 O41 C41 SING N N 8 A1AR1 C31 C41 SING N N 9 A1AR1 C31 C21 SING N N 10 A1AR1 C41 C51 SING N N 11 A1AR1 C9 C8 SING N N 12 A1AR1 O3 C21 SING N N 13 A1AR1 C21 O61 SING N N 14 A1AR1 O8 C8 SING N N 15 A1AR1 C8 C7 SING N N 16 A1AR1 C51 N51 SING N N 17 A1AR1 C51 C61 SING N N 18 A1AR1 O61 C61 SING N N 19 A1AR1 N51 C101 SING N N 20 A1AR1 C61 C71 SING N N 21 A1AR1 O1B C1 DOUB N N 22 A1AR1 C7 O7 SING N N 23 A1AR1 C7 C6 SING N N 24 A1AR1 C101 C111 SING N N 25 A1AR1 C101 O101 DOUB N N 26 A1AR1 C1 O1A SING N N 27 A1AR1 C1 C2 SING N N 28 A1AR1 C6 O6 SING N N 29 A1AR1 C6 C5 SING N N 30 A1AR1 C71 C81 SING N N 31 A1AR1 C71 O71 SING N N 32 A1AR1 C81 C91 SING N N 33 A1AR1 C81 O81 SING N N 34 A1AR1 O6 C2 SING N N 35 A1AR1 C11 C10 SING N N 36 A1AR1 C91 O91 SING N N 37 A1AR1 C10 O10 DOUB N N 38 A1AR1 C10 N5 SING N N 39 A1AR1 C2 O81 SING N N 40 A1AR1 C2 C3 SING N N 41 A1AR1 N5 C5 SING N N 42 A1AR1 C5 C4 SING N N 43 A1AR1 C4 C3 SING N N 44 A1AR1 C4 O4 SING N N 45 A1AR1 C6 H1 SING N N 46 A1AR1 C7 H2 SING N N 47 A1AR1 C8 H3 SING N N 48 A1AR1 C11 H4 SING N N 49 A1AR1 C11 H5 SING N N 50 A1AR1 C11 H6 SING N N 51 A1AR1 C9 H7 SING N N 52 A1AR1 C9 H8 SING N N 53 A1AR1 C5 H9 SING N N 54 A1AR1 C4 H10 SING N N 55 A1AR1 C3 H11 SING N N 56 A1AR1 C3 H12 SING N N 57 A1AR1 C31 H13 SING N N 58 A1AR1 C31 H14 SING N N 59 A1AR1 C41 H15 SING N N 60 A1AR1 C51 H16 SING N N 61 A1AR1 C61 H17 SING N N 62 A1AR1 C71 H18 SING N N 63 A1AR1 C81 H19 SING N N 64 A1AR1 C91 H20 SING N N 65 A1AR1 C91 H21 SING N N 66 A1AR1 CM9 H22 SING N N 67 A1AR1 CM9 H23 SING N N 68 A1AR1 CM9 H24 SING N N 69 A1AR1 N5 H25 SING N N 70 A1AR1 N51 H26 SING N N 71 A1AR1 O1A H27 SING N N 72 A1AR1 O3 H28 SING N N 73 A1AR1 O4 H29 SING N N 74 A1AR1 O41 H30 SING N N 75 A1AR1 O7 H31 SING N N 76 A1AR1 O71 H32 SING N N 77 A1AR1 O8 H33 SING N N 78 A1AR1 O91 H34 SING N N 79 A1AR1 C111 H35 SING N N 80 A1AR1 C111 H36 SING N N 81 A1AR1 C111 H37 SING N N 82 A1AR1 O1A1 H38 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AR1 SMILES ACDLabs 12.01 "CC(=O)NC1C(O)CC(O)(OC1C(O)C(CO)OC1(CC(O)C(NC(C)=O)C(O1)C(O)C(O)COC(C)=O)C(=O)O)C(=O)O" A1AR1 InChI InChI 1.06 "InChI=1S/C24H38N2O18/c1-8(28)25-15-11(31)4-23(40,21(36)37)43-20(15)18(35)14(6-27)42-24(22(38)39)5-12(32)16(26-9(2)29)19(44-24)17(34)13(33)7-41-10(3)30/h11-20,27,31-35,40H,4-7H2,1-3H3,(H,25,28)(H,26,29)(H,36,37)(H,38,39)/t11-,12-,13+,14+,15+,16+,17+,18+,19+,20+,23+,24+/m0/s1" A1AR1 InChIKey InChI 1.06 QVOOKWBBWNXZSQ-AWPLQUQCSA-N A1AR1 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@@H](CO)O[C@@]2(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O2)[C@H](O)[C@H](O)COC(C)=O)C(O)=O)C(O)=O" A1AR1 SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](CO)O[C]2(C[CH](O)[CH](NC(C)=O)[CH](O2)[CH](O)[CH](O)COC(C)=O)C(O)=O)C(O)=O" A1AR1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O[C@@]2(C[C@@H]([C@H]([C@@H](O2)[C@@H]([C@@H](COC(=O)C)O)O)NC(=O)C)O)C(=O)O)O)(C(=O)O)O)O" A1AR1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(CC(OC1C(C(CO)OC2(CC(C(C(O2)C(C(COC(=O)C)O)O)NC(=O)C)O)C(=O)O)O)(C(=O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AR1 "SYSTEMATIC NAME" ACDLabs 12.01 "5-acetamido-8-O-(5-acetamido-9-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" A1AR1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{S},2~{R})-2-[(2~{S},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2-carboxy-4-oxidanyl-oxan-2-yl]oxy-1,3-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AR1 "Create component" 2024-05-15 RCSB A1AR1 "Initial release" 2025-05-14 RCSB #