data_A1AR4 # _chem_comp.id A1AR4 _chem_comp.name "benzyl (7S)-7-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6-azaspiro[3.4]octane-6-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H31 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-15 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.509 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AR4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BS8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AR4 N1 N1 N 0 1 N N N N N N -8.483 -14.780 -18.421 0.891 -0.911 -0.140 N1 A1AR4 1 A1AR4 N3 N2 N 0 1 N N N N N N -15.241 -16.400 -15.977 -4.266 1.565 -2.276 N3 A1AR4 2 A1AR4 C4 C1 C 0 1 N N N N N N -8.147 -12.428 -18.459 -0.775 -2.682 -0.128 C4 A1AR4 3 A1AR4 C5 C2 C 0 1 N N N N N N -10.387 -13.314 -17.905 -1.322 -0.407 0.749 C5 A1AR4 4 A1AR4 C6 C3 C 0 1 N N N N N N -12.601 -11.023 -16.377 -3.846 -0.412 2.697 C6 A1AR4 5 A1AR4 C7 C4 C 0 1 N N S N N N -12.515 -12.490 -16.809 -3.391 0.556 1.603 C7 A1AR4 6 A1AR4 C8 C5 C 0 1 N N N N N N -13.297 -13.335 -15.797 -4.615 1.213 0.962 C8 A1AR4 7 A1AR4 C10 C6 C 0 1 N N N N N N -14.253 -15.546 -15.259 -3.448 1.621 -1.211 C10 A1AR4 8 A1AR4 C13 C7 C 0 1 N N N N N N -6.291 -12.301 -20.142 0.859 -4.690 0.091 C13 A1AR4 9 A1AR4 C15 C8 C 0 1 N N N N N N -5.469 -13.122 -18.338 0.885 -3.744 -1.815 C15 A1AR4 10 A1AR4 C17 C9 C 0 1 N N N N N N -9.262 -18.267 -18.932 3.407 1.717 -0.188 C17 A1AR4 11 A1AR4 C20 C10 C 0 1 Y N N N N N -8.853 -18.765 -22.725 7.107 1.344 -0.841 C20 A1AR4 12 A1AR4 C21 C11 C 0 1 Y N N N N N -8.088 -20.089 -22.731 7.627 1.483 0.432 C21 A1AR4 13 A1AR4 C22 C12 C 0 1 Y N N N N N -7.801 -20.684 -21.590 6.781 1.692 1.505 C22 A1AR4 14 A1AR4 C1 C13 C 0 1 N N N N N N -6.897 -13.126 -18.965 0.620 -3.266 -0.393 C1 A1AR4 15 A1AR4 C11 C14 C 0 1 N N N N N N -14.186 -14.882 -17.559 -5.379 2.967 -0.680 C11 A1AR4 16 A1AR4 C12 C15 C 0 1 N N N N N N -15.010 -16.189 -17.491 -5.581 2.139 -1.969 C12 A1AR4 17 A1AR4 C14 C16 C 0 1 N N N N N N -4.920 -12.428 -19.546 0.460 -5.142 -1.327 C14 A1AR4 18 A1AR4 C16 C17 C 0 1 N N N N N N -8.966 -16.097 -18.069 1.494 0.291 -0.238 C16 A1AR4 19 A1AR4 C18 C18 C 0 1 Y N N N N N -8.851 -18.910 -20.255 4.896 1.634 0.031 C18 A1AR4 20 A1AR4 C19 C19 C 0 1 Y N N N N N -9.204 -18.220 -21.572 5.741 1.419 -1.042 C19 A1AR4 21 A1AR4 C2 C20 C 0 1 N N N N N N -7.517 -14.461 -19.496 1.568 -2.191 0.154 C2 A1AR4 22 A1AR4 C23 C21 C 0 1 Y N N N N N -8.188 -20.047 -20.256 5.415 1.762 1.306 C23 A1AR4 23 A1AR4 C3 C22 C 0 1 N N S N N N -8.869 -13.552 -17.761 -0.549 -1.162 -0.302 C3 A1AR4 24 A1AR4 C9 C23 C 0 1 N N S N N N -13.436 -14.816 -16.282 -4.157 2.272 -0.044 C9 A1AR4 25 A1AR4 N2 N3 N 0 1 N N N N N N -11.100 -12.793 -16.761 -2.640 -0.178 0.582 N2 A1AR4 26 A1AR4 O1 O1 O 0 1 N N N N N N -10.943 -13.542 -18.942 -0.758 -0.004 1.744 O1 A1AR4 27 A1AR4 O2 O2 O 0 1 N N N N N N -14.135 -15.466 -14.095 -2.307 1.210 -1.189 O2 A1AR4 28 A1AR4 O3 O3 O 0 1 N N N N N N -13.844 -10.460 -16.724 -4.774 -1.350 2.146 O3 A1AR4 29 A1AR4 O4 O4 O 0 1 N N N N N N -9.830 -16.224 -17.256 0.835 1.283 -0.479 O4 A1AR4 30 A1AR4 O5 O5 O 0 1 N N N N N N -8.391 -17.194 -18.722 2.826 0.392 -0.068 O5 A1AR4 31 A1AR4 H13 H1 H 0 1 N N N N N N -15.925 -16.997 -15.558 -4.018 1.196 -3.138 H13 A1AR4 32 A1AR4 H5 H2 H 0 1 N N N N N N -7.897 -11.617 -17.759 -1.495 -3.055 -0.856 H5 A1AR4 33 A1AR4 H4 H3 H 0 1 N N N N N N -8.744 -12.024 -19.290 -1.101 -2.907 0.887 H4 A1AR4 34 A1AR4 H7 H4 H 0 1 N N N N N N -12.472 -10.962 -15.286 -2.982 -0.946 3.092 H7 A1AR4 35 A1AR4 H6 H5 H 0 1 N N N N N N -11.800 -10.456 -16.873 -4.327 0.146 3.499 H6 A1AR4 36 A1AR4 H9 H6 H 0 1 N N N N N N -12.927 -12.620 -17.821 -2.753 1.324 2.041 H9 A1AR4 37 A1AR4 H11 H7 H 0 1 N N N N N N -12.767 -13.322 -14.833 -5.206 0.456 0.448 H11 A1AR4 38 A1AR4 H10 H8 H 0 1 N N N N N N -14.301 -12.904 -15.670 -5.221 1.685 1.735 H10 A1AR4 39 A1AR4 H19 H9 H 0 1 N N N N N N -6.397 -12.782 -21.126 1.899 -4.899 0.340 H19 A1AR4 40 A1AR4 H20 H10 H 0 1 N N N N N N -6.659 -11.266 -20.198 0.163 -5.014 0.865 H20 A1AR4 41 A1AR4 H24 H11 H 0 1 N N N N N N -5.390 -12.534 -17.411 0.209 -3.315 -2.555 H24 A1AR4 42 A1AR4 H23 H12 H 0 1 N N N N N N -5.052 -14.126 -18.172 1.932 -3.681 -2.110 H23 A1AR4 43 A1AR4 H26 H13 H 0 1 N N N N N N -9.172 -18.995 -18.112 2.966 2.376 0.560 H26 A1AR4 44 A1AR4 H25 H14 H 0 1 N N N N N N -10.300 -17.907 -18.991 3.207 2.113 -1.184 H25 A1AR4 45 A1AR4 H28 H15 H 0 1 N N N N N N -9.105 -18.278 -23.656 7.767 1.180 -1.679 H28 A1AR4 46 A1AR4 H29 H16 H 0 1 N N N N N N -7.784 -20.535 -23.666 8.694 1.428 0.588 H29 A1AR4 47 A1AR4 H30 H17 H 0 1 N N N N N N -7.286 -21.633 -21.598 7.188 1.800 2.500 H30 A1AR4 48 A1AR4 H15 H18 H 0 1 N N N N N N -14.853 -14.013 -17.658 -5.148 4.006 -0.917 H15 A1AR4 49 A1AR4 H14 H19 H 0 1 N N N N N N -13.491 -14.910 -18.411 -6.253 2.901 -0.033 H14 A1AR4 50 A1AR4 H17 H20 H 0 1 N N N N N N -14.447 -17.030 -17.923 -5.911 2.783 -2.783 H17 A1AR4 51 A1AR4 H16 H21 H 0 1 N N N N N N -15.967 -16.077 -18.022 -6.308 1.345 -1.796 H16 A1AR4 52 A1AR4 H21 H22 H 0 1 N N N N N N -4.234 -13.049 -20.141 1.081 -5.948 -1.719 H21 A1AR4 53 A1AR4 H22 H23 H 0 1 N N N N N N -4.442 -11.463 -19.324 -0.607 -5.337 -1.438 H22 A1AR4 54 A1AR4 H27 H24 H 0 1 N N N N N N -9.742 -17.284 -21.561 5.335 1.320 -2.037 H27 A1AR4 55 A1AR4 H1 H25 H 0 1 N N N N N N -8.023 -14.314 -20.462 2.530 -2.237 -0.357 H1 A1AR4 56 A1AR4 H2 H26 H 0 1 N N N N N N -6.754 -15.247 -19.598 1.701 -2.312 1.229 H2 A1AR4 57 A1AR4 H31 H27 H 0 1 N N N N N N -7.921 -20.524 -19.325 4.754 1.925 2.144 H31 A1AR4 58 A1AR4 H3 H28 H 0 1 N N N N N N -8.597 -13.574 -16.695 -0.870 -0.851 -1.296 H3 A1AR4 59 A1AR4 H12 H29 H 0 1 N N N N N N -12.440 -15.272 -16.385 -3.506 3.000 0.440 H12 A1AR4 60 A1AR4 H8 H30 H 0 1 N N N N N N -10.600 -12.637 -15.909 -3.091 -0.501 -0.214 H8 A1AR4 61 A1AR4 H18 H31 H 0 1 N N N N N N -13.870 -9.552 -16.445 -5.105 -1.996 2.785 H18 A1AR4 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AR4 C1 C2 SING N N 1 A1AR4 C1 C4 SING N N 2 A1AR4 C1 C13 SING N N 3 A1AR4 C1 C15 SING N N 4 A1AR4 C2 N1 SING N N 5 A1AR4 N1 C3 SING N N 6 A1AR4 N1 C16 SING N N 7 A1AR4 C3 C4 SING N N 8 A1AR4 C3 C5 SING N N 9 A1AR4 C5 O1 DOUB N N 10 A1AR4 C5 N2 SING N N 11 A1AR4 C6 C7 SING N N 12 A1AR4 C6 O3 SING N N 13 A1AR4 N2 C7 SING N N 14 A1AR4 C7 C8 SING N N 15 A1AR4 C8 C9 SING N N 16 A1AR4 C9 C10 SING N N 17 A1AR4 C9 C11 SING N N 18 A1AR4 C10 O2 DOUB N N 19 A1AR4 C10 N3 SING N N 20 A1AR4 N3 C12 SING N N 21 A1AR4 C11 C12 SING N N 22 A1AR4 C13 C14 SING N N 23 A1AR4 C14 C15 SING N N 24 A1AR4 C16 O4 DOUB N N 25 A1AR4 C16 O5 SING N N 26 A1AR4 O5 C17 SING N N 27 A1AR4 C17 C18 SING N N 28 A1AR4 C18 C19 DOUB Y N 29 A1AR4 C18 C23 SING Y N 30 A1AR4 C19 C20 SING Y N 31 A1AR4 C20 C21 DOUB Y N 32 A1AR4 C21 C22 SING Y N 33 A1AR4 C22 C23 DOUB Y N 34 A1AR4 N3 H13 SING N N 35 A1AR4 C4 H5 SING N N 36 A1AR4 C4 H4 SING N N 37 A1AR4 C6 H7 SING N N 38 A1AR4 C6 H6 SING N N 39 A1AR4 C7 H9 SING N N 40 A1AR4 C8 H11 SING N N 41 A1AR4 C8 H10 SING N N 42 A1AR4 C13 H19 SING N N 43 A1AR4 C13 H20 SING N N 44 A1AR4 C15 H24 SING N N 45 A1AR4 C15 H23 SING N N 46 A1AR4 C17 H26 SING N N 47 A1AR4 C17 H25 SING N N 48 A1AR4 C20 H28 SING N N 49 A1AR4 C21 H29 SING N N 50 A1AR4 C22 H30 SING N N 51 A1AR4 C11 H15 SING N N 52 A1AR4 C11 H14 SING N N 53 A1AR4 C12 H17 SING N N 54 A1AR4 C12 H16 SING N N 55 A1AR4 C14 H21 SING N N 56 A1AR4 C14 H22 SING N N 57 A1AR4 C19 H27 SING N N 58 A1AR4 C2 H1 SING N N 59 A1AR4 C2 H2 SING N N 60 A1AR4 C23 H31 SING N N 61 A1AR4 C3 H3 SING N N 62 A1AR4 C9 H12 SING N N 63 A1AR4 N2 H8 SING N N 64 A1AR4 O3 H18 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AR4 SMILES ACDLabs 12.01 "O=C1NCCC1CC(CO)NC(=O)C1CC2(CCC2)CN1C(=O)OCc1ccccc1" A1AR4 InChI InChI 1.06 "InChI=1S/C23H31N3O5/c27-13-18(11-17-7-10-24-20(17)28)25-21(29)19-12-23(8-4-9-23)15-26(19)22(30)31-14-16-5-2-1-3-6-16/h1-3,5-6,17-19,27H,4,7-15H2,(H,24,28)(H,25,29)/t17-,18+,19-/m0/s1" A1AR4 InChIKey InChI 1.06 HMWSWZBUIUMKHP-OTWHNJEPSA-N A1AR4 SMILES_CANONICAL CACTVS 3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2CC3(CCC3)CN2C(=O)OCc4ccccc4" A1AR4 SMILES CACTVS 3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2CC3(CCC3)CN2C(=O)OCc4ccccc4" A1AR4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N2CC3(CCC3)C[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO" A1AR4 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N2CC3(CCC3)CC2C(=O)NC(CC4CCNC4=O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AR4 "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl (7S)-7-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6-azaspiro[3.4]octane-6-carboxylate" A1AR4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) (7~{S})-7-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-6-azaspiro[3.4]octane-6-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AR4 "Create component" 2024-05-15 RCSB A1AR4 "Modify PCM" 2024-09-27 PDBE A1AR4 "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AR4 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C6 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #