data_A1AR6 # _chem_comp.id A1AR6 _chem_comp.name "(3S)-N-{(2S)-1-amino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-2-[(2R)-3,3-dimethyl-2-(2,2,2-trifluoroacetamido)butanoyl]-2-azaspiro[4.5]decane-3-carboxamide " _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H40 F3 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-15 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 531.611 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AR6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BSE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AR6 N1 N1 N 0 1 N N N N N N -8.499 -17.846 -18.154 -2.626 1.658 -0.091 N1 A1AR6 1 A1AR6 N3 N2 N 0 1 N N N N N N -15.195 -15.925 -16.150 5.425 3.543 1.426 N3 A1AR6 2 A1AR6 C4 C1 C 0 1 N N N N N N -10.360 -17.468 -19.769 -2.598 0.237 -2.082 C4 A1AR6 3 A1AR6 C5 C2 C 0 1 N N N N N N -9.963 -18.740 -20.534 -1.737 1.268 -2.813 C5 A1AR6 4 A1AR6 C6 C3 C 0 1 N N N N N N -10.941 -16.468 -20.778 -4.077 0.533 -2.339 C6 A1AR6 5 A1AR6 C7 C4 C 0 1 N N N N N N -11.436 -17.872 -18.749 -2.262 -1.165 -2.594 C7 A1AR6 6 A1AR6 C8 C5 C 0 1 N N N N N N -7.372 -12.953 -19.768 -0.529 -3.560 0.718 C8 A1AR6 7 A1AR6 C10 C6 C 0 1 N N S N N N -9.075 -13.213 -17.999 0.875 -1.635 0.446 C10 A1AR6 8 A1AR6 C13 C7 C 0 1 N N N N N N -15.103 -15.692 -17.591 4.391 3.941 0.464 C13 A1AR6 9 A1AR6 C15 C8 C 0 1 N N N N N N -14.366 -15.172 -15.440 5.527 2.205 1.509 C15 A1AR6 10 A1AR6 C17 C9 C 0 1 N N N N N N -13.290 -12.926 -15.778 5.203 0.412 -0.202 C17 A1AR6 11 A1AR6 C20 C10 C 0 1 N N N N N N -6.084 -13.364 -19.028 -0.561 -3.705 2.233 C20 A1AR6 12 A1AR6 C21 C11 C 0 1 N N N N N N -5.061 -12.247 -18.850 -1.978 -4.068 2.684 C21 A1AR6 13 A1AR6 C22 C12 C 0 1 N N N N N N -4.724 -11.585 -20.176 -2.405 -5.375 2.014 C22 A1AR6 14 A1AR6 C24 C13 C 0 1 N N N N N N -7.014 -12.211 -21.071 -0.979 -4.843 0.033 C24 A1AR6 15 A1AR6 C1 C14 C 0 1 N N N N N N -7.184 -18.079 -18.167 -3.889 1.976 0.255 C1 A1AR6 16 A1AR6 C11 C15 C 0 1 N N N N N N -8.315 -12.151 -18.827 0.891 -3.173 0.248 C11 A1AR6 17 A1AR6 C12 C16 C 0 1 N N N N N N -10.555 -12.876 -17.993 1.874 -0.978 -0.472 C12 A1AR6 18 A1AR6 C14 C17 C 0 1 N N N N N N -14.351 -14.371 -17.684 4.122 2.684 -0.394 C14 A1AR6 19 A1AR6 C16 C18 C 0 1 N N S N N N -13.567 -14.300 -16.381 4.536 1.549 0.574 C16 A1AR6 20 A1AR6 C18 C19 C 0 1 N N S N N N -12.490 -11.975 -16.716 4.152 -0.323 -1.035 C18 A1AR6 21 A1AR6 C19 C20 C 0 1 N N N N N N -12.561 -10.491 -16.287 4.835 -1.390 -1.893 C19 A1AR6 22 A1AR6 C2 C21 C 0 1 N N R N N N -9.117 -16.882 -19.049 -2.317 0.312 -0.579 C2 A1AR6 23 A1AR6 C23 C22 C 0 1 N N N N N N -5.998 -11.090 -20.863 -2.395 -5.201 0.494 C23 A1AR6 24 A1AR6 C25 C23 C 0 1 N N N N N N -6.646 -19.112 -17.195 -4.207 3.361 0.758 C25 A1AR6 25 A1AR6 C3 C24 C 0 1 N N N N N N -9.340 -15.609 -18.234 -0.863 0.006 -0.325 C3 A1AR6 26 A1AR6 C9 C25 C 0 1 N N N N N N -8.166 -14.249 -20.024 -1.396 -2.373 0.269 C9 A1AR6 27 A1AR6 F1 F1 F 0 1 N N N N N N -7.290 -20.267 -17.316 -5.572 3.449 1.051 F1 A1AR6 28 A1AR6 F2 F2 F 0 1 N N N N N N -5.351 -19.323 -17.384 -3.464 3.619 1.915 F2 A1AR6 29 A1AR6 F3 F3 F 0 1 N N N N N N -6.812 -18.721 -15.950 -3.879 4.300 -0.226 F3 A1AR6 30 A1AR6 N2 N3 N 0 1 N N N N N N -8.881 -14.448 -18.746 -0.496 -1.222 0.092 N2 A1AR6 31 A1AR6 N4 N4 N 0 1 N N N N N N -11.070 -12.400 -16.856 3.181 -0.962 -0.144 N4 A1AR6 32 A1AR6 N6 N5 N 0 1 N N N N N N -13.585 -9.633 -16.920 3.816 -2.175 -2.603 N6 A1AR6 33 A1AR6 O1 O1 O 0 1 N N N N N N -9.934 -15.653 -17.144 -0.024 0.865 -0.495 O1 A1AR6 34 A1AR6 O2 O2 O 0 1 N N N N N N -6.391 -17.528 -18.911 -4.770 1.147 0.163 O2 A1AR6 35 A1AR6 O3 O3 O 0 1 N N N N N N -14.233 -15.169 -14.211 6.301 1.611 2.229 O3 A1AR6 36 A1AR6 O4 O4 O 0 1 N N N N N N -11.212 -13.037 -19.031 1.501 -0.464 -1.505 O4 A1AR6 37 A1AR6 H1 H1 H 0 1 N N N N N N -9.075 -18.349 -17.510 -1.922 2.322 -0.021 H1 A1AR6 38 A1AR6 H21 H2 H 0 1 N N N N N N -15.822 -16.588 -15.740 5.969 4.166 1.934 H21 A1AR6 39 A1AR6 H4 H3 H 0 1 N N N N N N -10.846 -19.153 -21.043 -1.977 2.267 -2.448 H4 A1AR6 40 A1AR6 H5 H4 H 0 1 N N N N N N -9.192 -18.494 -21.279 -0.684 1.058 -2.630 H5 A1AR6 41 A1AR6 H3 H5 H 0 1 N N N N N N -9.566 -19.484 -19.827 -1.938 1.215 -3.884 H3 A1AR6 42 A1AR6 H7 H6 H 0 1 N N N N N N -11.819 -16.912 -21.271 -4.278 0.479 -3.409 H7 A1AR6 43 A1AR6 H6 H7 H 0 1 N N N N N N -11.241 -15.549 -20.252 -4.691 -0.202 -1.817 H6 A1AR6 44 A1AR6 H8 H8 H 0 1 N N N N N N -10.180 -16.226 -21.534 -4.317 1.531 -1.973 H8 A1AR6 45 A1AR6 H10 H9 H 0 1 N N N N N N -12.308 -18.284 -19.279 -1.214 -1.385 -2.389 H10 A1AR6 46 A1AR6 H11 H10 H 0 1 N N N N N N -11.028 -18.633 -18.067 -2.893 -1.897 -2.091 H11 A1AR6 47 A1AR6 H9 H11 H 0 1 N N N N N N -11.743 -16.988 -18.171 -2.439 -1.211 -3.669 H9 A1AR6 48 A1AR6 H14 H12 H 0 1 N N N N N N -8.674 -13.276 -16.977 1.092 -1.385 1.484 H14 A1AR6 49 A1AR6 H17 H13 H 0 1 N N N N N N -16.103 -15.609 -18.042 3.484 4.241 0.988 H17 A1AR6 50 A1AR6 H18 H14 H 0 1 N N N N N N -14.544 -16.500 -18.086 4.752 4.755 -0.163 H18 A1AR6 51 A1AR6 H23 H15 H 0 1 N N N N N N -14.254 -12.450 -15.543 5.969 0.821 -0.861 H23 A1AR6 52 A1AR6 H24 H16 H 0 1 N N N N N N -12.713 -13.064 -14.851 5.663 -0.285 0.499 H24 A1AR6 53 A1AR6 H29 H17 H 0 1 N N N N N N -6.366 -13.731 -18.030 0.130 -4.492 2.537 H29 A1AR6 54 A1AR6 H28 H18 H 0 1 N N N N N N -5.608 -14.176 -19.597 -0.263 -2.763 2.694 H28 A1AR6 55 A1AR6 H31 H19 H 0 1 N N N N N N -5.473 -11.490 -18.167 -1.995 -4.192 3.767 H31 A1AR6 56 A1AR6 H30 H20 H 0 1 N N N N N N -4.142 -12.669 -18.417 -2.666 -3.272 2.398 H30 A1AR6 57 A1AR6 H33 H21 H 0 1 N N N N N N -4.054 -10.731 -19.995 -1.712 -6.169 2.293 H33 A1AR6 58 A1AR6 H32 H22 H 0 1 N N N N N N -4.221 -12.314 -20.828 -3.410 -5.640 2.343 H32 A1AR6 59 A1AR6 H36 H23 H 0 1 N N N N N N -6.594 -12.937 -21.783 -0.975 -4.699 -1.047 H36 A1AR6 60 A1AR6 H37 H24 H 0 1 N N N N N N -7.933 -11.777 -21.490 -0.297 -5.652 0.294 H37 A1AR6 61 A1AR6 H16 H25 H 0 1 N N N N N N -7.730 -11.494 -18.166 1.651 -3.640 0.874 H16 A1AR6 62 A1AR6 H15 H26 H 0 1 N N N N N N -9.020 -11.545 -19.415 1.039 -3.431 -0.801 H15 A1AR6 63 A1AR6 H19 H27 H 0 1 N N N N N N -13.672 -14.368 -18.549 3.066 2.607 -0.652 H19 A1AR6 64 A1AR6 H20 H28 H 0 1 N N N N N N -15.052 -13.527 -17.765 4.742 2.684 -1.290 H20 A1AR6 65 A1AR6 H22 H29 H 0 1 N N N N N N -12.597 -14.790 -16.549 3.674 1.179 1.129 H22 A1AR6 66 A1AR6 H38 H30 H 0 1 N N N N N N -12.956 -12.043 -17.710 3.638 0.389 -1.682 H38 A1AR6 67 A1AR6 H26 H31 H 0 1 N N N N N N -12.744 -10.473 -15.202 5.492 -0.908 -2.617 H26 A1AR6 68 A1AR6 H27 H32 H 0 1 N N N N N N -11.580 -10.042 -16.501 5.422 -2.050 -1.254 H27 A1AR6 69 A1AR6 H2 H33 H 0 1 N N N N N N -8.386 -16.635 -19.833 -2.938 -0.416 -0.057 H2 A1AR6 70 A1AR6 H35 H34 H 0 1 N N N N N N -6.456 -10.308 -20.239 -2.708 -6.130 0.019 H35 A1AR6 71 A1AR6 H34 H35 H 0 1 N N N N N N -5.731 -10.668 -21.843 -3.081 -4.401 0.216 H34 A1AR6 72 A1AR6 H12 H36 H 0 1 N N N N N N -8.872 -14.124 -20.858 -1.888 -2.609 -0.675 H12 A1AR6 73 A1AR6 H13 H37 H 0 1 N N N N N N -7.492 -15.092 -20.237 -2.141 -2.148 1.032 H13 A1AR6 74 A1AR6 H25 H38 H 0 1 N N N N N N -10.471 -12.325 -16.058 3.478 -1.373 0.683 H25 A1AR6 75 A1AR6 H44 H39 H 0 1 N N N N N N -13.518 -8.706 -16.552 4.243 -2.886 -3.177 H44 A1AR6 76 A1AR6 H43 H40 H 0 1 N N N N N N -13.436 -9.611 -17.909 3.156 -2.579 -1.956 H43 A1AR6 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AR6 C1 N1 SING N N 1 A1AR6 C1 O2 DOUB N N 2 A1AR6 C1 C25 SING N N 3 A1AR6 N1 C2 SING N N 4 A1AR6 C2 C3 SING N N 5 A1AR6 C2 C4 SING N N 6 A1AR6 C3 O1 DOUB N N 7 A1AR6 C3 N2 SING N N 8 A1AR6 C4 C5 SING N N 9 A1AR6 C4 C6 SING N N 10 A1AR6 C4 C7 SING N N 11 A1AR6 C8 C9 SING N N 12 A1AR6 C8 C11 SING N N 13 A1AR6 C8 C20 SING N N 14 A1AR6 C8 C24 SING N N 15 A1AR6 C9 N2 SING N N 16 A1AR6 N2 C10 SING N N 17 A1AR6 C10 C11 SING N N 18 A1AR6 C10 C12 SING N N 19 A1AR6 C12 N4 SING N N 20 A1AR6 C12 O4 DOUB N N 21 A1AR6 C13 C14 SING N N 22 A1AR6 C13 N3 SING N N 23 A1AR6 C14 C16 SING N N 24 A1AR6 N3 C15 SING N N 25 A1AR6 O3 C15 DOUB N N 26 A1AR6 C15 C16 SING N N 27 A1AR6 C16 C17 SING N N 28 A1AR6 C17 C18 SING N N 29 A1AR6 C18 N4 SING N N 30 A1AR6 C18 C19 SING N N 31 A1AR6 C19 N6 SING N N 32 A1AR6 C20 C21 SING N N 33 A1AR6 C21 C22 SING N N 34 A1AR6 C22 C23 SING N N 35 A1AR6 C23 C24 SING N N 36 A1AR6 C25 F1 SING N N 37 A1AR6 C25 F2 SING N N 38 A1AR6 C25 F3 SING N N 39 A1AR6 N1 H1 SING N N 40 A1AR6 N3 H21 SING N N 41 A1AR6 C5 H4 SING N N 42 A1AR6 C5 H5 SING N N 43 A1AR6 C5 H3 SING N N 44 A1AR6 C6 H7 SING N N 45 A1AR6 C6 H6 SING N N 46 A1AR6 C6 H8 SING N N 47 A1AR6 C7 H10 SING N N 48 A1AR6 C7 H11 SING N N 49 A1AR6 C7 H9 SING N N 50 A1AR6 C10 H14 SING N N 51 A1AR6 C13 H17 SING N N 52 A1AR6 C13 H18 SING N N 53 A1AR6 C17 H23 SING N N 54 A1AR6 C17 H24 SING N N 55 A1AR6 C20 H29 SING N N 56 A1AR6 C20 H28 SING N N 57 A1AR6 C21 H31 SING N N 58 A1AR6 C21 H30 SING N N 59 A1AR6 C22 H33 SING N N 60 A1AR6 C22 H32 SING N N 61 A1AR6 C24 H36 SING N N 62 A1AR6 C24 H37 SING N N 63 A1AR6 C11 H16 SING N N 64 A1AR6 C11 H15 SING N N 65 A1AR6 C14 H19 SING N N 66 A1AR6 C14 H20 SING N N 67 A1AR6 C16 H22 SING N N 68 A1AR6 C18 H38 SING N N 69 A1AR6 C19 H26 SING N N 70 A1AR6 C19 H27 SING N N 71 A1AR6 C2 H2 SING N N 72 A1AR6 C23 H35 SING N N 73 A1AR6 C23 H34 SING N N 74 A1AR6 C9 H12 SING N N 75 A1AR6 C9 H13 SING N N 76 A1AR6 N4 H25 SING N N 77 A1AR6 N6 H44 SING N N 78 A1AR6 N6 H43 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AR6 SMILES ACDLabs 12.01 "O=C1NCCC1CC(CN)NC(=O)C1CC2(CCCCC2)CN1C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" A1AR6 InChI InChI 1.06 "InChI=1S/C25H40F3N5O4/c1-23(2,3)18(32-22(37)25(26,27)28)21(36)33-14-24(8-5-4-6-9-24)12-17(33)20(35)31-16(13-29)11-15-7-10-30-19(15)34/h15-18H,4-14,29H2,1-3H3,(H,30,34)(H,31,35)(H,32,37)/t15-,16-,17-,18+/m0/s1" A1AR6 InChIKey InChI 1.06 MLNFOXDPMDRARB-XLAORIBOSA-N A1AR6 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@@H](NC(=O)C(F)(F)F)C(=O)N1CC2(CCCCC2)C[C@H]1C(=O)N[C@H](CN)C[C@@H]3CCNC3=O" A1AR6 SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1CC2(CCCCC2)C[CH]1C(=O)N[CH](CN)C[CH]3CCNC3=O" A1AR6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](C(=O)N1CC2(CCCCC2)C[C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)CN)NC(=O)C(F)(F)F" A1AR6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)N1CC2(CCCCC2)CC1C(=O)NC(CC3CCNC3=O)CN)NC(=O)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AR6 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-N-{(2S)-1-amino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-2-[(2R)-3,3-dimethyl-2-(2,2,2-trifluoroacetamido)butanoyl]-2-azaspiro[4.5]decane-3-carboxamide (non-preferred name)" A1AR6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-~{N}-[(2~{S})-1-azanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-2-azaspiro[4.5]decane-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AR6 "Create component" 2024-05-15 RCSB A1AR6 "Modify PCM" 2024-09-27 PDBE A1AR6 "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AR6 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #