data_A1ARA # _chem_comp.id A1ARA _chem_comp.name "tert-butyl (3R)-3-({5-[(Z)-(5-{[(1R)-1-(4-fluorophenyl)ethyl]carbamoyl}-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrol-3-yl}carbamoyl)piperazine-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H39 F N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-13 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 630.709 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BRK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARA C5 C1 C 0 1 Y N N N N N 40.102 -3.245 2.380 3.613 2.419 -0.761 C5 A1ARA 1 A1ARA C7 C2 C 0 1 N N N N N N 41.015 -5.078 3.554 1.668 1.457 0.027 C7 A1ARA 2 A1ARA C8 C3 C 0 1 N N N N N N 41.457 -6.380 3.651 0.766 0.612 0.646 C8 A1ARA 3 A1ARA C10 C4 C 0 1 Y N N N N N 42.795 -8.063 4.765 -1.677 0.110 0.676 C10 A1ARA 4 A1ARA C13 C5 C 0 1 N N N N N N 44.499 -10.637 5.849 -4.476 -0.691 0.108 C13 A1ARA 5 A1ARA C15 C6 C 0 1 N N N N N N 46.776 -13.262 4.738 -7.161 -3.300 -0.077 C15 A1ARA 6 A1ARA C17 C7 C 0 1 N N N N N N 48.137 -13.235 8.152 -9.256 -0.460 -0.430 C17 A1ARA 7 A1ARA C20 C8 C 0 1 N N N N N N 50.049 -11.332 7.641 -12.867 -1.175 -0.202 C20 A1ARA 8 A1ARA C24 C9 C 0 1 N N N N N N 44.410 -6.687 7.867 -3.372 3.367 1.095 C24 A1ARA 9 A1ARA C26 C10 C 0 1 Y N N N N N 40.373 -5.195 1.005 4.027 0.389 0.497 C26 A1ARA 10 A1ARA C28 C11 C 0 1 N N N N N N 40.948 -8.268 -2.667 8.958 -0.912 2.593 C28 A1ARA 11 A1ARA O1 O1 O 0 1 N N N N N N 38.799 -5.201 -2.073 5.941 -1.395 1.462 O1 A1ARA 12 A1ARA N2 N1 N 0 1 N N N N N N 44.687 -9.229 6.016 -4.156 0.415 0.808 N2 A1ARA 13 A1ARA C3 C12 C 0 1 Y N N N N N 39.474 -3.174 0.091 5.864 1.634 -0.462 C3 A1ARA 14 A1ARA O4 O2 O 0 1 N N N N N N 43.434 -11.097 5.723 -3.648 -1.220 -0.603 O4 A1ARA 15 A1ARA N6 N2 N 0 1 N N N N N N 40.922 -6.026 -1.763 7.671 -0.296 0.607 N6 A1ARA 16 A1ARA C9 C13 C 0 1 Y N N N N N 42.062 -6.894 4.915 -0.594 0.974 0.732 C9 A1ARA 17 A1ARA C11 C14 C 0 1 N N N N N N 42.572 -9.066 3.630 -1.621 -1.387 0.511 C11 A1ARA 18 A1ARA C12 C15 C 0 1 Y N N N N N 43.713 -8.181 5.885 -2.832 0.890 0.806 C12 A1ARA 19 A1ARA C14 C16 C 0 1 N N R N N N 45.785 -11.444 5.842 -5.863 -1.272 0.209 C14 A1ARA 20 A1ARA C16 C17 C 0 1 N N N N N N 47.964 -12.994 5.648 -8.168 -2.587 -0.985 C16 A1ARA 21 A1ARA C19 C18 C 0 1 N N N N N N 48.707 -10.129 9.355 -11.742 0.827 -1.185 C19 A1ARA 22 A1ARA C23 C19 C 0 1 Y N N N N N 43.606 -7.009 6.619 -2.446 2.189 0.932 C23 A1ARA 23 A1ARA C27 C20 C 0 1 N N R N N N 41.000 -6.785 -2.999 8.616 -1.276 1.147 C27 A1ARA 24 A1ARA C29 C21 C 0 1 Y N N N N N 42.326 -6.410 -3.665 9.874 -1.271 0.317 C29 A1ARA 25 A1ARA C30 C22 C 0 1 Y N N N N N 43.469 -6.677 -3.062 10.508 -2.463 0.017 C30 A1ARA 26 A1ARA C31 C23 C 0 1 Y N N N N N 44.794 -6.304 -3.724 11.661 -2.460 -0.744 C31 A1ARA 27 A1ARA C32 C24 C 0 1 Y N N N N N 44.795 -5.708 -4.898 12.182 -1.263 -1.206 C32 A1ARA 28 A1ARA C1 C25 C 0 1 N N N N N N 39.764 -5.246 -1.390 6.349 -0.446 0.821 C1 A1ARA 29 A1ARA C18 C26 C 0 1 N N N N N N 49.477 -11.410 9.051 -11.620 -0.291 -0.148 C18 A1ARA 30 A1ARA C2 C27 C 0 1 Y N N N N N 39.857 -4.504 -0.068 5.396 0.542 0.276 C2 A1ARA 31 A1ARA C21 C28 C 0 1 N N N N N N 50.637 -11.548 10.036 -11.488 0.321 1.248 C21 A1ARA 32 A1ARA C22 C29 C 0 1 N N N N N N 46.507 -11.563 7.162 -6.817 -0.475 -0.688 C22 A1ARA 33 A1ARA C25 C30 C 0 1 Y N N N N N 40.497 -4.574 2.227 3.142 1.323 -0.019 C25 A1ARA 34 A1ARA C33 C31 C 0 1 Y N N N N N 43.472 -5.392 -5.594 11.547 -0.070 -0.905 C33 A1ARA 35 A1ARA C34 C32 C 0 1 Y N N N N N 42.331 -5.714 -5.023 10.390 -0.076 -0.148 C34 A1ARA 36 A1ARA C4 C33 C 0 1 Y N N N N N 39.588 -2.537 1.323 4.983 2.560 -0.973 C4 A1ARA 37 A1ARA C6 C34 C 0 1 N N N N N N 40.894 -3.924 4.505 1.372 2.676 -0.735 C6 A1ARA 38 A1ARA F1 F1 F 0 1 N N N N N N 45.978 -5.371 -5.495 13.310 -1.258 -1.950 F1 A1ARA 39 A1ARA N1 N3 N 0 1 N N N N N N 40.337 -2.819 3.764 2.537 3.192 -1.164 N1 A1ARA 40 A1ARA N3 N4 N 0 1 N N N N N N 45.556 -12.764 5.280 -5.841 -2.674 -0.228 N3 A1ARA 41 A1ARA N4 N5 N 0 1 N N N N N N 47.536 -12.595 6.992 -8.126 -1.147 -0.690 N4 A1ARA 42 A1ARA N5 N6 N 0 1 Y N N N N N 42.533 -6.272 6.083 -1.089 2.251 0.888 N5 A1ARA 43 A1ARA O2 O3 O 0 1 N N N N N N 48.605 -12.493 9.248 -10.444 -1.093 -0.437 O2 A1ARA 44 A1ARA O3 O4 O 0 1 N N N N N N 48.219 -14.419 8.175 -9.202 0.729 -0.188 O3 A1ARA 45 A1ARA O5 O5 O 0 1 N N N N N N 41.254 -3.939 5.856 0.265 3.139 -0.943 O5 A1ARA 46 A1ARA H4 H1 H 0 1 N N N N N N 41.364 -7.038 2.800 1.103 -0.325 1.064 H4 A1ARA 47 A1ARA H11 H2 H 0 1 N N N N N N 46.681 -14.348 4.591 -7.486 -3.218 0.961 H11 A1ARA 48 A1ARA H12 H3 H 0 1 N N N N N N 46.957 -12.776 3.768 -7.100 -4.352 -0.357 H12 A1ARA 49 A1ARA H19 H4 H 0 1 N N N N N N 50.719 -10.463 7.564 -12.960 -1.611 -1.196 H19 A1ARA 50 A1ARA H18 H5 H 0 1 N N N N N N 50.614 -12.251 7.423 -12.780 -1.972 0.537 H18 A1ARA 51 A1ARA H20 H6 H 0 1 N N N N N N 49.227 -11.226 6.917 -13.749 -0.573 0.016 H20 A1ARA 52 A1ARA H28 H7 H 0 1 N N N N N N 43.900 -7.102 8.749 -3.486 3.595 2.155 H28 A1ARA 53 A1ARA H26 H8 H 0 1 N N N N N N 45.413 -7.130 7.781 -2.954 4.232 0.580 H26 A1ARA 54 A1ARA H27 H9 H 0 1 N N N N N N 44.499 -5.596 7.974 -4.346 3.125 0.669 H27 A1ARA 55 A1ARA H30 H10 H 0 1 N N N N N N 40.680 -6.224 0.888 3.659 -0.452 1.066 H30 A1ARA 56 A1ARA H34 H11 H 0 1 N N N N N N 41.006 -8.854 -3.596 8.048 -0.915 3.194 H34 A1ARA 57 A1ARA H33 H12 H 0 1 N N N N N N 41.796 -8.528 -2.016 9.661 -1.641 2.996 H33 A1ARA 58 A1ARA H35 H13 H 0 1 N N N N N N 40.005 -8.495 -2.149 9.408 0.081 2.621 H35 A1ARA 59 A1ARA H8 H14 H 0 1 N N N N N N 45.613 -8.937 6.254 -4.839 0.884 1.313 H8 A1ARA 60 A1ARA H1 H15 H 0 1 N N N N N N 39.082 -2.629 -0.755 6.924 1.752 -0.632 H1 A1ARA 61 A1ARA H31 H16 H 0 1 N N N N N N 41.705 -6.044 -1.142 7.997 0.461 0.095 H31 A1ARA 62 A1ARA H6 H17 H 0 1 N N N N N N 43.232 -8.818 2.786 -1.508 -1.633 -0.545 H6 A1ARA 63 A1ARA H5 H18 H 0 1 N N N N N N 42.800 -10.081 3.988 -0.772 -1.782 1.069 H5 A1ARA 64 A1ARA H7 H19 H 0 1 N N N N N N 41.523 -9.020 3.301 -2.542 -1.829 0.891 H7 A1ARA 65 A1ARA H9 H20 H 0 1 N N N N N N 46.472 -10.920 5.161 -6.206 -1.218 1.243 H9 A1ARA 66 A1ARA H13 H21 H 0 1 N N N N N N 48.572 -12.187 5.213 -7.903 -2.755 -2.029 H13 A1ARA 67 A1ARA H14 H22 H 0 1 N N N N N N 48.569 -13.909 5.723 -9.170 -2.973 -0.796 H14 A1ARA 68 A1ARA H15 H23 H 0 1 N N N N N N 49.366 -9.261 9.209 -12.625 1.429 -0.968 H15 A1ARA 69 A1ARA H17 H24 H 0 1 N N N N N N 47.843 -10.051 8.678 -10.854 1.458 -1.147 H17 A1ARA 70 A1ARA H16 H25 H 0 1 N N N N N N 48.356 -10.151 10.397 -11.836 0.391 -2.180 H16 A1ARA 71 A1ARA H32 H26 H 0 1 N N N N N N 40.166 -6.525 -3.667 8.166 -2.269 1.119 H32 A1ARA 72 A1ARA H36 H27 H 0 1 N N N N N N 43.468 -7.161 -2.097 10.102 -3.396 0.378 H36 A1ARA 73 A1ARA H37 H28 H 0 1 N N N N N N 45.728 -6.529 -3.230 12.156 -3.391 -0.979 H37 A1ARA 74 A1ARA H22 H29 H 0 1 N N N N N N 51.335 -10.709 9.901 -12.371 0.923 1.466 H22 A1ARA 75 A1ARA H21 H30 H 0 1 N N N N N N 50.247 -11.538 11.065 -11.401 -0.475 1.987 H21 A1ARA 76 A1ARA H23 H31 H 0 1 N N N N N N 51.163 -12.496 9.852 -10.600 0.951 1.287 H23 A1ARA 77 A1ARA H24 H32 H 0 1 N N N N N N 45.802 -11.858 7.954 -6.926 0.537 -0.299 H24 A1ARA 78 A1ARA H25 H33 H 0 1 N N N N N N 46.974 -10.603 7.426 -6.420 -0.438 -1.702 H25 A1ARA 79 A1ARA H38 H34 H 0 1 N N N N N N 43.473 -4.903 -6.557 11.952 0.864 -1.264 H38 A1ARA 80 A1ARA H39 H35 H 0 1 N N N N N N 41.398 -5.486 -5.516 9.892 0.854 0.084 H39 A1ARA 81 A1ARA H2 H36 H 0 1 N N N N N N 39.279 -1.509 1.444 5.355 3.399 -1.542 H2 A1ARA 82 A1ARA H3 H37 H 0 1 N N N N N N 40.143 -1.910 4.134 2.614 4.003 -1.690 H3 A1ARA 83 A1ARA H10 H38 H 0 1 N N N N N N 45.232 -13.381 5.997 -5.511 -2.751 -1.178 H10 A1ARA 84 A1ARA H29 H40 H 0 1 N N N N N N 42.161 -5.431 6.475 -0.557 3.059 0.957 H29 A1ARA 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARA C1 O1 DOUB N N 1 A1ARA C1 C2 SING N N 2 A1ARA C1 N6 SING N N 3 A1ARA N1 C5 SING N N 4 A1ARA N1 C6 SING N N 5 A1ARA C2 C3 DOUB Y N 6 A1ARA C2 C26 SING Y N 7 A1ARA N2 C12 SING N N 8 A1ARA N2 C13 SING N N 9 A1ARA O2 C17 SING N N 10 A1ARA O2 C18 SING N N 11 A1ARA C3 C4 SING Y N 12 A1ARA N3 C14 SING N N 13 A1ARA N3 C15 SING N N 14 A1ARA O3 C17 DOUB N N 15 A1ARA C4 C5 DOUB Y N 16 A1ARA N4 C16 SING N N 17 A1ARA N4 C17 SING N N 18 A1ARA N4 C22 SING N N 19 A1ARA O4 C13 DOUB N N 20 A1ARA C5 C25 SING Y N 21 A1ARA N5 C9 SING Y N 22 A1ARA N5 C23 SING Y N 23 A1ARA O5 C6 DOUB N N 24 A1ARA C6 C7 SING N N 25 A1ARA N6 C27 SING N N 26 A1ARA C7 C8 DOUB N Z 27 A1ARA C7 C25 SING N N 28 A1ARA C8 C9 SING N N 29 A1ARA C9 C10 DOUB Y N 30 A1ARA C10 C11 SING N N 31 A1ARA C10 C12 SING Y N 32 A1ARA C12 C23 DOUB Y N 33 A1ARA C13 C14 SING N N 34 A1ARA C14 C22 SING N N 35 A1ARA C15 C16 SING N N 36 A1ARA C18 C19 SING N N 37 A1ARA C18 C20 SING N N 38 A1ARA C18 C21 SING N N 39 A1ARA C23 C24 SING N N 40 A1ARA C25 C26 DOUB Y N 41 A1ARA C27 C28 SING N N 42 A1ARA C27 C29 SING N N 43 A1ARA C29 C30 DOUB Y N 44 A1ARA C29 C34 SING Y N 45 A1ARA C30 C31 SING Y N 46 A1ARA C31 C32 DOUB Y N 47 A1ARA C32 C33 SING Y N 48 A1ARA C32 F1 SING N N 49 A1ARA C33 C34 DOUB Y N 50 A1ARA C8 H4 SING N N 51 A1ARA C15 H11 SING N N 52 A1ARA C15 H12 SING N N 53 A1ARA C20 H19 SING N N 54 A1ARA C20 H18 SING N N 55 A1ARA C20 H20 SING N N 56 A1ARA C24 H28 SING N N 57 A1ARA C24 H26 SING N N 58 A1ARA C24 H27 SING N N 59 A1ARA C26 H30 SING N N 60 A1ARA C28 H34 SING N N 61 A1ARA C28 H33 SING N N 62 A1ARA C28 H35 SING N N 63 A1ARA N2 H8 SING N N 64 A1ARA C3 H1 SING N N 65 A1ARA N6 H31 SING N N 66 A1ARA C11 H6 SING N N 67 A1ARA C11 H5 SING N N 68 A1ARA C11 H7 SING N N 69 A1ARA C14 H9 SING N N 70 A1ARA C16 H13 SING N N 71 A1ARA C16 H14 SING N N 72 A1ARA C19 H15 SING N N 73 A1ARA C19 H17 SING N N 74 A1ARA C19 H16 SING N N 75 A1ARA C27 H32 SING N N 76 A1ARA C30 H36 SING N N 77 A1ARA C31 H37 SING N N 78 A1ARA C21 H22 SING N N 79 A1ARA C21 H21 SING N N 80 A1ARA C21 H23 SING N N 81 A1ARA C22 H24 SING N N 82 A1ARA C22 H25 SING N N 83 A1ARA C33 H38 SING N N 84 A1ARA C34 H39 SING N N 85 A1ARA C4 H2 SING N N 86 A1ARA N1 H3 SING N N 87 A1ARA N3 H10 SING N N 88 A1ARA N5 H29 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARA SMILES ACDLabs 12.01 "Fc1ccc(cc1)C(C)NC(=O)c1ccc2NC(=O)C(=C/c3[NH]c(C)c(NC(=O)C4CN(CCN4)C(=O)OC(C)(C)C)c3C)\c2c1" A1ARA InChI InChI 1.06 "InChI=1S/C34H39FN6O5/c1-18-27(37-20(3)29(18)40-32(44)28-17-41(14-13-36-28)33(45)46-34(4,5)6)16-25-24-15-22(9-12-26(24)39-31(25)43)30(42)38-19(2)21-7-10-23(35)11-8-21/h7-12,15-16,19,28,36-37H,13-14,17H2,1-6H3,(H,38,42)(H,39,43)(H,40,44)/t19-,28-/m1/s1" A1ARA InChIKey InChI 1.06 BISREQDPCIZZMG-WHLCRQNOSA-N A1ARA SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1ccc2NC(=O)C(=C\c3[nH]c(C)c(NC(=O)[C@H]4CN(CCN4)C(=O)OC(C)(C)C)c3C)/c2c1)c5ccc(F)cc5" A1ARA SMILES CACTVS 3.385 "C[CH](NC(=O)c1ccc2NC(=O)C(=Cc3[nH]c(C)c(NC(=O)[CH]4CN(CCN4)C(=O)OC(C)(C)C)c3C)c2c1)c5ccc(F)cc5" A1ARA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c([nH]c(c1NC(=O)[C@H]2CN(CCN2)C(=O)OC(C)(C)C)C)/C=C\3/c4cc(ccc4NC3=O)C(=O)N[C@H](C)c5ccc(cc5)F" A1ARA SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c([nH]c(c1NC(=O)C2CN(CCN2)C(=O)OC(C)(C)C)C)C=C3c4cc(ccc4NC3=O)C(=O)NC(C)c5ccc(cc5)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARA "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl (3R)-3-({5-[(Z)-(5-{[(1R)-1-(4-fluorophenyl)ethyl]carbamoyl}-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrol-3-yl}carbamoyl)piperazine-1-carboxylate" A1ARA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl (3~{R})-3-[[5-[(~{Z})-[5-[[(1~{R})-1-(4-fluorophenyl)ethyl]carbamoyl]-2-oxidanylidene-1~{H}-indol-3-ylidene]methyl]-2,4-dimethyl-1~{H}-pyrrol-3-yl]carbamoyl]piperazine-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARA "Create component" 2024-05-13 RCSB A1ARA "Initial release" 2025-11-12 RCSB #