data_A1ARF # _chem_comp.id A1ARF _chem_comp.name "(3Z)-3-[(4-{[(2R)-2-methoxypropyl]carbamoyl}-3,5-dimethyl-1H-pyrrol-2-yl)methylidene]-2-oxo-N-[(1R)-1-phenylethyl]-3,7-dihydro-2H-indole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H32 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-13 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.589 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BRP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARF C10 C1 C 0 1 N N N N N N 4.598 40.766 -17.355 -4.366 -1.842 -0.239 C10 A1ARF 1 A1ARF C13 C2 C 0 1 N N N N N N 3.378 40.350 -16.815 -4.713 -3.149 -0.204 C13 A1ARF 2 A1ARF C15 C3 C 0 1 N N N N N N 3.996 41.345 -14.672 -2.201 -3.724 0.078 C15 A1ARF 3 A1ARF C17 C4 C 0 1 N N N N N N 5.500 41.458 -16.554 -2.971 -1.426 -0.121 C17 A1ARF 4 A1ARF C20 C5 C 0 1 N N N N N N 5.881 42.415 -14.178 -0.480 -2.186 0.169 C20 A1ARF 5 A1ARF C22 C6 C 0 1 N N N N N N 7.086 42.929 -14.376 0.266 -1.027 0.181 C22 A1ARF 6 A1ARF C26 C7 C 0 1 Y N N N N N 9.666 44.666 -12.360 3.848 -0.660 0.519 C26 A1ARF 7 A1ARF C28 C8 C 0 1 N N N N N N 10.111 43.685 -14.730 2.152 0.992 1.610 C28 A1ARF 8 A1ARF C01 C9 C 0 1 Y N N N N N 6.696 42.675 -23.660 -3.906 4.411 0.333 C01 A1ARF 9 A1ARF C02 C10 C 0 1 Y N N N N N 6.478 43.909 -23.071 -4.780 5.208 1.047 C02 A1ARF 10 A1ARF C03 C11 C 0 1 Y N N N N N 6.333 44.001 -21.696 -6.091 4.807 1.226 C03 A1ARF 11 A1ARF C04 C12 C 0 1 Y N N N N N 6.407 42.861 -20.911 -6.527 3.610 0.691 C04 A1ARF 12 A1ARF C05 C13 C 0 1 Y N N N N N 6.625 41.627 -21.500 -5.653 2.813 -0.023 C05 A1ARF 13 A1ARF C06 C14 C 0 1 Y N N N N N 6.768 41.535 -22.874 -4.343 3.216 -0.207 C06 A1ARF 14 A1ARF C07 C15 C 0 1 N N R N N N 6.699 40.360 -20.649 -6.128 1.507 -0.606 C07 A1ARF 15 A1ARF C09 C16 C 0 1 N N N N N N 4.965 40.465 -18.809 -5.418 -0.815 -0.405 C09 A1ARF 16 A1ARF C12 C17 C 0 1 N N N N N N 8.111 39.784 -20.705 -6.428 1.693 -2.095 C12 A1ARF 17 A1ARF C14 C18 C 0 1 N N N N N N 3.068 40.635 -15.484 -3.635 -4.195 -0.040 C14 A1ARF 18 A1ARF C16 C19 C 0 1 N N N N N N 5.185 41.746 -15.203 -1.951 -2.329 0.029 C16 A1ARF 19 A1ARF C19 C20 C 0 1 N N N N N N 5.073 42.394 -13.047 -0.004 -3.578 0.290 C19 A1ARF 20 A1ARF C23 C21 C 0 1 Y N N N N N 7.923 43.677 -13.328 1.677 -1.094 0.168 C23 A1ARF 21 A1ARF C25 C22 C 0 1 Y N N N N N 8.552 44.729 -11.532 3.739 -1.800 -0.257 C25 A1ARF 22 A1ARF C27 C23 C 0 1 Y N N N N N 9.260 44.001 -13.506 2.538 -0.214 0.793 C27 A1ARF 23 A1ARF C29 C24 C 0 1 N N N N N N 8.488 45.356 -10.141 4.890 -2.616 -0.785 C29 A1ARF 24 A1ARF C30 C25 C 0 1 N N N N N N 11.079 45.221 -12.122 5.100 -0.033 0.980 C30 A1ARF 25 A1ARF C33 C26 C 0 1 N N N N N N 12.639 47.012 -11.287 6.940 1.537 0.686 C33 A1ARF 26 A1ARF C34 C27 C 0 1 N N R N N N 13.147 46.741 -9.874 7.403 2.570 -0.344 C34 A1ARF 27 A1ARF C36 C28 C 0 1 N N N N N N 15.209 47.873 -10.135 7.397 2.760 -2.733 C36 A1ARF 28 A1ARF C37 C29 C 0 1 N N N N N N 12.587 45.419 -9.359 8.702 3.221 0.134 C37 A1ARF 29 A1ARF N08 N1 N 0 1 N N N N N N 6.340 40.641 -19.264 -5.086 0.490 -0.442 N08 A1ARF 30 A1ARF N18 N2 N 0 1 N N N N N N 3.950 41.748 -13.367 -1.078 -4.380 0.226 N18 A1ARF 31 A1ARF N24 N3 N 0 1 Y N N N N N 7.548 44.125 -12.144 2.437 -2.058 -0.462 N24 A1ARF 32 A1ARF N31 N4 N 0 1 N N N N N N 11.285 46.515 -11.485 5.696 0.914 0.228 N31 A1ARF 33 A1ARF O11 O1 O 0 1 N N N N N N 4.130 40.107 -19.563 -6.582 -1.150 -0.509 O11 A1ARF 34 A1ARF O21 O2 O 0 1 N N N N N N 5.316 42.857 -11.985 1.155 -3.934 0.425 O21 A1ARF 35 A1ARF O32 O3 O 0 1 N N N N N N 12.022 44.589 -12.470 5.595 -0.369 2.039 O32 A1ARF 36 A1ARF O35 O4 O 0 1 N N N N N N 14.547 46.666 -9.884 7.627 1.923 -1.599 O35 A1ARF 37 A1ARF H131 H1 H 0 0 N N N N N N 2.674 39.807 -17.428 -5.749 -3.441 -0.292 H131 A1ARF 38 A1ARF H171 H2 H 0 0 N N N N N N 6.446 41.778 -16.964 -2.736 -0.372 -0.154 H171 A1ARF 39 A1ARF H221 H3 H 0 0 N N N N N N 7.517 42.812 -15.359 -0.228 -0.067 0.201 H221 A1ARF 40 A1ARF H281 H4 H 0 0 N N N N N N 10.593 42.705 -14.599 2.080 1.864 0.959 H281 A1ARF 41 A1ARF H282 H5 H 0 0 N N N N N N 9.472 43.663 -15.625 1.188 0.814 2.087 H282 A1ARF 42 A1ARF H283 H6 H 0 0 N N N N N N 10.883 44.460 -14.850 2.908 1.171 2.374 H283 A1ARF 43 A1ARF H011 H7 H 0 0 N N N N N N 6.810 42.600 -24.731 -2.882 4.724 0.193 H011 A1ARF 44 A1ARF H021 H8 H 0 0 N N N N N N 6.421 44.798 -23.682 -4.440 6.144 1.465 H021 A1ARF 45 A1ARF H031 H9 H 0 0 N N N N N N 6.162 44.963 -21.235 -6.775 5.430 1.785 H031 A1ARF 46 A1ARF H041 H10 H 0 0 N N N N N N 6.295 42.935 -19.839 -7.551 3.296 0.832 H041 A1ARF 47 A1ARF H061 H11 H 0 0 N N N N N N 6.936 40.573 -23.335 -3.660 2.593 -0.765 H061 A1ARF 48 A1ARF H071 H12 H 0 0 N N N N N N 6.001 39.618 -21.065 -7.033 1.186 -0.090 H071 A1ARF 49 A1ARF H122 H13 H 0 0 N N N N N N 8.160 38.872 -20.091 -5.523 2.013 -2.611 H122 A1ARF 50 A1ARF H123 H14 H 0 0 N N N N N N 8.366 39.539 -21.747 -6.772 0.748 -2.517 H123 A1ARF 51 A1ARF H121 H15 H 0 0 N N N N N N 8.825 40.526 -20.318 -7.204 2.449 -2.217 H121 A1ARF 52 A1ARF H141 H16 H 0 0 N N N N N N 2.139 41.224 -15.494 -3.869 -4.776 0.852 H141 A1ARF 53 A1ARF H1 H17 H 0 1 N N N N N N 2.885 39.671 -14.987 -3.694 -4.870 -0.895 H1 A1ARF 54 A1ARF H291 H18 H 0 0 N N N N N N 8.748 44.600 -9.385 5.148 -3.391 -0.063 H291 A1ARF 55 A1ARF H293 H19 H 0 0 N N N N N N 9.200 46.192 -10.083 4.603 -3.081 -1.729 H293 A1ARF 56 A1ARF H292 H20 H 0 0 N N N N N N 7.470 45.728 -9.953 5.752 -1.968 -0.947 H292 A1ARF 57 A1ARF H332 H21 H 0 0 N N N N N N 13.308 46.516 -12.006 7.708 0.773 0.804 H332 A1ARF 58 A1ARF H331 H22 H 0 0 N N N N N N 12.648 48.097 -11.466 6.769 2.030 1.643 H331 A1ARF 59 A1ARF H341 H23 H 0 0 N N N N N N 12.808 47.552 -9.213 6.635 3.334 -0.462 H341 A1ARF 60 A1ARF H362 H24 H 0 0 N N N N N N 16.296 47.705 -10.121 6.362 3.102 -2.729 H362 A1ARF 61 A1ARF H363 H25 H 0 0 N N N N N N 14.910 48.257 -11.122 8.065 3.621 -2.691 H363 A1ARF 62 A1ARF H361 H26 H 0 0 N N N N N N 14.941 48.606 -9.360 7.590 2.196 -3.646 H361 A1ARF 63 A1ARF H373 H27 H 0 0 N N N N N N 12.960 45.234 -8.341 8.530 3.714 1.091 H373 A1ARF 64 A1ARF H371 H28 H 0 0 N N N N N N 11.488 45.467 -9.344 9.469 2.456 0.252 H371 A1ARF 65 A1ARF H372 H29 H 0 0 N N N N N N 12.909 44.602 -10.021 9.031 3.956 -0.600 H372 A1ARF 66 A1ARF H081 H30 H 0 0 N N N N N N 7.040 40.956 -18.623 -4.157 0.757 -0.359 H081 A1ARF 67 A1ARF H2 H31 H 0 1 N N N N N N 6.630 44.021 -11.762 2.086 -2.802 -0.978 H2 A1ARF 68 A1ARF H311 H32 H 0 0 N N N N N N 10.501 47.059 -11.186 5.301 1.182 -0.616 H311 A1ARF 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARF C01 C02 DOUB Y N 1 A1ARF C02 C03 SING Y N 2 A1ARF C03 C04 DOUB Y N 3 A1ARF C04 C05 SING Y N 4 A1ARF C05 C06 DOUB Y N 5 A1ARF C06 C01 SING Y N 6 A1ARF C05 C07 SING N N 7 A1ARF C07 N08 SING N N 8 A1ARF N08 C09 SING N N 9 A1ARF C09 C10 SING N N 10 A1ARF C09 O11 DOUB N N 11 A1ARF C07 C12 SING N N 12 A1ARF C10 C13 DOUB N N 13 A1ARF C13 C14 SING N N 14 A1ARF C14 C15 SING N N 15 A1ARF C15 C16 SING N N 16 A1ARF C16 C17 DOUB N N 17 A1ARF C17 C10 SING N N 18 A1ARF C15 N18 DOUB N N 19 A1ARF N18 C19 SING N N 20 A1ARF C19 C20 SING N N 21 A1ARF C20 C16 SING N N 22 A1ARF C19 O21 DOUB N N 23 A1ARF C20 C22 DOUB N Z 24 A1ARF C22 C23 SING N N 25 A1ARF C23 N24 SING Y N 26 A1ARF N24 C25 SING Y N 27 A1ARF C25 C26 DOUB Y N 28 A1ARF C26 C27 SING Y N 29 A1ARF C27 C23 DOUB Y N 30 A1ARF C27 C28 SING N N 31 A1ARF C25 C29 SING N N 32 A1ARF C26 C30 SING N N 33 A1ARF C30 N31 SING N N 34 A1ARF C30 O32 DOUB N N 35 A1ARF N31 C33 SING N N 36 A1ARF C33 C34 SING N N 37 A1ARF C34 O35 SING N N 38 A1ARF O35 C36 SING N N 39 A1ARF C34 C37 SING N N 40 A1ARF C13 H131 SING N N 41 A1ARF C17 H171 SING N N 42 A1ARF C22 H221 SING N N 43 A1ARF C28 H281 SING N N 44 A1ARF C28 H282 SING N N 45 A1ARF C28 H283 SING N N 46 A1ARF C01 H011 SING N N 47 A1ARF C02 H021 SING N N 48 A1ARF C03 H031 SING N N 49 A1ARF C04 H041 SING N N 50 A1ARF C06 H061 SING N N 51 A1ARF C07 H071 SING N N 52 A1ARF C12 H122 SING N N 53 A1ARF C12 H123 SING N N 54 A1ARF C12 H121 SING N N 55 A1ARF C14 H141 SING N N 56 A1ARF C14 H1 SING N N 57 A1ARF C29 H291 SING N N 58 A1ARF C29 H293 SING N N 59 A1ARF C29 H292 SING N N 60 A1ARF C33 H332 SING N N 61 A1ARF C33 H331 SING N N 62 A1ARF C34 H341 SING N N 63 A1ARF C36 H362 SING N N 64 A1ARF C36 H363 SING N N 65 A1ARF C36 H361 SING N N 66 A1ARF C37 H373 SING N N 67 A1ARF C37 H371 SING N N 68 A1ARF C37 H372 SING N N 69 A1ARF N08 H081 SING N N 70 A1ARF N24 H2 SING N N 71 A1ARF N31 H311 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARF SMILES ACDLabs 12.01 "CC(OC)CNC(=O)c1c(C)[NH]c(/C=C2\C(=O)N=C3CC=C(C=C23)C(=O)NC(C)c2ccccc2)c1C" A1ARF InChI InChI 1.06 "InChI=1S/C29H32N4O4/c1-16(37-5)15-30-29(36)26-17(2)25(31-19(26)4)14-23-22-13-21(11-12-24(22)33-28(23)35)27(34)32-18(3)20-9-7-6-8-10-20/h6-11,13-14,16,18,31H,12,15H2,1-5H3,(H,30,36)(H,32,34)/b23-14-/t16-,18-/m1/s1" A1ARF InChIKey InChI 1.06 KCTMKOYMOWPPFA-ZNAXHXMPSA-N A1ARF SMILES_CANONICAL CACTVS 3.385 "CO[C@H](C)CNC(=O)c1c(C)[nH]c(/C=C/2C(=O)N=C3CC=C(C=C/23)C(=O)N[C@H](C)c4ccccc4)c1C" A1ARF SMILES CACTVS 3.385 "CO[CH](C)CNC(=O)c1c(C)[nH]c(C=C2C(=O)N=C3CC=C(C=C23)C(=O)N[CH](C)c4ccccc4)c1C" A1ARF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c([nH]c(c1C(=O)NC[C@@H](C)OC)C)/C=C\2/C3=CC(=CCC3=NC2=O)C(=O)N[C@H](C)c4ccccc4" A1ARF SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c([nH]c(c1C(=O)NCC(C)OC)C)C=C2C3=CC(=CCC3=NC2=O)C(=O)NC(C)c4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARF "SYSTEMATIC NAME" ACDLabs 12.01 "(3Z)-3-[(4-{[(2R)-2-methoxypropyl]carbamoyl}-3,5-dimethyl-1H-pyrrol-2-yl)methylidene]-2-oxo-N-[(1R)-1-phenylethyl]-3,7-dihydro-2H-indole-5-carboxamide" A1ARF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{Z})-3-[[4-[[(2~{R})-2-methoxypropyl]carbamoyl]-3,5-dimethyl-1~{H}-pyrrol-2-yl]methylidene]-2-oxidanylidene-~{N}-[(1~{R})-1-phenylethyl]-7~{H}-indole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARF "Create component" 2024-05-13 RCSB A1ARF "Initial release" 2025-11-12 RCSB #