data_A1ARG # _chem_comp.id A1ARG _chem_comp.name "O-tert-butyl-N-[(cyclopropylmethoxy)carbonyl]-L-threonyl-3-cyclohexyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H50 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-13 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.730 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BQL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARG N N1 N 0 1 N N N N N N -9.520 -15.486 -17.768 -0.096 -0.069 -1.014 N A1ARG 1 A1ARG C C1 C 0 1 N N S N N N -10.166 -17.743 -18.081 -2.474 0.577 -0.793 C A1ARG 2 A1ARG O O1 O 0 1 N N N N N N -10.710 -16.482 -16.130 -1.271 -0.755 0.739 O A1ARG 3 A1ARG C1 C2 C 0 1 N N N N N N -10.178 -16.509 -17.235 -1.238 -0.130 -0.300 C1 A1ARG 4 A1ARG C10 C3 C 0 1 N N N N N N -14.711 -15.840 -14.707 6.870 0.088 1.851 C10 A1ARG 5 A1ARG C11 C4 C 0 1 N N N N N N -8.848 -13.201 -18.141 1.069 -2.219 -0.983 C11 A1ARG 6 A1ARG C12 C5 C 0 1 N N N N N N -7.477 -12.831 -17.572 -0.104 -2.932 -0.305 C12 A1ARG 7 A1ARG C13 C6 C 0 1 N N R N N N -11.529 -18.373 -18.374 -2.190 2.077 -0.910 C13 A1ARG 8 A1ARG C14 C7 C 0 1 N N N N N N -12.455 -17.329 -18.996 -3.478 2.811 -1.290 C14 A1ARG 9 A1ARG C15 C8 C 0 1 N N N N N N -8.162 -18.953 -17.880 -4.849 0.437 -0.269 C15 A1ARG 10 A1ARG C16 C9 C 0 1 N N N N N N -6.275 -20.463 -17.858 -7.208 0.336 0.076 C16 A1ARG 11 A1ARG C17 C10 C 0 1 N N N N N N -11.928 -20.732 -18.997 -0.667 3.536 0.228 C17 A1ARG 12 A1ARG C18 C11 C 0 1 N N N N N N -13.403 -20.604 -18.631 -1.124 4.676 -0.685 C18 A1ARG 13 A1ARG C19 C12 C 0 1 N N N N N N -11.182 -21.400 -17.853 0.576 2.872 -0.368 C19 A1ARG 14 A1ARG C2 C13 C 0 1 N N S N N N -9.658 -14.139 -17.246 1.105 -0.757 -0.534 C2 A1ARG 15 A1ARG C20 C14 C 0 1 N N N N N N -11.843 -21.609 -20.239 -0.332 4.095 1.612 C20 A1ARG 16 A1ARG C21 C15 C 0 1 N N N N N N -6.471 -12.718 -18.718 0.132 -2.978 1.206 C21 A1ARG 17 A1ARG C22 C16 C 0 1 N N N N N N -5.088 -12.337 -18.197 -1.040 -3.690 1.883 C22 A1ARG 18 A1ARG C23 C17 C 0 1 N N N N N N -4.634 -13.350 -17.159 -1.152 -5.116 1.341 C23 A1ARG 19 A1ARG C24 C18 C 0 1 N N N N N N -5.615 -13.483 -16.002 -1.388 -5.070 -0.170 C24 A1ARG 20 A1ARG C25 C19 C 0 1 N N N N N N -6.993 -13.845 -16.541 -0.216 -4.358 -0.848 C25 A1ARG 21 A1ARG C26 C20 C 0 1 N N N N N N -5.322 -20.956 -16.796 -8.212 0.079 1.202 C26 A1ARG 22 A1ARG C27 C21 C 0 1 N N N N N N -5.689 -20.401 -15.429 -9.117 -1.148 1.076 C27 A1ARG 23 A1ARG C28 C22 C 0 1 N N N N N N -4.640 -19.693 -16.285 -9.697 0.254 0.878 C28 A1ARG 24 A1ARG C3 C23 C 0 1 N N N N N N -11.104 -13.734 -17.290 2.329 -0.087 -1.104 C3 A1ARG 25 A1ARG C4 C24 C 0 1 N N S N N N -13.023 -12.742 -16.281 4.746 0.099 -1.351 C4 A1ARG 26 A1ARG C5 C25 C 0 1 N N N N N N -13.003 -11.251 -15.942 5.012 -0.437 -2.759 C5 A1ARG 27 A1ARG C6 C26 C 0 1 N N N N N N -13.911 -13.527 -15.316 5.952 -0.196 -0.457 C6 A1ARG 28 A1ARG C7 C27 C 0 1 N N S N N N -13.943 -15.007 -15.699 5.744 0.458 0.911 C7 A1ARG 29 A1ARG C8 C28 C 0 1 N N N N N N -14.680 -15.258 -17.010 5.836 1.997 0.795 C8 A1ARG 30 A1ARG C9 C29 C 0 1 N N N N N N -15.483 -16.532 -16.758 6.537 2.371 2.120 C9 A1ARG 31 A1ARG N1 N2 N 0 1 N N N N N N -11.661 -13.251 -16.181 3.556 -0.552 -0.798 N1 A1ARG 32 A1ARG N2 N3 N 0 1 N N N N N N -15.603 -16.613 -15.315 7.295 1.177 2.514 N2 A1ARG 33 A1ARG N3 N4 N 0 1 N N N N N N -9.340 -18.672 -17.378 -3.571 0.360 0.152 N3 A1ARG 34 A1ARG O1 O2 O 0 1 N N N N N N -11.753 -13.857 -18.318 2.210 0.871 -1.838 O1 A1ARG 35 A1ARG O2 O3 O 0 1 N N N N N N -14.287 -10.639 -16.046 5.341 -1.826 -2.686 O2 A1ARG 36 A1ARG O3 O4 O 0 1 N N N N N N -14.503 -15.803 -13.504 7.321 -1.030 1.989 O3 A1ARG 37 A1ARG O4 O5 O 0 1 N N N N N N -11.324 -19.460 -19.297 -1.713 2.570 0.344 O4 A1ARG 38 A1ARG O5 O6 O 0 1 N N N N N N -7.375 -19.909 -17.154 -5.858 0.237 0.600 O5 A1ARG 39 A1ARG O6 O7 O 0 1 N N N N N N -7.710 -18.466 -18.909 -5.091 0.687 -1.434 O6 A1ARG 40 A1ARG HN H1 H 0 1 N N N N N N -8.915 -15.648 -18.548 -0.071 0.428 -1.847 HN A1ARG 41 A1ARG H0 H2 H 0 1 N N N N N N -9.694 -17.497 -19.044 -2.752 0.184 -1.771 H0 A1ARG 42 A1ARG H111 H3 H 0 0 N N N N N N -8.698 -13.694 -19.113 2.002 -2.708 -0.703 H111 A1ARG 43 A1ARG H112 H4 H 0 0 N N N N N N -9.425 -12.275 -18.284 0.945 -2.264 -2.065 H112 A1ARG 44 A1ARG H12 H5 H 0 1 N N N N N N -7.558 -11.849 -17.083 -1.026 -2.390 -0.512 H12 A1ARG 45 A1ARG H13 H6 H 0 1 N N N N N N -11.970 -18.740 -17.436 -1.436 2.245 -1.678 H13 A1ARG 46 A1ARG H142 H7 H 0 0 N N N N N N -13.434 -17.785 -19.206 -4.230 2.650 -0.517 H142 A1ARG 47 A1ARG H143 H8 H 0 0 N N N N N N -12.584 -16.490 -18.297 -3.274 3.878 -1.382 H143 A1ARG 48 A1ARG H141 H9 H 0 0 N N N N N N -12.014 -16.960 -19.934 -3.847 2.428 -2.241 H141 A1ARG 49 A1ARG H161 H10 H 0 0 N N N N N N -6.607 -21.297 -18.494 -7.348 -0.406 -0.711 H161 A1ARG 50 A1ARG H162 H11 H 0 0 N N N N N N -5.792 -19.696 -18.481 -7.367 1.333 -0.333 H162 A1ARG 51 A1ARG H182 H12 H 0 0 N N N N N N -13.815 -21.600 -18.412 -2.062 5.086 -0.312 H182 A1ARG 52 A1ARG H183 H13 H 0 0 N N N N N N -13.506 -19.962 -17.744 -0.364 5.458 -0.698 H183 A1ARG 53 A1ARG H181 H14 H 0 0 N N N N N N -13.952 -20.158 -19.473 -1.270 4.295 -1.696 H181 A1ARG 54 A1ARG H192 H15 H 0 0 N N N N N N -11.648 -22.371 -17.628 0.338 2.475 -1.355 H192 A1ARG 55 A1ARG H191 H16 H 0 0 N N N N N N -10.132 -21.555 -18.141 1.375 3.609 -0.457 H191 A1ARG 56 A1ARG H193 H17 H 0 0 N N N N N N -11.226 -20.757 -16.962 0.902 2.061 0.282 H193 A1ARG 57 A1ARG H2 H18 H 0 1 N N N N N N -9.282 -14.081 -16.214 1.140 -0.712 0.554 H2 A1ARG 58 A1ARG H203 H19 H 0 0 N N N N N N -12.300 -22.587 -20.030 -0.007 3.283 2.263 H203 A1ARG 59 A1ARG H202 H20 H 0 0 N N N N N N -12.379 -21.124 -21.068 0.466 4.832 1.524 H202 A1ARG 60 A1ARG H201 H21 H 0 0 N N N N N N -10.788 -21.749 -20.517 -1.218 4.567 2.037 H201 A1ARG 61 A1ARG H212 H22 H 0 0 N N N N N N -6.406 -13.686 -19.236 1.056 -3.519 1.413 H212 A1ARG 62 A1ARG H211 H23 H 0 0 N N N N N N -6.815 -11.947 -19.423 0.213 -1.962 1.592 H211 A1ARG 63 A1ARG H222 H24 H 0 0 N N N N N N -5.133 -11.338 -17.738 -0.872 -3.723 2.960 H222 A1ARG 64 A1ARG H221 H25 H 0 0 N N N N N N -4.373 -12.325 -19.033 -1.963 -3.149 1.676 H221 A1ARG 65 A1ARG H232 H26 H 0 0 N N N N N N -3.659 -13.033 -16.760 -0.229 -5.658 1.548 H232 A1ARG 66 A1ARG H231 H27 H 0 0 N N N N N N -4.529 -14.331 -17.646 -1.987 -5.624 1.824 H231 A1ARG 67 A1ARG H242 H28 H 0 0 N N N N N N -5.673 -12.528 -15.459 -1.468 -6.086 -0.556 H242 A1ARG 68 A1ARG H241 H29 H 0 0 N N N N N N -5.270 -14.273 -15.318 -2.311 -4.529 -0.377 H241 A1ARG 69 A1ARG H252 H30 H 0 0 N N N N N N -7.707 -13.873 -15.705 -0.384 -4.325 -1.924 H252 A1ARG 70 A1ARG H251 H31 H 0 0 N N N N N N -6.942 -14.837 -17.013 0.707 -4.899 -0.640 H251 A1ARG 71 A1ARG H26 H32 H 0 1 N N N N N N -4.772 -21.902 -16.905 -7.879 0.359 2.201 H26 A1ARG 72 A1ARG H271 H33 H 0 0 N N N N N N -6.674 -19.937 -15.270 -8.998 -1.773 0.191 H271 A1ARG 73 A1ARG H272 H34 H 0 0 N N N N N N -5.385 -20.937 -14.518 -9.379 -1.676 1.993 H272 A1ARG 74 A1ARG H282 H35 H 0 0 N N N N N N -3.580 -19.720 -15.991 -10.341 0.649 1.664 H282 A1ARG 75 A1ARG H281 H36 H 0 0 N N N N N N -4.869 -18.720 -16.743 -9.959 0.552 -0.138 H281 A1ARG 76 A1ARG H4 H37 H 0 1 N N N N N N -13.401 -12.873 -17.306 4.582 1.176 -1.398 H4 A1ARG 77 A1ARG H5 H38 H 0 1 N N N N N N -12.640 -11.131 -14.911 4.120 -0.307 -3.372 H5 A1ARG 78 A1ARG H H39 H 0 1 N N N N N N -12.315 -10.743 -16.634 5.843 0.110 -3.205 H A1ARG 79 A1ARG H62 H40 H 0 1 N N N N N N -13.514 -13.426 -14.295 6.057 -1.273 -0.333 H62 A1ARG 80 A1ARG H61 H41 H 0 1 N N N N N N -14.933 -13.121 -15.353 6.853 0.207 -0.919 H61 A1ARG 81 A1ARG H7 H42 H 0 1 N N N N N N -12.913 -15.385 -15.781 4.783 0.162 1.332 H7 A1ARG 82 A1ARG H81 H43 H 0 1 N N N N N N -15.349 -14.417 -17.248 6.442 2.288 -0.063 H81 A1ARG 83 A1ARG H82 H44 H 0 1 N N N N N N -13.967 -15.404 -17.835 4.844 2.444 0.739 H82 A1ARG 84 A1ARG H92 H45 H 0 1 N N N N N N -14.951 -17.410 -17.153 7.210 3.214 1.966 H92 A1ARG 85 A1ARG H91 H46 H 0 1 N N N N N N -16.476 -16.464 -17.226 5.798 2.612 2.883 H91 A1ARG 86 A1ARG HN1 H47 H 0 1 N N N N N N -11.164 -13.238 -15.313 3.652 -1.318 -0.210 HN1 A1ARG 87 A1ARG HN2 H48 H 0 1 N N N N N N -16.274 -17.180 -14.837 8.014 1.175 3.165 HN2 A1ARG 88 A1ARG HN3 H49 H 0 1 N N N N N N -9.651 -19.096 -16.527 -3.378 0.160 1.082 HN3 A1ARG 89 A1ARG HO2 H50 H 0 1 N N N N N N -14.218 -9.717 -15.826 5.523 -2.233 -3.544 HO2 A1ARG 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARG O6 C15 DOUB N N 1 A1ARG O5 C15 SING N N 2 A1ARG C15 N3 SING N N 3 A1ARG C16 O5 SING N N 4 A1ARG C26 C16 SING N N 5 A1ARG C26 C28 SING N N 6 A1ARG C27 C26 SING N N 7 A1ARG C28 C27 SING N N 8 A1ARG N3 C SING N N 9 A1ARG C13 C SING N N 10 A1ARG C C1 SING N N 11 A1ARG O4 C13 SING N N 12 A1ARG C14 C13 SING N N 13 A1ARG C17 O4 SING N N 14 A1ARG C20 C17 SING N N 15 A1ARG C19 C17 SING N N 16 A1ARG C18 C17 SING N N 17 A1ARG O C1 DOUB N N 18 A1ARG C1 N SING N N 19 A1ARG N C2 SING N N 20 A1ARG C11 C2 SING N N 21 A1ARG C2 C3 SING N N 22 A1ARG C12 C11 SING N N 23 A1ARG C12 C25 SING N N 24 A1ARG C21 C12 SING N N 25 A1ARG C25 C24 SING N N 26 A1ARG C24 C23 SING N N 27 A1ARG C23 C22 SING N N 28 A1ARG C22 C21 SING N N 29 A1ARG O1 C3 DOUB N N 30 A1ARG C3 N1 SING N N 31 A1ARG N1 C4 SING N N 32 A1ARG C5 C4 SING N N 33 A1ARG C4 C6 SING N N 34 A1ARG O2 C5 SING N N 35 A1ARG C6 C7 SING N N 36 A1ARG C7 C10 SING N N 37 A1ARG C7 C8 SING N N 38 A1ARG C10 O3 DOUB N N 39 A1ARG N2 C10 SING N N 40 A1ARG C9 N2 SING N N 41 A1ARG C8 C9 SING N N 42 A1ARG N HN SING N N 43 A1ARG C H0 SING N N 44 A1ARG C11 H111 SING N N 45 A1ARG C11 H112 SING N N 46 A1ARG C12 H12 SING N N 47 A1ARG C13 H13 SING N N 48 A1ARG C14 H142 SING N N 49 A1ARG C14 H143 SING N N 50 A1ARG C14 H141 SING N N 51 A1ARG C16 H161 SING N N 52 A1ARG C16 H162 SING N N 53 A1ARG C18 H182 SING N N 54 A1ARG C18 H183 SING N N 55 A1ARG C18 H181 SING N N 56 A1ARG C19 H192 SING N N 57 A1ARG C19 H191 SING N N 58 A1ARG C19 H193 SING N N 59 A1ARG C2 H2 SING N N 60 A1ARG C20 H203 SING N N 61 A1ARG C20 H202 SING N N 62 A1ARG C20 H201 SING N N 63 A1ARG C21 H212 SING N N 64 A1ARG C21 H211 SING N N 65 A1ARG C22 H222 SING N N 66 A1ARG C22 H221 SING N N 67 A1ARG C23 H232 SING N N 68 A1ARG C23 H231 SING N N 69 A1ARG C24 H242 SING N N 70 A1ARG C24 H241 SING N N 71 A1ARG C25 H252 SING N N 72 A1ARG C25 H251 SING N N 73 A1ARG C26 H26 SING N N 74 A1ARG C27 H271 SING N N 75 A1ARG C27 H272 SING N N 76 A1ARG C28 H282 SING N N 77 A1ARG C28 H281 SING N N 78 A1ARG C4 H4 SING N N 79 A1ARG C5 H5 SING N N 80 A1ARG C5 H SING N N 81 A1ARG C6 H62 SING N N 82 A1ARG C6 H61 SING N N 83 A1ARG C7 H7 SING N N 84 A1ARG C8 H81 SING N N 85 A1ARG C8 H82 SING N N 86 A1ARG C9 H92 SING N N 87 A1ARG C9 H91 SING N N 88 A1ARG N1 HN1 SING N N 89 A1ARG N2 HN2 SING N N 90 A1ARG N3 HN3 SING N N 91 A1ARG O2 HO2 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARG SMILES ACDLabs 12.01 "CC(C)(C)OC(C)C(NC(=O)OCC1CC1)C(=O)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)CO" A1ARG InChI InChI 1.06 "InChI=1S/C29H50N4O7/c1-18(40-29(2,3)4)24(33-28(38)39-17-20-10-11-20)27(37)32-23(14-19-8-6-5-7-9-19)26(36)31-22(16-34)15-21-12-13-30-25(21)35/h18-24,34H,5-17H2,1-4H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t18-,21+,22-,23+,24?/m1/s1" A1ARG InChIKey InChI 1.06 HGHJOBJIAMXYGG-HATMDWNPSA-N A1ARG SMILES_CANONICAL CACTVS 3.385 "C[C@@H](OC(C)(C)C)[C@H](NC(=O)OCC1CC1)C(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O" A1ARG SMILES CACTVS 3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OCC1CC1)C(=O)N[CH](CC2CCCCC2)C(=O)N[CH](CO)C[CH]3CCNC3=O" A1ARG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OCC3CC3)OC(C)(C)C" A1ARG SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)CO)NC(=O)OCC3CC3)OC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARG "SYSTEMATIC NAME" ACDLabs 12.01 "O-tert-butyl-N-[(cyclopropylmethoxy)carbonyl]-L-threonyl-3-cyclohexyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" A1ARG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "cyclopropylmethyl ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARG "Create component" 2024-05-13 RCSB A1ARG "Modify PCM" 2024-09-27 PDBE A1ARG "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ARG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #