data_A1ARK # _chem_comp.id A1ARK _chem_comp.name "O-tert-butyl-N-[(2,2,2-trifluoroethoxy)carbonyl]-L-threonyl-3-cyclohexyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H45 F3 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-13 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 594.664 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BQN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARK N N1 N 0 1 N N N N N N -9.712 -15.498 -17.798 0.070 -0.315 1.093 N A1ARK 1 A1ARK C C1 C 0 1 N N S N N N -10.142 -17.827 -18.099 2.505 0.103 0.974 C A1ARK 2 A1ARK O O1 O 0 1 N N N N N N -11.044 -16.548 -16.306 1.202 -0.888 -0.727 O A1ARK 3 A1ARK C1 C2 C 0 1 N N N N N N -10.333 -16.569 -17.315 1.213 -0.403 0.385 C1 A1ARK 4 A1ARK C10 C3 C 0 1 N N N N N N -14.930 -15.883 -14.937 -6.034 1.785 -2.112 C10 A1ARK 5 A1ARK C11 C4 C 0 1 N N N N N N -9.123 -13.172 -18.027 -1.176 -2.409 0.882 C11 A1ARK 6 A1ARK C12 C5 C 0 1 N N N N N N -7.760 -12.784 -17.442 -2.444 -3.039 0.302 C12 A1ARK 7 A1ARK C13 C6 C 0 1 N N R N N N -11.550 -18.359 -18.373 2.375 1.596 1.283 C13 A1ARK 8 A1ARK C14 C7 C 0 1 N N N N N N -12.342 -17.361 -19.240 3.723 2.137 1.763 C14 A1ARK 9 A1ARK C15 C8 C 0 1 N N N N N N -8.193 -19.233 -17.753 4.863 -0.215 0.451 C15 A1ARK 10 A1ARK C16 C9 C 0 1 N N N N N N -5.810 -19.399 -16.949 7.206 -0.516 0.110 C16 A1ARK 11 A1ARK C17 C10 C 0 1 N N N N N N -12.045 -20.419 -19.832 1.079 3.380 0.343 C17 A1ARK 12 A1ARK C18 C11 C 0 1 N N N N N N -13.568 -20.310 -19.887 1.704 4.340 1.357 C18 A1ARK 13 A1ARK C19 C12 C 0 1 N N N N N N -11.778 -21.895 -19.588 -0.240 2.840 0.898 C19 A1ARK 14 A1ARK C2 C13 C 0 1 N N S N N N -9.967 -14.182 -17.238 -1.163 -0.911 0.571 C2 A1ARK 15 A1ARK C20 C14 C 0 1 N N N N N N -11.360 -19.944 -21.115 0.814 4.124 -0.968 C20 A1ARK 16 A1ARK C21 C15 C 0 1 N N N N N N -6.819 -12.548 -18.628 -2.537 -4.500 0.746 C21 A1ARK 17 A1ARK C22 C16 C 0 1 N N N N N N -5.360 -12.295 -18.227 -3.805 -5.130 0.166 C22 A1ARK 18 A1ARK C23 C17 C 0 1 N N N N N N -4.827 -13.417 -17.348 -3.754 -5.063 -1.362 C23 A1ARK 19 A1ARK C24 C18 C 0 1 N N N N N N -5.720 -13.551 -16.115 -3.661 -3.602 -1.806 C24 A1ARK 20 A1ARK C25 C19 C 0 1 N N N N N N -7.178 -13.843 -16.500 -2.394 -2.972 -1.226 C25 A1ARK 21 A1ARK C27 C20 C 0 1 N N N N N N -5.944 -20.352 -15.752 8.201 -0.728 -1.033 C27 A1ARK 22 A1ARK C3 C21 C 0 1 N N N N N N -11.430 -13.829 -17.351 -2.353 -0.252 1.219 C3 A1ARK 23 A1ARK C4 C22 C 0 1 N N S N N N -13.369 -12.729 -16.454 -4.704 0.388 1.210 C4 A1ARK 24 A1ARK C5 C23 C 0 1 N N N N N N -13.498 -11.339 -15.841 -5.366 -0.439 2.314 C5 A1ARK 25 A1ARK C6 C24 C 0 1 N N N N N N -14.336 -13.626 -15.688 -5.722 0.669 0.103 C6 A1ARK 26 A1ARK C7 C25 C 0 1 N N S N N N -14.163 -15.102 -15.974 -5.102 1.607 -0.934 C7 A1ARK 27 A1ARK C8 C26 C 0 1 N N N N N N -14.833 -15.469 -17.288 -4.949 3.032 -0.353 C8 A1ARK 28 A1ARK C9 C27 C 0 1 N N N N N N -15.818 -16.580 -16.938 -5.258 3.909 -1.587 C9 A1ARK 29 A1ARK F1 F1 F 0 1 N N N N N N -4.875 -20.270 -14.966 8.140 0.359 -1.911 F1 A1ARK 30 A1ARK F2 F2 F 0 1 N N N N N N -6.099 -21.583 -16.247 9.495 -0.835 -0.512 F2 A1ARK 31 A1ARK F3 F3 F 0 1 N N N N N N -6.972 -20.014 -14.980 7.877 -1.902 -1.722 F3 A1ARK 32 A1ARK N1 N2 N 0 1 N N N N N N -11.986 -13.162 -16.344 -3.572 -0.357 0.654 N1 A1ARK 33 A1ARK N2 N3 N 0 1 N N N N N N -15.939 -16.529 -15.492 -6.103 3.082 -2.456 N2 A1ARK 34 A1ARK N3 N4 N 0 1 N N N N N N -9.375 -18.798 -17.351 3.593 -0.104 0.015 N3 A1ARK 35 A1ARK O1 O2 O 0 1 N N N N N N -12.113 -14.152 -18.321 -2.214 0.373 2.249 O1 A1ARK 36 A1ARK O2 O3 O 0 1 N N N N N N -14.725 -10.719 -16.223 -5.933 -1.622 1.748 O2 A1ARK 37 A1ARK O3 O4 O 0 1 N N N N N N -14.617 -15.921 -13.752 -6.629 0.886 -2.669 O3 A1ARK 38 A1ARK O4 O5 O 0 1 N N N N N N -11.445 -19.764 -18.717 1.975 2.294 0.101 O4 A1ARK 39 A1ARK O5 O6 O 0 1 N N N N N N -7.023 -18.649 -17.115 5.863 -0.406 -0.430 O5 A1ARK 40 A1ARK O6 O7 O 0 1 N N N N N N -8.048 -20.080 -18.635 5.106 -0.144 1.639 O6 A1ARK 41 A1ARK HN H1 H 0 1 N N N N N N -9.064 -15.599 -18.553 0.064 0.139 1.950 HN A1ARK 42 A1ARK H0 H2 H 0 1 N N N N N N -9.647 -17.599 -19.054 2.722 -0.441 1.893 H0 A1ARK 43 A1ARK H111 H3 H 0 0 N N N N N N -8.945 -13.599 -19.025 -1.159 -2.556 1.962 H111 A1ARK 44 A1ARK H112 H4 H 0 0 N N N N N N -9.716 -12.250 -18.123 -0.300 -2.881 0.438 H112 A1ARK 45 A1ARK H12 H5 H 0 1 N N N N N N -7.871 -11.841 -16.887 -3.318 -2.494 0.660 H12 A1ARK 46 A1ARK H13 H6 H 0 1 N N N N N N -12.052 -18.333 -17.395 1.626 1.742 2.061 H13 A1ARK 47 A1ARK H142 H7 H 0 0 N N N N N N -13.351 -17.758 -19.428 3.608 3.176 2.071 H142 A1ARK 48 A1ARK H143 H8 H 0 0 N N N N N N -12.419 -16.398 -18.713 4.071 1.544 2.609 H143 A1ARK 49 A1ARK H141 H9 H 0 0 N N N N N N -11.822 -17.214 -20.198 4.449 2.075 0.953 H141 A1ARK 50 A1ARK H162 H10 H 0 0 N N N N N N -5.615 -19.983 -17.860 7.254 -1.364 0.794 H162 A1ARK 51 A1ARK H16 H11 H 0 1 N N N N N N -4.974 -18.706 -16.772 7.459 0.398 0.647 H16 A1ARK 52 A1ARK H183 H12 H 0 0 N N N N N N -13.942 -20.841 -20.775 2.659 4.701 0.975 H183 A1ARK 53 A1ARK H182 H13 H 0 0 N N N N N N -14.001 -20.760 -18.981 1.034 5.186 1.518 H182 A1ARK 54 A1ARK H181 H14 H 0 0 N N N N N N -13.858 -19.250 -19.945 1.863 3.819 2.301 H181 A1ARK 55 A1ARK H193 H15 H 0 0 N N N N N N -12.210 -22.487 -20.408 -0.052 2.310 1.832 H193 A1ARK 56 A1ARK H191 H16 H 0 0 N N N N N N -10.693 -22.069 -19.543 -0.924 3.669 1.082 H191 A1ARK 57 A1ARK H192 H17 H 0 0 N N N N N N -12.238 -22.198 -18.636 -0.685 2.156 0.175 H192 A1ARK 58 A1ARK H2 H18 H 0 1 N N N N N N -9.665 -14.154 -16.181 -1.209 -0.764 -0.508 H2 A1ARK 59 A1ARK H202 H19 H 0 0 N N N N N N -11.816 -20.444 -21.982 0.370 3.440 -1.690 H202 A1ARK 60 A1ARK H203 H20 H 0 0 N N N N N N -11.482 -18.855 -21.214 0.131 4.953 -0.783 H203 A1ARK 61 A1ARK H201 H21 H 0 0 N N N N N N -10.289 -20.191 -21.072 1.754 4.509 -1.363 H201 A1ARK 62 A1ARK H211 H22 H 0 0 N N N N N N -6.850 -13.436 -19.276 -1.664 -5.045 0.387 H211 A1ARK 63 A1ARK H212 H23 H 0 0 N N N N N N -7.181 -11.673 -19.187 -2.573 -4.548 1.834 H212 A1ARK 64 A1ARK H222 H24 H 0 0 N N N N N N -5.300 -11.346 -17.673 -3.871 -6.171 0.482 H222 A1ARK 65 A1ARK H221 H25 H 0 0 N N N N N N -4.745 -12.229 -19.136 -4.678 -4.585 0.524 H221 A1ARK 66 A1ARK H232 H26 H 0 0 N N N N N N -3.799 -13.183 -17.035 -2.881 -5.608 -1.721 H232 A1ARK 67 A1ARK H231 H27 H 0 0 N N N N N N -4.833 -14.361 -17.912 -4.657 -5.512 -1.776 H231 A1ARK 68 A1ARK H242 H28 H 0 0 N N N N N N -5.683 -12.611 -15.544 -3.625 -3.555 -2.895 H242 A1ARK 69 A1ARK H241 H29 H 0 0 N N N N N N -5.344 -14.375 -15.490 -4.535 -3.057 -1.447 H241 A1ARK 70 A1ARK H251 H30 H 0 0 N N N N N N -7.786 -13.872 -15.584 -2.327 -1.931 -1.542 H251 A1ARK 71 A1ARK H252 H31 H 0 0 N N N N N N -7.221 -14.822 -17.000 -1.520 -3.517 -1.584 H252 A1ARK 72 A1ARK H4 H32 H 0 1 N N N N N N -13.672 -12.689 -17.511 -4.349 1.331 1.626 H4 A1ARK 73 A1ARK H5 H33 H 0 1 N N N N N N -13.466 -11.426 -14.745 -4.619 -0.715 3.059 H5 A1ARK 74 A1ARK H H34 H 0 1 N N N N N N -12.659 -10.716 -16.184 -6.151 0.150 2.788 H A1ARK 75 A1ARK H62 H35 H 0 1 N N N N N N -14.181 -13.462 -14.611 -6.006 -0.267 -0.377 H62 A1ARK 76 A1ARK H61 H36 H 0 1 N N N N N N -15.363 -13.339 -15.959 -6.607 1.139 0.534 H61 A1ARK 77 A1ARK H7 H37 H 0 1 N N N N N N -13.100 -15.384 -15.980 -4.137 1.222 -1.266 H7 A1ARK 78 A1ARK H81 H38 H 0 1 N N N N N N -15.363 -14.601 -17.706 -5.673 3.208 0.442 H81 A1ARK 79 A1ARK H82 H39 H 0 1 N N N N N N -14.088 -15.828 -18.014 -3.932 3.201 0.001 H82 A1ARK 80 A1ARK H91 H40 H 0 1 N N N N N N -16.792 -16.398 -17.415 -5.792 4.810 -1.284 H91 A1ARK 81 A1ARK H92 H41 H 0 1 N N N N N N -15.429 -17.557 -17.260 -4.335 4.173 -2.103 H92 A1ARK 82 A1ARK HN1 H42 H 0 1 N N N N N N -11.458 -12.960 -15.519 -3.700 -0.926 -0.121 HN1 A1ARK 83 A1ARK HN2 H43 H 0 1 N N N N N N -16.695 -16.934 -14.978 -6.646 3.428 -3.181 HN2 A1ARK 84 A1ARK HN3 H44 H 0 1 N N N N N N -9.753 -19.154 -16.497 3.399 -0.161 -0.934 HN3 A1ARK 85 A1ARK HO2 H45 H 0 1 N N N N N N -14.781 -9.856 -15.829 -6.371 -2.196 2.391 HO2 A1ARK 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARK O6 C15 DOUB N N 1 A1ARK O5 C15 SING N N 2 A1ARK C15 N3 SING N N 3 A1ARK C16 O5 SING N N 4 A1ARK C27 C16 SING N N 5 A1ARK F1 C27 SING N N 6 A1ARK F2 C27 SING N N 7 A1ARK F3 C27 SING N N 8 A1ARK N3 C SING N N 9 A1ARK C13 C SING N N 10 A1ARK C C1 SING N N 11 A1ARK O4 C13 SING N N 12 A1ARK C14 C13 SING N N 13 A1ARK C17 O4 SING N N 14 A1ARK C20 C17 SING N N 15 A1ARK C19 C17 SING N N 16 A1ARK C18 C17 SING N N 17 A1ARK O C1 DOUB N N 18 A1ARK C1 N SING N N 19 A1ARK N C2 SING N N 20 A1ARK C11 C2 SING N N 21 A1ARK C2 C3 SING N N 22 A1ARK C12 C11 SING N N 23 A1ARK C25 C12 SING N N 24 A1ARK C12 C21 SING N N 25 A1ARK C24 C25 SING N N 26 A1ARK C23 C24 SING N N 27 A1ARK C22 C23 SING N N 28 A1ARK C21 C22 SING N N 29 A1ARK O1 C3 DOUB N N 30 A1ARK C3 N1 SING N N 31 A1ARK N1 C4 SING N N 32 A1ARK C5 C4 SING N N 33 A1ARK C4 C6 SING N N 34 A1ARK O2 C5 SING N N 35 A1ARK C6 C7 SING N N 36 A1ARK C7 C10 SING N N 37 A1ARK C7 C8 SING N N 38 A1ARK C10 O3 DOUB N N 39 A1ARK N2 C10 SING N N 40 A1ARK C8 C9 SING N N 41 A1ARK C9 N2 SING N N 42 A1ARK N HN SING N N 43 A1ARK C H0 SING N N 44 A1ARK C11 H111 SING N N 45 A1ARK C11 H112 SING N N 46 A1ARK C12 H12 SING N N 47 A1ARK C13 H13 SING N N 48 A1ARK C14 H142 SING N N 49 A1ARK C14 H143 SING N N 50 A1ARK C14 H141 SING N N 51 A1ARK C16 H162 SING N N 52 A1ARK C16 H16 SING N N 53 A1ARK C18 H183 SING N N 54 A1ARK C18 H182 SING N N 55 A1ARK C18 H181 SING N N 56 A1ARK C19 H193 SING N N 57 A1ARK C19 H191 SING N N 58 A1ARK C19 H192 SING N N 59 A1ARK C2 H2 SING N N 60 A1ARK C20 H202 SING N N 61 A1ARK C20 H203 SING N N 62 A1ARK C20 H201 SING N N 63 A1ARK C21 H211 SING N N 64 A1ARK C21 H212 SING N N 65 A1ARK C22 H222 SING N N 66 A1ARK C22 H221 SING N N 67 A1ARK C23 H232 SING N N 68 A1ARK C23 H231 SING N N 69 A1ARK C24 H242 SING N N 70 A1ARK C24 H241 SING N N 71 A1ARK C25 H251 SING N N 72 A1ARK C25 H252 SING N N 73 A1ARK C4 H4 SING N N 74 A1ARK C5 H5 SING N N 75 A1ARK C5 H SING N N 76 A1ARK C6 H62 SING N N 77 A1ARK C6 H61 SING N N 78 A1ARK C7 H7 SING N N 79 A1ARK C8 H81 SING N N 80 A1ARK C8 H82 SING N N 81 A1ARK C9 H91 SING N N 82 A1ARK C9 H92 SING N N 83 A1ARK N1 HN1 SING N N 84 A1ARK N2 HN2 SING N N 85 A1ARK N3 HN3 SING N N 86 A1ARK O2 HO2 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARK SMILES ACDLabs 12.01 "CC(C)(C)OC(C)C(NC(=O)OCC(F)(F)F)C(=O)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)CO" A1ARK InChI InChI 1.06 "InChI=1S/C27H45F3N4O7/c1-16(41-26(2,3)4)21(34-25(39)40-15-27(28,29)30)24(38)33-20(12-17-8-6-5-7-9-17)23(37)32-19(14-35)13-18-10-11-31-22(18)36/h16-21,35H,5-15H2,1-4H3,(H,31,36)(H,32,37)(H,33,38)(H,34,39)/t16-,18+,19-,20+,21+/m1/s1" A1ARK InChIKey InChI 1.06 QMUHWSZOWZSKBM-VLQCVTHLSA-N A1ARK SMILES_CANONICAL CACTVS 3.385 "C[C@@H](OC(C)(C)C)[C@H](NC(=O)OCC(F)(F)F)C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" A1ARK SMILES CACTVS 3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OCC(F)(F)F)C(=O)N[CH](CC1CCCCC1)C(=O)N[CH](CO)C[CH]2CCNC2=O" A1ARK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OCC(F)(F)F)OC(C)(C)C" A1ARK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)CO)NC(=O)OCC(F)(F)F)OC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARK "SYSTEMATIC NAME" ACDLabs 12.01 "O-tert-butyl-N-[(2,2,2-trifluoroethoxy)carbonyl]-L-threonyl-3-cyclohexyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" A1ARK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,2,2-tris(fluoranyl)ethyl ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARK "Create component" 2024-05-13 RCSB A1ARK "Modify PCM" 2024-09-27 PDBE A1ARK "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ARK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #