data_A1ARN # _chem_comp.id A1ARN _chem_comp.name "propan-2-yl {(2R)-1-[(1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexan-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-13 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BQP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARN C11 C1 C 0 1 N N S N N N -9.700 -17.188 -18.529 -2.649 -0.181 0.521 C11 A1ARN 1 A1ARN C12 C2 C 0 1 N N N N N N -9.936 -15.991 -17.637 -1.288 -0.078 -0.119 C12 A1ARN 2 A1ARN C13 C3 C 0 1 N N N N N N -8.494 -14.651 -19.186 -0.741 2.077 1.113 C13 A1ARN 3 A1ARN C14 C4 C 0 1 N N S N N N -9.505 -13.628 -17.228 0.818 1.305 -0.465 C14 A1ARN 4 A1ARN C15 C5 C 0 1 N N N N N N -10.875 -13.043 -17.458 1.948 0.900 0.447 C15 A1ARN 5 A1ARN C16 C6 C 0 1 N N S N N N -7.898 -13.254 -19.027 -0.238 3.347 0.394 C16 A1ARN 6 A1ARN C17 C7 C 0 1 N N S N N N -13.008 -12.268 -16.617 4.304 0.431 0.855 C17 A1ARN 7 A1ARN C18 C8 C 0 1 N N N N N N -6.970 -13.092 -17.817 -0.558 3.507 -1.094 C18 A1ARN 8 A1ARN C19 C9 C 0 1 N N N N N N -14.054 -13.041 -15.787 5.428 -0.195 0.028 C19 A1ARN 9 A1ARN C2 C10 C 0 1 N N N N N N -6.195 -20.166 -17.032 -7.149 -1.036 -0.981 C2 A1ARN 10 A1ARN C20 C11 C 0 1 N N S N N N -14.153 -14.529 -16.157 4.936 -1.505 -0.591 C20 A1ARN 11 A1ARN C21 C12 C 0 1 N N N N N N -14.871 -14.758 -17.481 4.614 -2.539 0.513 C21 A1ARN 12 A1ARN C22 C13 C 0 1 N N N N N N -15.683 -16.046 -17.272 5.073 -3.858 -0.146 C22 A1ARN 13 A1ARN C23 C14 C 0 1 N N N N N N -5.989 -11.916 -17.811 -0.468 4.915 -1.687 C23 A1ARN 14 A1ARN C24 C15 C 0 1 N N N N N N -14.955 -15.367 -15.189 6.036 -2.154 -1.401 C24 A1ARN 15 A1ARN C25 C16 C 0 1 N N N N N N -6.602 -14.231 -16.863 -1.653 2.613 -1.680 C25 A1ARN 16 A1ARN C26 C17 C 0 1 N N N N N N -11.431 -16.497 -20.219 -2.048 -2.379 1.545 C26 A1ARN 17 A1ARN C3 C18 C 0 1 N N N N N N -6.290 -21.541 -17.667 -7.845 -1.188 -2.335 C3 A1ARN 18 A1ARN C30 C19 C 0 1 N N N N N N -10.932 -17.630 -19.329 -2.539 -0.959 1.833 C30 A1ARN 19 A1ARN C31 C20 C 0 1 N N N N N N -12.080 -18.053 -18.417 -1.546 -0.255 2.761 C31 A1ARN 20 A1ARN C32 C21 C 0 1 N N N N N N -10.570 -18.828 -20.198 -3.911 -1.021 2.507 C32 A1ARN 21 A1ARN C34 C22 C 0 1 N N R N N N -8.441 -12.641 -17.738 0.789 2.838 -0.639 C34 A1ARN 22 A1ARN C4 C23 C 0 1 N N N N N N -5.459 -20.254 -15.698 -7.757 -2.023 0.018 C4 A1ARN 23 A1ARN C8 C24 C 0 1 N N N N N N -12.961 -10.771 -16.280 4.836 1.666 1.586 C8 A1ARN 24 A1ARN C9 C25 C 0 1 N N N N N N -7.936 -18.691 -17.775 -4.891 -0.669 -0.299 C9 A1ARN 25 A1ARN N10 N1 N 0 1 N N N N N N -9.209 -18.291 -17.731 -3.563 -0.880 -0.386 N10 A1ARN 26 A1ARN N13 N2 N 0 1 N N N N N N -9.355 -14.848 -18.018 -0.496 0.979 0.149 N13 A1ARN 27 A1ARN N16 N3 N 0 1 N N N N N N -11.639 -12.759 -16.408 3.206 0.824 -0.031 N16 A1ARN 28 A1ARN N23 N4 N 0 1 N N N N N N -15.790 -16.170 -15.832 6.095 -3.471 -1.126 N23 A1ARN 29 A1ARN O1 O1 O 0 1 N N N N N N -7.517 -19.661 -16.789 -5.731 -1.312 -1.132 O1 A1ARN 30 A1ARN O26 O2 O 0 1 N N N N N N -14.836 -15.318 -13.968 6.761 -1.575 -2.182 O26 A1ARN 31 A1ARN O29 O3 O 0 1 N N N N N N -7.112 -18.290 -18.584 -5.331 0.101 0.532 O29 A1ARN 32 A1ARN O33 O4 O 0 1 N N N N N N -10.591 -16.077 -16.598 -0.906 -0.946 -0.874 O33 A1ARN 33 A1ARN O38 O5 O 0 1 N N N N N N -11.272 -12.843 -18.598 1.725 0.644 1.611 O38 A1ARN 34 A1ARN O9 O6 O 0 1 N N N N N N -14.270 -10.185 -16.243 5.417 2.566 0.640 O9 A1ARN 35 A1ARN H11 H1 H 0 1 N N N N N N -8.921 -16.912 -19.255 -3.033 0.819 0.722 H11 A1ARN 36 A1ARN H131 H2 H 0 0 N N N N N N -9.084 -14.714 -20.112 -0.176 1.911 2.030 H131 A1ARN 37 A1ARN H13 H3 H 0 1 N N N N N N -7.697 -15.408 -19.207 -1.806 2.159 1.333 H13 A1ARN 38 A1ARN H14 H4 H 0 1 N N N N N N -9.349 -13.828 -16.158 0.916 0.814 -1.433 H14 A1ARN 39 A1ARN H16 H5 H 0 1 N N N N N N -7.751 -12.619 -19.913 -0.052 4.232 1.002 H16 A1ARN 40 A1ARN H17 H6 H 0 1 N N N N N N -13.269 -12.373 -17.680 3.941 -0.294 1.584 H17 A1ARN 41 A1ARN H19 H7 H 0 1 N N N N N N -15.038 -12.576 -15.947 5.723 0.493 -0.765 H19 A1ARN 42 A1ARN H191 H8 H 0 0 N N N N N N -13.781 -12.964 -14.724 6.284 -0.397 0.672 H191 A1ARN 43 A1ARN H2 H9 H 0 1 N N N N N N -5.644 -19.492 -17.705 -7.284 -0.019 -0.615 H2 A1ARN 44 A1ARN H20 H10 H 0 1 N N N N N N -13.136 -14.942 -16.229 4.059 -1.326 -1.213 H20 A1ARN 45 A1ARN H21 H11 H 0 1 N N N N N N -14.145 -14.886 -18.298 5.188 -2.334 1.418 H21 A1ARN 46 A1ARN H211 H12 H 0 0 N N N N N N -15.537 -13.913 -17.711 3.546 -2.560 0.728 H211 A1ARN 47 A1ARN H221 H13 H 0 0 N N N N N N -15.157 -16.912 -17.700 5.501 -4.525 0.602 H221 A1ARN 48 A1ARN H22 H14 H 0 1 N N N N N N -16.679 -15.958 -17.731 4.234 -4.342 -0.646 H22 A1ARN 49 A1ARN H232 H15 H 0 0 N N N N N N -4.959 -12.297 -17.869 -0.028 5.590 -0.953 H232 A1ARN 50 A1ARN H231 H16 H 0 0 N N N N N N -6.189 -11.267 -18.677 0.156 4.893 -2.581 H231 A1ARN 51 A1ARN H23 H17 H 0 1 N N N N N N -6.115 -11.339 -16.883 -1.467 5.263 -1.949 H23 A1ARN 52 A1ARN H252 H18 H 0 0 N N N N N N -5.539 -14.486 -16.988 -2.517 3.223 -1.943 H252 A1ARN 53 A1ARN H25 H19 H 0 1 N N N N N N -6.784 -13.913 -15.826 -1.275 2.114 -2.573 H25 A1ARN 54 A1ARN H251 H20 H 0 0 N N N N N N -7.219 -15.113 -17.090 -1.946 1.867 -0.942 H251 A1ARN 55 A1ARN H261 H21 H 0 0 N N N N N N -12.313 -16.834 -20.783 -1.070 -2.335 1.065 H261 A1ARN 56 A1ARN H262 H22 H 0 0 N N N N N N -11.703 -15.633 -19.595 -1.969 -2.933 2.480 H262 A1ARN 57 A1ARN H26 H23 H 0 1 N N N N N N -10.636 -16.206 -20.922 -2.754 -2.880 0.884 H26 A1ARN 58 A1ARN H33 H24 H 0 1 N N N N N N -5.278 -21.930 -17.854 -7.709 -2.206 -2.701 H33 A1ARN 59 A1ARN H34 H25 H 0 1 N N N N N N -6.825 -22.222 -16.988 -8.909 -0.981 -2.222 H34 A1ARN 60 A1ARN H3 H26 H 0 1 N N N N N N -6.836 -21.468 -18.619 -7.412 -0.486 -3.047 H3 A1ARN 61 A1ARN H312 H27 H 0 0 N N N N N N -12.941 -18.361 -19.029 -0.572 -0.199 2.276 H312 A1ARN 62 A1ARN H311 H28 H 0 0 N N N N N N -11.757 -18.895 -17.788 -1.903 0.752 2.978 H311 A1ARN 63 A1ARN H31 H29 H 0 1 N N N N N N -12.370 -17.207 -17.776 -1.457 -0.817 3.691 H31 A1ARN 64 A1ARN H321 H30 H 0 0 N N N N N N -11.453 -19.145 -20.772 -3.832 -1.575 3.442 H321 A1ARN 65 A1ARN H32 H31 H 0 1 N N N N N N -9.764 -18.547 -20.891 -4.261 -0.009 2.713 H32 A1ARN 66 A1ARN H322 H32 H 0 0 N N N N N N -10.232 -19.656 -19.558 -4.618 -1.522 1.846 H322 A1ARN 67 A1ARN H341 H33 H 0 0 N N N N N N -8.663 -11.564 -17.712 1.735 3.342 -0.839 H341 A1ARN 68 A1ARN H4 H34 H 0 1 N N N N N N -4.442 -20.640 -15.864 -7.261 -1.914 0.983 H4 A1ARN 69 A1ARN H42 H35 H 0 1 N N N N N N -5.402 -19.254 -15.244 -8.821 -1.816 0.131 H42 A1ARN 70 A1ARN H41 H36 H 0 1 N N N N N N -6.002 -20.932 -15.024 -7.621 -3.040 -0.348 H41 A1ARN 71 A1ARN H81 H37 H 0 1 N N N N N N -12.487 -10.644 -15.295 4.016 2.163 2.104 H81 A1ARN 72 A1ARN H8 H38 H 0 1 N N N N N N -12.362 -10.254 -17.044 5.592 1.362 2.310 H8 A1ARN 73 A1ARN HN10 H39 H 0 0 N N N N N N -9.845 -18.770 -17.126 -3.212 -1.495 -1.049 HN10 A1ARN 74 A1ARN HN16 H40 H 0 0 N N N N N N -11.284 -12.879 -15.481 3.384 1.030 -0.962 HN16 A1ARN 75 A1ARN HN23 H41 H 0 0 N N N N N N -16.424 -16.793 -15.374 6.730 -4.086 -1.526 HN23 A1ARN 76 A1ARN HO9 H42 H 0 1 N N N N N N -14.198 -9.262 -16.032 5.776 3.373 1.034 HO9 A1ARN 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARN O26 C24 DOUB N N 1 A1ARN C24 N23 SING N N 2 A1ARN C24 C20 SING N N 3 A1ARN N23 C22 SING N N 4 A1ARN C22 C21 SING N N 5 A1ARN C21 C20 SING N N 6 A1ARN C20 C19 SING N N 7 A1ARN C19 C17 SING N N 8 A1ARN C8 C17 SING N N 9 A1ARN C17 N16 SING N N 10 A1ARN O9 C8 SING N N 11 A1ARN N16 C15 SING N N 12 A1ARN O38 C15 DOUB N N 13 A1ARN C15 C14 SING N N 14 A1ARN C14 C34 SING N N 15 A1ARN C14 N13 SING N N 16 A1ARN C34 C18 SING N N 17 A1ARN C34 C16 SING N N 18 A1ARN C23 C18 SING N N 19 A1ARN C25 C18 SING N N 20 A1ARN C18 C16 SING N N 21 A1ARN C16 C13 SING N N 22 A1ARN C13 N13 SING N N 23 A1ARN N13 C12 SING N N 24 A1ARN O33 C12 DOUB N N 25 A1ARN C12 C11 SING N N 26 A1ARN C30 C11 SING N N 27 A1ARN C11 N10 SING N N 28 A1ARN C26 C30 SING N N 29 A1ARN C32 C30 SING N N 30 A1ARN C31 C30 SING N N 31 A1ARN N10 C9 SING N N 32 A1ARN C9 O29 DOUB N N 33 A1ARN O1 C9 SING N N 34 A1ARN C2 O1 SING N N 35 A1ARN C3 C2 SING N N 36 A1ARN C4 C2 SING N N 37 A1ARN C11 H11 SING N N 38 A1ARN C13 H131 SING N N 39 A1ARN C13 H13 SING N N 40 A1ARN C14 H14 SING N N 41 A1ARN C16 H16 SING N N 42 A1ARN C17 H17 SING N N 43 A1ARN C19 H19 SING N N 44 A1ARN C19 H191 SING N N 45 A1ARN C2 H2 SING N N 46 A1ARN C20 H20 SING N N 47 A1ARN C21 H21 SING N N 48 A1ARN C21 H211 SING N N 49 A1ARN C22 H221 SING N N 50 A1ARN C22 H22 SING N N 51 A1ARN C23 H232 SING N N 52 A1ARN C23 H231 SING N N 53 A1ARN C23 H23 SING N N 54 A1ARN C25 H252 SING N N 55 A1ARN C25 H25 SING N N 56 A1ARN C25 H251 SING N N 57 A1ARN C26 H261 SING N N 58 A1ARN C26 H262 SING N N 59 A1ARN C26 H26 SING N N 60 A1ARN C3 H33 SING N N 61 A1ARN C3 H34 SING N N 62 A1ARN C3 H3 SING N N 63 A1ARN C31 H312 SING N N 64 A1ARN C31 H311 SING N N 65 A1ARN C31 H31 SING N N 66 A1ARN C32 H321 SING N N 67 A1ARN C32 H32 SING N N 68 A1ARN C32 H322 SING N N 69 A1ARN C34 H341 SING N N 70 A1ARN C4 H4 SING N N 71 A1ARN C4 H42 SING N N 72 A1ARN C4 H41 SING N N 73 A1ARN C8 H81 SING N N 74 A1ARN C8 H8 SING N N 75 A1ARN N10 HN10 SING N N 76 A1ARN N16 HN16 SING N N 77 A1ARN N23 HN23 SING N N 78 A1ARN O9 HO9 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARN SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C(NC(=O)OC(C)C)C(C)(C)C" A1ARN InChI InChI 1.06 "InChI=1S/C25H42N4O6/c1-13(2)35-23(34)28-19(24(3,4)5)22(33)29-11-16-17(25(16,6)7)18(29)21(32)27-15(12-30)10-14-8-9-26-20(14)31/h13-19,30H,8-12H2,1-7H3,(H,26,31)(H,27,32)(H,28,34)/t14-,15+,16-,17-,18-,19+/m0/s1" A1ARN InChIKey InChI 1.06 BIZDOWIOVOPHRD-CABLIKTCSA-N A1ARN SMILES_CANONICAL CACTVS 3.385 "CC(C)OC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C2(C)C)C(C)(C)C" A1ARN SMILES CACTVS 3.385 "CC(C)OC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](CO)C[CH]3CCNC3=O)C2(C)C)C(C)(C)C" A1ARN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO)C2(C)C)C(C)(C)C" A1ARN SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)NC(C(=O)N1CC2C(C1C(=O)NC(CC3CCNC3=O)CO)C2(C)C)C(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARN "SYSTEMATIC NAME" ACDLabs 12.01 "propan-2-yl {(2R)-1-[(1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexan-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate" A1ARN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "propan-2-yl ~{N}-[(2~{S})-1-[(1~{R},2~{S},5~{S})-6,6-dimethyl-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3-azabicyclo[3.1.0]hexan-3-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARN "Create component" 2024-05-13 RCSB A1ARN "Modify PCM" 2024-09-27 PDBE A1ARN "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ARN _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #