data_A1ARU # _chem_comp.id A1ARU _chem_comp.name "O-tert-butyl-N-(trifluoroacetyl)-L-threonyl-3-cyclohexyl-N-{(2R)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H42 F3 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-14 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.637 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BR0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARU N N1 N 0 1 N N N N N N -9.468 -15.742 -17.624 -0.602 0.215 1.205 N A1ARU 1 A1ARU C C1 C 0 1 N N S N N N -9.849 -18.047 -17.979 -2.944 -0.536 0.939 C A1ARU 2 A1ARU O O1 O 0 1 N N N N N N -10.857 -16.790 -16.204 -1.626 0.459 -0.748 O A1ARU 3 A1ARU C1 C2 C 0 1 N N N N N N -10.120 -16.801 -17.182 -1.678 0.082 0.404 C1 A1ARU 4 A1ARU C10 C3 C 0 1 N N N N N N -14.932 -16.036 -14.951 3.420 -1.735 -1.019 C10 A1ARU 5 A1ARU C11 C4 C 0 1 N N N N N N -9.157 -13.486 -18.381 0.663 2.252 0.721 C11 A1ARU 6 A1ARU C12 C5 C 0 1 N N N N N N -7.807 -12.912 -17.959 1.908 2.788 0.013 C12 A1ARU 7 A1ARU C13 C6 C 0 1 N N R N N N -11.143 -18.653 -18.518 -2.805 -2.060 0.943 C13 A1ARU 8 A1ARU C14 C7 C 0 1 N N N N N N -11.712 -17.751 -19.613 -4.095 -2.688 1.475 C14 A1ARU 9 A1ARU C15 C8 C 0 1 N N N N N N -7.776 -19.172 -17.439 -4.687 1.033 0.280 C15 A1ARU 10 A1ARU C16 C9 C 0 1 N N N N N N -6.962 -19.963 -16.421 -5.917 1.382 -0.518 C16 A1ARU 11 A1ARU C17 C10 C 0 1 N N N N N N -11.955 -20.929 -18.924 -1.618 -3.587 -0.472 C17 A1ARU 12 A1ARU C18 C11 C 0 1 N N N N N N -12.994 -20.548 -17.873 -2.059 -4.734 0.438 C18 A1ARU 13 A1ARU C19 C12 C 0 1 N N N N N N -11.388 -22.295 -18.538 -0.243 -3.084 -0.028 C19 A1ARU 14 A1ARU C2 C13 C 0 1 N N S N N N -9.833 -14.373 -17.338 0.659 0.723 0.660 C2 A1ARU 15 A1ARU C20 C14 C 0 1 N N N N N N -12.633 -21.036 -20.288 -1.537 -4.084 -1.917 C20 A1ARU 16 A1ARU C21 C15 C 0 1 N N N N N N -6.931 -12.821 -19.203 1.987 4.305 0.198 C21 A1ARU 17 A1ARU C22 C16 C 0 1 N N N N N N -5.478 -12.447 -18.930 3.233 4.841 -0.511 C22 A1ARU 18 A1ARU C23 C17 C 0 1 N N N N N N -4.880 -13.394 -17.901 3.151 4.513 -2.003 C23 A1ARU 19 A1ARU C24 C18 C 0 1 N N N N N N -5.706 -13.316 -16.629 3.072 2.996 -2.188 C24 A1ARU 20 A1ARU C25 C19 C 0 1 N N N N N N -7.134 -13.780 -16.902 1.827 2.460 -1.480 C25 A1ARU 21 A1ARU C3 C20 C 0 1 N N N N N N -11.309 -14.117 -17.406 1.810 0.185 1.470 C3 A1ARU 22 A1ARU C4 C21 C 0 1 N N S N N N -13.200 -12.917 -16.395 4.122 -0.561 1.662 C4 A1ARU 23 A1ARU C5 C22 C 0 1 N N N N N N -13.143 -11.447 -16.018 4.785 0.472 2.536 C5 A1ARU 24 A1ARU C6 C23 C 0 1 N N N N N N -14.108 -13.697 -15.438 5.149 -1.137 0.685 C6 A1ARU 25 A1ARU C7 C24 C 0 1 N N S N N N -14.151 -15.153 -15.878 4.509 -2.273 -0.117 C7 A1ARU 26 A1ARU C8 C25 C 0 1 N N N N N N -14.885 -15.292 -17.209 5.536 -2.893 -1.091 C8 A1ARU 27 A1ARU C9 C26 C 0 1 N N N N N N -15.898 -16.423 -17.025 5.261 -2.100 -2.387 C9 A1ARU 28 A1ARU F17 F1 F 0 1 N N N N N N -5.663 -19.778 -16.622 -5.604 1.380 -1.881 F17 A1ARU 29 A1ARU F18 F2 F 0 1 N N N N N N -7.221 -21.257 -16.512 -6.918 0.437 -0.267 F18 A1ARU 30 A1ARU F19 F3 F 0 1 N N N N N N -7.266 -19.564 -15.198 -6.370 2.652 -0.145 F19 A1ARU 31 A1ARU N1 N2 N 0 1 N N N N N N -11.863 -13.494 -16.367 3.030 0.063 0.910 N1 A1ARU 32 A1ARU N2 N3 N 0 1 N N N N N N -15.861 -16.729 -15.609 3.866 -1.654 -2.284 N2 A1ARU 33 A1ARU N3 N4 N 0 1 N N N N N N -9.082 -19.021 -17.215 -4.072 -0.151 0.089 N3 A1ARU 34 A1ARU N4 N5 N 0 1 N N N N N N -14.165 -10.718 -16.076 4.363 1.680 2.531 N4 A1ARU 35 A1ARU O1 O2 O 0 1 N N N N N N -11.943 -14.459 -18.388 1.638 -0.139 2.626 O1 A1ARU 36 A1ARU O3 O3 O 0 1 N N N N N N -14.705 -16.097 -13.757 2.305 -1.427 -0.655 O3 A1ARU 37 A1ARU O4 O4 O 0 1 N N N N N N -10.870 -19.977 -18.998 -2.565 -2.520 -0.388 O4 A1ARU 38 A1ARU O6 O5 O 0 1 N N N N N N -7.247 -18.683 -18.431 -4.250 1.819 1.094 O6 A1ARU 39 A1ARU HN H1 H 0 1 N N N N N N -8.664 -15.898 -18.198 -0.664 -0.021 2.144 HN A1ARU 40 A1ARU H0 H2 H 0 1 N N N N N N -9.246 -17.752 -18.850 -3.118 -0.184 1.956 H0 A1ARU 41 A1ARU H111 H3 H 0 0 N N N N N N -9.004 -14.084 -19.291 0.671 2.573 1.763 H111 A1ARU 42 A1ARU H112 H4 H 0 0 N N N N N N -9.831 -12.646 -18.603 -0.230 2.637 0.229 H112 A1ARU 43 A1ARU H12 H5 H 0 1 N N N N N N -7.958 -11.902 -17.551 2.797 2.323 0.439 H12 A1ARU 44 A1ARU H13 H6 H 0 1 N N N N N N -11.872 -18.702 -17.696 -1.971 -2.347 1.583 H13 A1ARU 45 A1ARU H142 H7 H 0 0 N N N N N N -12.644 -18.188 -20.001 -3.966 -3.767 1.561 H142 A1ARU 46 A1ARU H141 H8 H 0 0 N N N N N N -11.920 -16.755 -19.196 -4.326 -2.270 2.455 H141 A1ARU 47 A1ARU H143 H9 H 0 0 N N N N N N -10.981 -17.661 -20.430 -4.914 -2.474 0.787 H143 A1ARU 48 A1ARU H181 H10 H 0 0 N N N N N N -13.795 -21.302 -17.858 -3.055 -5.068 0.145 H181 A1ARU 49 A1ARU H183 H11 H 0 0 N N N N N N -12.515 -20.502 -16.884 -1.357 -5.562 0.346 H183 A1ARU 50 A1ARU H182 H12 H 0 0 N N N N N N -13.421 -19.565 -18.120 -2.082 -4.390 1.472 H182 A1ARU 51 A1ARU H191 H13 H 0 0 N N N N N N -12.206 -23.028 -18.479 -0.300 -2.730 1.001 H191 A1ARU 52 A1ARU H192 H14 H 0 0 N N N N N N -10.661 -22.618 -19.297 0.480 -3.898 -0.092 H192 A1ARU 53 A1ARU H193 H15 H 0 0 N N N N N N -10.889 -22.222 -17.560 0.072 -2.266 -0.677 H193 A1ARU 54 A1ARU H2 H16 H 0 1 N N N N N N -9.465 -14.089 -16.341 0.763 0.401 -0.377 H2 A1ARU 55 A1ARU H201 H17 H 0 0 N N N N N N -13.459 -21.761 -20.232 -1.222 -3.267 -2.565 H201 A1ARU 56 A1ARU H203 H18 H 0 0 N N N N N N -13.028 -20.052 -20.579 -0.814 -4.898 -1.981 H203 A1ARU 57 A1ARU H202 H19 H 0 0 N N N N N N -11.900 -21.373 -21.036 -2.516 -4.442 -2.233 H202 A1ARU 58 A1ARU H212 H20 H 0 0 N N N N N N -6.945 -13.800 -19.705 1.098 4.769 -0.228 H212 A1ARU 59 A1ARU H211 H21 H 0 0 N N N N N N -7.361 -12.060 -19.871 2.045 4.538 1.261 H211 A1ARU 60 A1ARU H221 H22 H 0 0 N N N N N N -4.903 -12.515 -19.865 3.289 5.921 -0.379 H221 A1ARU 61 A1ARU H222 H23 H 0 0 N N N N N N -5.433 -11.417 -18.546 4.122 4.376 -0.085 H222 A1ARU 62 A1ARU H231 H24 H 0 0 N N N N N N -4.897 -14.423 -18.291 2.262 4.978 -2.429 H231 A1ARU 63 A1ARU H232 H25 H 0 0 N N N N N N -3.842 -13.100 -17.687 4.038 4.895 -2.508 H232 A1ARU 64 A1ARU H241 H26 H 0 0 N N N N N N -5.254 -13.962 -15.862 3.014 2.763 -3.252 H241 A1ARU 65 A1ARU H242 H27 H 0 0 N N N N N N -5.724 -12.276 -16.270 3.961 2.531 -1.763 H242 A1ARU 66 A1ARU H251 H28 H 0 0 N N N N N N -7.714 -13.722 -15.969 1.770 1.380 -1.612 H251 A1ARU 67 A1ARU H252 H29 H 0 0 N N N N N N -7.111 -14.821 -17.256 0.938 2.925 -1.906 H252 A1ARU 68 A1ARU H4 H30 H 0 1 N N N N N N -13.613 -13.002 -17.411 3.723 -1.362 2.285 H4 A1ARU 69 A1ARU H5 H31 H 0 1 N N N N N N -12.206 -11.020 -15.694 5.616 0.193 3.166 H5 A1ARU 70 A1ARU H62 H32 H 0 1 N N N N N N -13.709 -13.632 -14.415 5.482 -0.354 0.004 H62 A1ARU 71 A1ARU H61 H33 H 0 1 N N N N N N -15.123 -13.273 -15.464 6.003 -1.523 1.242 H61 A1ARU 72 A1ARU H7 H34 H 0 1 N N N N N N -13.125 -15.536 -15.983 4.108 -3.033 0.554 H7 A1ARU 73 A1ARU H82 H35 H 0 1 N N N N N N -15.403 -14.354 -17.458 6.555 -2.727 -0.741 H82 A1ARU 74 A1ARU H81 H36 H 0 1 N N N N N N -14.175 -15.543 -18.011 5.344 -3.957 -1.235 H81 A1ARU 75 A1ARU H92 H37 H 0 1 N N N N N N -16.904 -16.094 -17.324 5.928 -1.241 -2.453 H92 A1ARU 76 A1ARU H91 H38 H 0 1 N N N N N N -15.608 -17.302 -17.619 5.389 -2.743 -3.258 H91 A1ARU 77 A1ARU HN1 H39 H 0 1 N N N N N N -11.333 -13.418 -15.523 3.185 0.389 0.010 HN1 A1ARU 78 A1ARU HN2 H40 H 0 1 N N N N N N -16.469 -17.391 -15.171 3.335 -1.341 -3.033 HN2 A1ARU 79 A1ARU HN3 H41 H 0 1 N N N N N N -9.536 -19.579 -16.520 -4.378 -0.748 -0.612 HN3 A1ARU 80 A1ARU HN4 H42 H 0 1 N N N N N N -13.970 -9.777 -15.798 4.790 2.345 3.094 HN4 A1ARU 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARU O6 C15 DOUB N N 1 A1ARU N3 C15 SING N N 2 A1ARU C15 C16 SING N N 3 A1ARU C N3 SING N N 4 A1ARU C13 C SING N N 5 A1ARU C1 C SING N N 6 A1ARU C14 C13 SING N N 7 A1ARU O4 C13 SING N N 8 A1ARU C17 O4 SING N N 9 A1ARU C18 C17 SING N N 10 A1ARU C19 C17 SING N N 11 A1ARU C20 C17 SING N N 12 A1ARU O C1 DOUB N N 13 A1ARU N C1 SING N N 14 A1ARU C2 N SING N N 15 A1ARU C11 C2 SING N N 16 A1ARU C3 C2 SING N N 17 A1ARU C12 C11 SING N N 18 A1ARU C12 C21 SING N N 19 A1ARU C25 C12 SING N N 20 A1ARU C21 C22 SING N N 21 A1ARU C22 C23 SING N N 22 A1ARU C23 C24 SING N N 23 A1ARU C24 C25 SING N N 24 A1ARU O1 C3 DOUB N N 25 A1ARU N1 C3 SING N N 26 A1ARU C4 N1 SING N N 27 A1ARU C5 C4 SING N N 28 A1ARU C6 C4 SING N N 29 A1ARU N4 C5 DOUB N N 30 A1ARU C7 C6 SING N N 31 A1ARU C7 C10 SING N N 32 A1ARU C8 C7 SING N N 33 A1ARU O3 C10 DOUB N N 34 A1ARU C10 N2 SING N N 35 A1ARU C9 C8 SING N N 36 A1ARU N2 C9 SING N N 37 A1ARU F17 C16 SING N N 38 A1ARU F18 C16 SING N N 39 A1ARU C16 F19 SING N N 40 A1ARU N HN SING N N 41 A1ARU C H0 SING N N 42 A1ARU C11 H111 SING N N 43 A1ARU C11 H112 SING N N 44 A1ARU C12 H12 SING N N 45 A1ARU C13 H13 SING N N 46 A1ARU C14 H142 SING N N 47 A1ARU C14 H141 SING N N 48 A1ARU C14 H143 SING N N 49 A1ARU C18 H181 SING N N 50 A1ARU C18 H183 SING N N 51 A1ARU C18 H182 SING N N 52 A1ARU C19 H191 SING N N 53 A1ARU C19 H192 SING N N 54 A1ARU C19 H193 SING N N 55 A1ARU C2 H2 SING N N 56 A1ARU C20 H201 SING N N 57 A1ARU C20 H203 SING N N 58 A1ARU C20 H202 SING N N 59 A1ARU C21 H212 SING N N 60 A1ARU C21 H211 SING N N 61 A1ARU C22 H221 SING N N 62 A1ARU C22 H222 SING N N 63 A1ARU C23 H231 SING N N 64 A1ARU C23 H232 SING N N 65 A1ARU C24 H241 SING N N 66 A1ARU C24 H242 SING N N 67 A1ARU C25 H251 SING N N 68 A1ARU C25 H252 SING N N 69 A1ARU C4 H4 SING N N 70 A1ARU C5 H5 SING N N 71 A1ARU C6 H62 SING N N 72 A1ARU C6 H61 SING N N 73 A1ARU C7 H7 SING N N 74 A1ARU C8 H82 SING N N 75 A1ARU C8 H81 SING N N 76 A1ARU C9 H92 SING N N 77 A1ARU C9 H91 SING N N 78 A1ARU N1 HN1 SING N N 79 A1ARU N2 HN2 SING N N 80 A1ARU N3 HN3 SING N N 81 A1ARU N4 HN4 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARU SMILES ACDLabs 12.01 "FC(F)(F)C(=O)NC(C(C)OC(C)(C)C)C(=O)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)C=N" A1ARU InChI InChI 1.06 "InChI=1S/C26H42F3N5O5/c1-15(39-25(2,3)4)20(34-24(38)26(27,28)29)23(37)33-19(12-16-8-6-5-7-9-16)22(36)32-18(14-30)13-17-10-11-31-21(17)35/h14-20,30H,5-13H2,1-4H3,(H,31,35)(H,32,36)(H,33,37)(H,34,38)/b30-14+/t15-,17+,18-,19+,20+/m1/s1" A1ARU InChIKey InChI 1.06 FADYJHKUUQIKCT-QWCXJYJXSA-N A1ARU SMILES_CANONICAL CACTVS 3.385 "C[C@@H](OC(C)(C)C)[C@H](NC(=O)C(F)(F)F)C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C=N" A1ARU SMILES CACTVS 3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)C(F)(F)F)C(=O)N[CH](CC1CCCCC1)C(=O)N[CH](C[CH]2CCNC2=O)C=N" A1ARU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)[C@H]([C@@H](C)OC(C)(C)C)NC(=O)C(F)(F)F" A1ARU SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)C=N)NC(=O)C(F)(F)F)OC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARU "SYSTEMATIC NAME" ACDLabs 12.01 "O-tert-butyl-N-(trifluoroacetyl)-L-threonyl-3-cyclohexyl-N-{(2R)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" A1ARU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R})-~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-cyclohexyl-1-oxidanylidene-propan-2-yl]-3-[(2-methylpropan-2-yl)oxy]-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARU "Create component" 2024-05-14 RCSB A1ARU "Modify PCM" 2024-09-27 PDBE A1ARU "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ARU _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #