data_A1ARY # _chem_comp.id A1ARY _chem_comp.name "(2R)-N-[(1M)-3'-chloro[1,1'-biphenyl]-3-yl]-N-(5-chloropyridin-3-yl)-2-hydroxy-2-sulfanylacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H14 Cl2 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-14 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ARY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BSQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ARY N1 N1 N 0 1 N N N N N N -12.898 -13.002 -17.218 1.303 0.185 -0.011 N1 A1ARY 1 A1ARY C4 C1 C 0 1 N N R N N N -12.652 -10.461 -17.101 2.520 2.311 0.328 C4 A1ARY 2 A1ARY C5 C2 C 0 1 Y N N N N N -10.549 -13.578 -17.840 -1.108 0.072 0.032 C5 A1ARY 3 A1ARY C6 C3 C 0 1 Y N N N N N -9.590 -13.861 -18.832 -2.281 -0.675 -0.039 C6 A1ARY 4 A1ARY C7 C4 C 0 1 Y N N N N N -9.947 -13.841 -20.178 -2.215 -2.055 -0.218 C7 A1ARY 5 A1ARY C8 C5 C 0 1 Y N N N N N -11.253 -13.548 -20.537 -0.988 -2.680 -0.325 C8 A1ARY 6 A1ARY C10 C6 C 0 1 Y N N N N N -8.204 -14.174 -18.424 -3.599 -0.002 0.076 C10 A1ARY 7 A1ARY C13 C7 C 0 1 Y N N N N N -5.588 -14.685 -17.525 -6.057 1.254 0.291 C13 A1ARY 8 A1ARY C15 C8 C 0 1 Y N N N N N -7.417 -15.165 -19.029 -3.666 1.379 0.250 C15 A1ARY 9 A1ARY C17 C9 C 0 1 Y N N N N N -14.862 -16.124 -16.551 4.670 -1.231 0.401 C17 A1ARY 10 A1ARY C1 C10 C 0 1 Y N N N N N -13.565 -14.150 -16.627 2.533 -0.424 -0.289 C1 A1ARY 11 A1ARY C11 C11 C 0 1 Y N N N N N -7.663 -13.446 -17.370 -4.773 -0.748 0.005 C11 A1ARY 12 A1ARY C12 C12 C 0 1 Y N N N N N -6.380 -13.701 -16.950 -5.997 -0.117 0.113 C12 A1ARY 13 A1ARY C14 C13 C 0 1 Y N N N N N -6.120 -15.406 -18.587 -4.894 2.000 0.357 C14 A1ARY 14 A1ARY C16 C14 C 0 1 Y N N N N N -14.315 -15.099 -17.305 3.466 -0.624 0.725 C16 A1ARY 15 A1ARY C18 C15 C 0 1 Y N N N N N -14.660 -16.201 -15.190 4.901 -1.616 -0.908 C18 A1ARY 16 A1ARY C19 C16 C 0 1 Y N N N N N -13.389 -14.314 -15.251 2.835 -0.848 -1.577 C19 A1ARY 17 A1ARY C2 C17 C 0 1 Y N N N N N -11.856 -13.271 -18.204 0.120 -0.562 -0.082 C2 A1ARY 18 A1ARY C3 C18 C 0 1 N N N N N N -13.313 -11.765 -16.727 1.257 1.488 0.329 C3 A1ARY 19 A1ARY C9 C19 C 0 1 Y N N N N N -12.199 -13.275 -19.558 0.177 -1.940 -0.254 C9 A1ARY 20 A1ARY N2 N2 N 0 1 Y N N N N N -13.925 -15.307 -14.527 3.993 -1.417 -1.843 N2 A1ARY 21 A1ARY O1 O1 O 0 1 N N N N N N -12.295 -10.362 -18.441 2.214 3.653 0.712 O1 A1ARY 22 A1ARY O2 O2 O 0 1 N N N N N N -14.185 -11.675 -15.867 0.201 1.999 0.635 O2 A1ARY 23 A1ARY CL1 CL1 CL 0 0 N N N N N N -5.825 -12.728 -15.631 -7.462 -1.045 0.025 CL1 A1ARY 24 A1ARY CL2 CL2 CL 0 0 N N N N N N -15.819 -17.338 -17.321 5.875 -1.499 1.621 CL2 A1ARY 25 A1ARY H1 H1 H 0 1 N N N N N N -13.316 -9.632 -16.817 3.232 1.885 1.035 H1 A1ARY 26 A1ARY H2 H3 H 0 1 N N N N N N -10.270 -13.599 -16.797 -1.155 1.142 0.171 H2 A1ARY 27 A1ARY H3 H4 H 0 1 N N N N N N -9.210 -14.053 -20.938 -3.123 -2.637 -0.273 H3 A1ARY 28 A1ARY H4 H5 H 0 1 N N N N N N -11.535 -13.532 -21.579 -0.938 -3.749 -0.463 H4 A1ARY 29 A1ARY H7 H6 H 0 1 N N N N N N -4.591 -14.884 -17.159 -7.016 1.745 0.375 H7 A1ARY 30 A1ARY H9 H7 H 0 1 N N N N N N -7.821 -15.746 -19.845 -2.759 1.962 0.301 H9 A1ARY 31 A1ARY H6 H8 H 0 1 N N N N N N -8.250 -12.682 -16.883 -4.727 -1.818 -0.134 H6 A1ARY 32 A1ARY H8 H9 H 0 1 N N N N N N -5.521 -16.161 -19.074 -4.947 3.070 0.495 H8 A1ARY 33 A1ARY H10 H10 H 0 1 N N N N N N -14.466 -15.041 -18.373 3.258 -0.313 1.738 H10 A1ARY 34 A1ARY H11 H11 H 0 1 N N N N N N -15.113 -17.014 -14.641 5.839 -2.086 -1.167 H11 A1ARY 35 A1ARY H12 H12 H 0 1 N N N N N N -12.778 -13.589 -14.734 2.115 -0.705 -2.369 H12 A1ARY 36 A1ARY H5 H13 H 0 1 N N N N N N -13.217 -13.062 -19.848 1.134 -2.433 -0.338 H5 A1ARY 37 A1ARY H13 H14 H 0 1 N N N N N N -11.887 -9.519 -18.599 1.584 4.096 0.126 H13 A1ARY 38 A1ARY S1 S1 S 0 1 N Y N N N N -11.611 -10.786 -15.605 3.243 2.308 -1.336 S1 A1ARY 39 A1ARY HS HS H 0 1 N Y N N N N -12.421 -11.475 -14.857 4.343 3.068 -1.189 HS A1ARY 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ARY C1 N1 SING N N 1 A1ARY C1 C16 DOUB Y N 2 A1ARY C1 C19 SING Y N 3 A1ARY N1 C2 SING N N 4 A1ARY N1 C3 SING N N 5 A1ARY C2 C5 DOUB Y N 6 A1ARY C2 C9 SING Y N 7 A1ARY C3 C4 SING N N 8 A1ARY C3 O2 DOUB N N 9 A1ARY C4 O1 SING N N 10 A1ARY C5 C6 SING Y N 11 A1ARY C6 C7 DOUB Y N 12 A1ARY C6 C10 SING N N 13 A1ARY C7 C8 SING Y N 14 A1ARY C8 C9 DOUB Y N 15 A1ARY C10 C11 DOUB Y N 16 A1ARY C10 C15 SING Y N 17 A1ARY C11 C12 SING Y N 18 A1ARY C12 C13 DOUB Y N 19 A1ARY C12 CL1 SING N N 20 A1ARY C13 C14 SING Y N 21 A1ARY C14 C15 DOUB Y N 22 A1ARY C16 C17 SING Y N 23 A1ARY C17 C18 DOUB Y N 24 A1ARY C17 CL2 SING N N 25 A1ARY C18 N2 SING Y N 26 A1ARY N2 C19 DOUB Y N 27 A1ARY C4 H1 SING N N 28 A1ARY C5 H2 SING N N 29 A1ARY C7 H3 SING N N 30 A1ARY C8 H4 SING N N 31 A1ARY C13 H7 SING N N 32 A1ARY C15 H9 SING N N 33 A1ARY C11 H6 SING N N 34 A1ARY C14 H8 SING N N 35 A1ARY C16 H10 SING N N 36 A1ARY C18 H11 SING N N 37 A1ARY C19 H12 SING N N 38 A1ARY C9 H5 SING N N 39 A1ARY O1 H13 SING N N 40 A1ARY C4 S1 SING N N 41 A1ARY S1 HS SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ARY SMILES ACDLabs 12.01 "Clc1cc(cnc1)N(C(=O)C(O)S)c1cc(ccc1)c1cccc(Cl)c1" A1ARY InChI InChI 1.06 "InChI=1S/C19H14Cl2N2O2S/c20-14-5-1-3-12(7-14)13-4-2-6-16(8-13)23(18(24)19(25)26)17-9-15(21)10-22-11-17/h1-11,19,25-26H/t19-/m1/s1" A1ARY InChIKey InChI 1.06 IXEUTDXECAJRRN-LJQANCHMSA-N A1ARY SMILES_CANONICAL CACTVS 3.385 "O[C@H](S)C(=O)N(c1cccc(c1)c2cccc(Cl)c2)c3cncc(Cl)c3" A1ARY SMILES CACTVS 3.385 "O[CH](S)C(=O)N(c1cccc(c1)c2cccc(Cl)c2)c3cncc(Cl)c3" A1ARY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)N(c2cc(cnc2)Cl)C(=O)[C@H](O)S)c3cccc(c3)Cl" A1ARY SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)N(c2cc(cnc2)Cl)C(=O)C(O)S)c3cccc(c3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ARY "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-N-[(1M)-3'-chloro[1,1'-biphenyl]-3-yl]-N-(5-chloropyridin-3-yl)-2-hydroxy-2-sulfanylacetamide" A1ARY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-~{N}-(5-chloranylpyridin-3-yl)-~{N}-[3-(3-chlorophenyl)phenyl]-2-oxidanyl-2-sulfanyl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ARY "Create component" 2024-05-14 RCSB A1ARY "Modify PCM" 2024-09-27 PDBE A1ARY "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ARY _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #