data_A1ARZ
#
_chem_comp.id A1ARZ
_chem_comp.name "2-methyl-2-{5-[(3-{4-[(1-methylpiperidin-4-yl)amino]-1-(2,2,2-trifluoroethyl)-1H-indol-2-yl}prop-2-yn-1-yl)amino]pyridin-2-yl}propanenitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H31 F3 N6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-05-14
_chem_comp.pdbx_modified_date 2024-12-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 508.581
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1ARZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BR4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1ARZ C10 C1 C 0 1 Y N N N N N 124.597 -68.518 43.762 3.284 -0.345 -0.496 C10 A1ARZ 1
A1ARZ C13 C2 C 0 1 N N N N N N 124.923 -65.429 45.647 -0.304 0.324 -0.214 C13 A1ARZ 2
A1ARZ C15 C3 C 0 1 N N N N N N 125.436 -63.585 47.471 -2.766 1.251 0.073 C15 A1ARZ 3
A1ARZ C17 C4 C 0 1 Y N N N N N 123.465 -63.627 49.004 -5.094 0.405 0.001 C17 A1ARZ 4
A1ARZ C20 C5 C 0 1 Y N N N N N 121.830 -64.939 50.787 -7.749 0.970 0.212 C20 A1ARZ 5
A1ARZ C22 C6 C 0 1 Y N N N N N 123.788 -64.875 49.557 -5.561 1.686 0.270 C22 A1ARZ 6
A1ARZ C24 C7 C 0 1 N N N N N N 119.623 -66.046 51.045 -9.376 2.672 0.989 C24 A1ARZ 7
A1ARZ C26 C8 C 0 1 N N N N N N 120.639 -64.786 52.880 -9.824 1.321 -1.007 C26 A1ARZ 8
A1ARZ C01 C9 C 0 1 N N N N N N 125.406 -76.306 45.224 10.494 2.847 0.813 C01 A1ARZ 9
A1ARZ C03 C10 C 0 1 N N N N N N 125.904 -74.177 44.147 8.554 2.883 -0.635 C03 A1ARZ 10
A1ARZ C04 C11 C 0 1 N N N N N N 125.794 -72.635 44.233 7.035 2.698 -0.668 C04 A1ARZ 11
A1ARZ C05 C12 C 0 1 N N N N N N 124.320 -72.226 44.312 6.694 1.247 -0.320 C05 A1ARZ 12
A1ARZ C06 C13 C 0 1 N N N N N N 123.641 -72.926 45.504 7.274 0.911 1.057 C06 A1ARZ 13
A1ARZ C07 C14 C 0 1 N N N N N N 123.827 -74.451 45.386 8.786 1.147 1.041 C07 A1ARZ 14
A1ARZ C09 C15 C 0 1 Y N N N N N 124.436 -69.883 43.454 4.678 -0.178 -0.520 C09 A1ARZ 15
A1ARZ C11 C16 C 0 1 Y N N N N N 124.641 -67.818 45.017 2.162 0.562 -0.269 C11 A1ARZ 16
A1ARZ C12 C17 C 0 1 Y N N N N N 124.822 -66.513 44.746 1.028 -0.179 -0.369 C12 A1ARZ 17
A1ARZ C14 C18 C 0 1 N N N N N N 125.047 -64.564 46.448 -1.396 0.735 -0.086 C14 A1ARZ 18
A1ARZ C18 C19 C 0 1 Y N N N N N 122.260 -63.067 49.389 -6.014 -0.627 -0.166 C18 A1ARZ 19
A1ARZ C19 C20 C 0 1 Y N N N N N 121.445 -63.722 50.284 -7.363 -0.330 -0.057 C19 A1ARZ 20
A1ARZ C23 C21 C 0 1 N N N N N N 120.941 -65.688 51.771 -9.215 1.299 0.333 C23 A1ARZ 21
A1ARZ C25 C22 C 0 1 N N N N N N 121.606 -66.978 52.306 -9.908 0.239 1.191 C25 A1ARZ 22
A1ARZ C29 C23 C 0 1 N N N N N N 125.105 -65.098 42.670 0.397 -2.581 -0.818 C29 A1ARZ 23
A1ARZ C30 C24 C 0 1 N N N N N N 126.538 -64.826 42.342 0.115 -3.233 0.537 C30 A1ARZ 24
A1ARZ C34 C25 C 0 1 Y N N N N N 124.775 -67.569 42.750 2.727 -1.618 -0.719 C34 A1ARZ 25
A1ARZ C35 C26 C 0 1 Y N N N N N 124.790 -67.918 41.405 3.569 -2.699 -0.967 C35 A1ARZ 26
A1ARZ C36 C27 C 0 1 Y N N N N N 124.626 -69.245 41.121 4.935 -2.523 -0.981 C36 A1ARZ 27
A1ARZ C37 C28 C 0 1 Y N N N N N 124.452 -70.230 42.109 5.491 -1.269 -0.771 C37 A1ARZ 28
A1ARZ F31 F1 F 0 1 N N N N N N 126.681 -63.647 41.718 1.307 -3.740 1.068 F31 A1ARZ 29
A1ARZ F32 F2 F 0 1 N N N N N N 127.302 -64.833 43.453 -0.417 -2.280 1.412 F32 A1ARZ 30
A1ARZ F33 F3 F 0 1 N N N N N N 127.042 -65.773 41.526 -0.802 -4.277 0.370 F33 A1ARZ 31
A1ARZ N02 N1 N 0 1 N N N N N N 125.235 -74.853 45.267 9.060 2.550 0.703 N02 A1ARZ 32
A1ARZ N08 N2 N 0 1 N N N N N N 124.267 -70.779 44.466 5.240 1.079 -0.293 N08 A1ARZ 33
A1ARZ N16 N3 N 0 1 N N N N N N 124.277 -62.983 48.106 -3.724 0.158 -0.105 N16 A1ARZ 34
A1ARZ N21 N4 N 0 1 Y N N N N N 122.993 -65.496 50.425 -6.853 1.925 0.366 N21 A1ARZ 35
A1ARZ N27 N5 N 0 1 N N N N N N 120.413 -64.067 53.732 -10.295 1.338 -2.041 N27 A1ARZ 36
A1ARZ N28 N6 N 0 1 Y N N N N N 124.917 -66.344 43.356 1.358 -1.489 -0.644 N28 A1ARZ 37
A1ARZ H1 H1 H 0 1 N N N N N N 126.040 -64.092 48.238 -2.880 1.676 1.071 H1 A1ARZ 38
A1ARZ H2 H2 H 0 1 N N N N N N 126.035 -62.793 46.997 -2.952 2.023 -0.673 H2 A1ARZ 39
A1ARZ H3 H3 H 0 1 N N N N N N 124.715 -65.349 49.268 -4.857 2.495 0.402 H3 A1ARZ 40
A1ARZ H4 H4 H 0 1 N N N N N N 118.960 -66.589 51.734 -8.883 3.428 0.377 H4 A1ARZ 41
A1ARZ H5 H5 H 0 1 N N N N N N 119.127 -65.123 50.710 -10.436 2.911 1.076 H5 A1ARZ 42
A1ARZ H6 H6 H 0 1 N N N N N N 119.845 -66.680 50.174 -8.925 2.656 1.981 H6 A1ARZ 43
A1ARZ H7 H7 H 0 1 N N N N N N 124.888 -76.762 46.081 10.660 3.909 0.631 H7 A1ARZ 44
A1ARZ H8 H8 H 0 1 N N N N N N 124.981 -76.698 44.288 10.842 2.591 1.814 H8 A1ARZ 45
A1ARZ H9 H9 H 0 1 N N N N N N 126.477 -76.551 45.271 11.044 2.262 0.076 H9 A1ARZ 46
A1ARZ H10 H10 H 0 1 N N N N N N 125.442 -74.512 43.206 9.016 2.226 -1.371 H10 A1ARZ 47
A1ARZ H11 H11 H 0 1 N N N N N N 126.968 -74.455 44.152 8.800 3.919 -0.868 H11 A1ARZ 48
A1ARZ H12 H12 H 0 1 N N N N N N 126.320 -72.280 45.131 6.572 3.365 0.059 H12 A1ARZ 49
A1ARZ H13 H13 H 0 1 N N N N N N 126.251 -72.185 43.339 6.663 2.931 -1.666 H13 A1ARZ 50
A1ARZ H14 H14 H 0 1 N N N N N N 123.813 -72.527 43.384 7.124 0.582 -1.069 H14 A1ARZ 51
A1ARZ H15 H15 H 0 1 N N N N N N 124.095 -72.574 46.442 6.814 1.550 1.811 H15 A1ARZ 52
A1ARZ H16 H16 H 0 1 N N N N N N 122.567 -72.688 45.505 7.070 -0.134 1.292 H16 A1ARZ 53
A1ARZ H17 H17 H 0 1 N N N N N N 123.286 -74.802 44.494 9.199 0.922 2.024 H17 A1ARZ 54
A1ARZ H18 H18 H 0 1 N N N N N N 123.402 -74.926 46.283 9.247 0.498 0.296 H18 A1ARZ 55
A1ARZ H19 H19 H 0 1 N N N N N N 124.546 -68.259 45.998 2.223 1.620 -0.060 H19 A1ARZ 56
A1ARZ H20 H20 H 0 1 N N N N N N 121.958 -62.112 48.986 -5.684 -1.633 -0.377 H20 A1ARZ 57
A1ARZ H21 H21 H 0 1 N N N N N N 120.508 -63.280 50.589 -8.105 -1.106 -0.181 H21 A1ARZ 58
A1ARZ H22 H22 H 0 1 N N N N N N 120.924 -67.478 53.010 -9.456 0.223 2.183 H22 A1ARZ 59
A1ARZ H23 H23 H 0 1 N N N N N N 121.825 -67.653 51.466 -10.967 0.478 1.278 H23 A1ARZ 60
A1ARZ H24 H24 H 0 1 N N N N N N 122.542 -66.720 52.823 -9.792 -0.739 0.724 H24 A1ARZ 61
A1ARZ H25 H25 H 0 1 N N N N N N 124.731 -64.285 43.310 0.812 -3.324 -1.500 H25 A1ARZ 62
A1ARZ H26 H26 H 0 1 N N N N N N 124.529 -65.122 41.733 -0.531 -2.186 -1.231 H26 A1ARZ 63
A1ARZ H27 H27 H 0 1 N N N N N N 124.924 -67.181 40.627 3.149 -3.678 -1.148 H27 A1ARZ 64
A1ARZ H28 H28 H 0 1 N N N N N N 124.630 -69.552 40.086 5.580 -3.367 -1.174 H28 A1ARZ 65
A1ARZ H29 H29 H 0 1 N N N N N N 124.330 -71.264 41.820 6.564 -1.148 -0.785 H29 A1ARZ 66
A1ARZ H31 H31 H 0 1 N N N N N N 124.970 -70.556 45.141 4.666 1.841 -0.118 H31 A1ARZ 67
A1ARZ H32 H32 H 0 1 N N N N N N 124.621 -62.175 48.585 -3.406 -0.739 -0.297 H32 A1ARZ 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1ARZ C36 C35 DOUB Y N 1
A1ARZ C36 C37 SING Y N 2
A1ARZ C35 C34 SING Y N 3
A1ARZ F33 C30 SING N N 4
A1ARZ F31 C30 SING N N 5
A1ARZ C37 C09 DOUB Y N 6
A1ARZ C30 C29 SING N N 7
A1ARZ C30 F32 SING N N 8
A1ARZ C29 N28 SING N N 9
A1ARZ C34 N28 SING Y N 10
A1ARZ C34 C10 DOUB Y N 11
A1ARZ N28 C12 SING Y N 12
A1ARZ C09 C10 SING Y N 13
A1ARZ C09 N08 SING N N 14
A1ARZ C10 C11 SING Y N 15
A1ARZ C03 C04 SING N N 16
A1ARZ C03 N02 SING N N 17
A1ARZ C04 C05 SING N N 18
A1ARZ C05 N08 SING N N 19
A1ARZ C05 C06 SING N N 20
A1ARZ C12 C11 DOUB Y N 21
A1ARZ C12 C13 SING N N 22
A1ARZ C01 N02 SING N N 23
A1ARZ N02 C07 SING N N 24
A1ARZ C07 C06 SING N N 25
A1ARZ C13 C14 TRIP N N 26
A1ARZ C14 C15 SING N N 27
A1ARZ C15 N16 SING N N 28
A1ARZ N16 C17 SING N N 29
A1ARZ C17 C18 DOUB Y N 30
A1ARZ C17 C22 SING Y N 31
A1ARZ C18 C19 SING Y N 32
A1ARZ C22 N21 DOUB Y N 33
A1ARZ C19 C20 DOUB Y N 34
A1ARZ N21 C20 SING Y N 35
A1ARZ C20 C23 SING N N 36
A1ARZ C24 C23 SING N N 37
A1ARZ C23 C25 SING N N 38
A1ARZ C23 C26 SING N N 39
A1ARZ C26 N27 TRIP N N 40
A1ARZ C15 H1 SING N N 41
A1ARZ C15 H2 SING N N 42
A1ARZ C22 H3 SING N N 43
A1ARZ C24 H4 SING N N 44
A1ARZ C24 H5 SING N N 45
A1ARZ C24 H6 SING N N 46
A1ARZ C01 H7 SING N N 47
A1ARZ C01 H8 SING N N 48
A1ARZ C01 H9 SING N N 49
A1ARZ C03 H10 SING N N 50
A1ARZ C03 H11 SING N N 51
A1ARZ C04 H12 SING N N 52
A1ARZ C04 H13 SING N N 53
A1ARZ C05 H14 SING N N 54
A1ARZ C06 H15 SING N N 55
A1ARZ C06 H16 SING N N 56
A1ARZ C07 H17 SING N N 57
A1ARZ C07 H18 SING N N 58
A1ARZ C11 H19 SING N N 59
A1ARZ C18 H20 SING N N 60
A1ARZ C19 H21 SING N N 61
A1ARZ C25 H22 SING N N 62
A1ARZ C25 H23 SING N N 63
A1ARZ C25 H24 SING N N 64
A1ARZ C29 H25 SING N N 65
A1ARZ C29 H26 SING N N 66
A1ARZ C35 H27 SING N N 67
A1ARZ C36 H28 SING N N 68
A1ARZ C37 H29 SING N N 69
A1ARZ N08 H31 SING N N 70
A1ARZ N16 H32 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1ARZ SMILES ACDLabs 12.01 "CN1CCC(Nc2cccc3n(CC(F)(F)F)c(C#CCNc4ccc(nc4)C(C)(C)C#N)cc23)CC1"
A1ARZ InChI InChI 1.06 "InChI=1S/C28H31F3N6/c1-27(2,18-32)26-10-9-21(17-34-26)33-13-5-6-22-16-23-24(35-20-11-14-36(3)15-12-20)7-4-8-25(23)37(22)19-28(29,30)31/h4,7-10,16-17,20,33,35H,11-15,19H2,1-3H3"
A1ARZ InChIKey InChI 1.06 ZEIVMOHWKJFVMK-UHFFFAOYSA-N
A1ARZ SMILES_CANONICAL CACTVS 3.385 "CN1CCC(CC1)Nc2cccc3n(CC(F)(F)F)c(cc23)C#CCNc4ccc(nc4)C(C)(C)C#N"
A1ARZ SMILES CACTVS 3.385 "CN1CCC(CC1)Nc2cccc3n(CC(F)(F)F)c(cc23)C#CCNc4ccc(nc4)C(C)(C)C#N"
A1ARZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C#N)c1ccc(cn1)NCC#Cc2cc3c(cccc3n2CC(F)(F)F)NC4CCN(CC4)C"
A1ARZ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C#N)c1ccc(cn1)NCC#Cc2cc3c(cccc3n2CC(F)(F)F)NC4CCN(CC4)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1ARZ "SYSTEMATIC NAME" ACDLabs 12.01 "2-methyl-2-{5-[(3-{4-[(1-methylpiperidin-4-yl)amino]-1-(2,2,2-trifluoroethyl)-1H-indol-2-yl}prop-2-yn-1-yl)amino]pyridin-2-yl}propanenitrile"
A1ARZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-methyl-2-[5-[3-[4-[(1-methylpiperidin-4-yl)amino]-1-[2,2,2-tris(fluoranyl)ethyl]indol-2-yl]prop-2-ynylamino]pyridin-2-yl]propanenitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1ARZ "Create component" 2024-05-14 RCSB
A1ARZ "Initial release" 2024-12-18 RCSB
#