data_A1AS5
#
_chem_comp.id A1AS5
_chem_comp.name "(3S)-1-(N-carbamimidoylglycyl)-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H19 Cl F N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-05-28
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 355.795
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AS5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BXB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AS5 C10 C1 C 0 1 N N N N N N -2.438 16.709 -12.651 -0.950 -0.991 0.244 C10 A1AS5 1
A1AS5 CD C2 C 0 1 N N N N N N 0.415 13.851 -8.623 5.091 0.020 -0.215 CD A1AS5 2
A1AS5 NE N1 N 0 1 N N N N N N 0.423 13.139 -7.314 5.871 1.217 0.111 NE A1AS5 3
A1AS5 CZ C3 C 0 1 N N N N N N 1.442 13.512 -6.348 7.241 1.142 0.197 CZ A1AS5 4
A1AS5 NH1 N2 N 0 1 N N N N N N 1.439 12.950 -5.246 7.973 2.265 0.503 NH1 A1AS5 5
A1AS5 NH2 N3 N 0 1 N N N N N N 2.302 14.368 -6.602 7.846 0.007 -0.012 NH2 A1AS5 6
A1AS5 C06 C4 C 0 1 N N N N N N -0.117 15.302 -8.352 3.626 0.368 -0.246 C06 A1AS5 7
A1AS5 C08 C5 C 0 1 N N N N N N -1.510 15.521 -10.666 1.280 -0.258 -0.562 C08 A1AS5 8
A1AS5 C09 C6 C 0 1 N N S N N N -1.120 16.616 -11.772 0.534 -1.221 0.367 C09 A1AS5 9
A1AS5 C13 C7 C 0 1 Y N N N N N -3.161 16.709 -15.156 -2.833 0.462 0.325 C13 A1AS5 10
A1AS5 C14 C8 C 0 1 Y N N N N N -4.478 16.589 -14.974 -3.761 -0.550 0.527 C14 A1AS5 11
A1AS5 C15 C9 C 0 1 Y N N N N N -5.337 16.513 -16.129 -5.106 -0.305 0.317 C15 A1AS5 12
A1AS5 C17 C10 C 0 1 Y N N N N N -4.812 16.509 -17.396 -5.526 0.950 -0.096 C17 A1AS5 13
A1AS5 C19 C11 C 0 1 Y N N N N N -3.487 16.582 -17.570 -4.601 1.959 -0.298 C19 A1AS5 14
A1AS5 C20 C12 C 0 1 Y N N N N N -2.643 16.656 -16.445 -3.257 1.720 -0.082 C20 A1AS5 15
A1AS5 C21 C13 C 0 1 N N N N N N -0.309 17.695 -11.203 0.862 -2.662 -0.029 C21 A1AS5 16
A1AS5 C22 C14 C 0 1 N N N N N N -0.255 17.918 -9.764 2.364 -2.907 0.127 C22 A1AS5 17
A1AS5 C23 C15 C 0 1 N N N N N N -1.531 17.371 -9.155 3.131 -1.964 -0.804 C23 A1AS5 18
A1AS5 F16 F1 F 0 1 N N N N N N -6.726 16.445 -16.001 -6.011 -1.289 0.512 F16 A1AS5 19
A1AS5 N07 N4 N 0 1 N N N N N N -1.057 15.984 -9.322 2.713 -0.583 -0.527 N07 A1AS5 20
A1AS5 N12 N5 N 0 1 N N N N N N -2.175 16.749 -14.088 -1.471 0.217 0.538 N12 A1AS5 21
A1AS5 O11 O1 O 0 1 N N N N N N -3.585 16.604 -12.192 -1.675 -1.890 -0.125 O11 A1AS5 22
A1AS5 O24 O2 O 0 1 N N N N N N 0.226 15.908 -7.292 3.267 1.505 -0.019 O24 A1AS5 23
A1AS5 CL1 CL1 CL 0 0 N N N N N N -5.860 16.409 -18.773 -7.214 1.256 -0.360 CL1 A1AS5 24
A1AS5 H1 H1 H 0 1 N N N N N N -0.247 13.332 -9.331 5.396 -0.358 -1.191 H1 A1AS5 25
A1AS5 H2 H2 H 0 1 N N N N N N 1.433 13.893 -9.037 5.267 -0.745 0.542 H2 A1AS5 26
A1AS5 H3 H3 H 0 1 N N N N N N -0.250 12.429 -7.108 5.420 2.062 0.266 H3 A1AS5 27
A1AS5 H4 H4 H 0 1 N N N N N N 2.129 13.186 -4.562 7.522 3.110 0.658 H4 A1AS5 28
A1AS5 H5 H5 H 0 1 N N N N N N 0.746 12.259 -5.039 8.939 2.213 0.563 H5 A1AS5 29
A1AS5 H6 H6 H 0 1 N N N N N N 2.929 14.509 -5.835 8.813 -0.045 0.049 H6 A1AS5 30
A1AS5 H7 H7 H 0 1 N N N N N N -2.601 15.382 -10.657 0.905 -0.368 -1.579 H7 A1AS5 31
A1AS5 H8 H8 H 0 1 N N N N N N -1.021 14.566 -10.908 1.130 0.768 -0.225 H8 A1AS5 32
A1AS5 H9 H9 H 0 1 N N N N N N -0.423 16.070 -12.425 0.845 -1.047 1.397 H9 A1AS5 33
A1AS5 H10 H10 H 0 1 N N N N N N -4.893 16.550 -13.978 -3.434 -1.528 0.848 H10 A1AS5 34
A1AS5 H11 H11 H 0 1 N N N N N N -3.068 16.584 -18.566 -4.930 2.936 -0.620 H11 A1AS5 35
A1AS5 H12 H12 H 0 1 N N N N N N -1.572 16.672 -16.586 -2.536 2.508 -0.240 H12 A1AS5 36
A1AS5 H13 H13 H 0 1 N N N N N N 0.726 17.514 -11.530 0.313 -3.350 0.615 H13 A1AS5 37
A1AS5 H14 H14 H 0 1 N N N N N N -0.676 18.631 -11.650 0.573 -2.828 -1.067 H14 A1AS5 38
A1AS5 H15 H15 H 0 1 N N N N N N 0.615 17.397 -9.338 2.658 -2.718 1.160 H15 A1AS5 39
A1AS5 H16 H16 H 0 1 N N N N N N -0.175 18.995 -9.556 2.594 -3.941 -0.132 H16 A1AS5 40
A1AS5 H17 H17 H 0 1 N N N N N N -1.683 17.665 -8.106 4.202 -2.064 -0.625 H17 A1AS5 41
A1AS5 H18 H18 H 0 1 N N N N N N -2.435 17.604 -9.736 2.909 -2.214 -1.841 H18 A1AS5 42
A1AS5 H19 H19 H 0 1 N N N N N N -1.216 16.810 -14.366 -0.903 0.916 0.896 H19 A1AS5 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AS5 CL1 C17 SING N N 1
A1AS5 C19 C17 DOUB Y N 2
A1AS5 C19 C20 SING Y N 3
A1AS5 C17 C15 SING Y N 4
A1AS5 C20 C13 DOUB Y N 5
A1AS5 C15 F16 SING N N 6
A1AS5 C15 C14 DOUB Y N 7
A1AS5 C13 C14 SING Y N 8
A1AS5 C13 N12 SING N N 9
A1AS5 N12 C10 SING N N 10
A1AS5 C10 O11 DOUB N N 11
A1AS5 C10 C09 SING N N 12
A1AS5 C09 C21 SING N N 13
A1AS5 C09 C08 SING N N 14
A1AS5 C21 C22 SING N N 15
A1AS5 C08 N07 SING N N 16
A1AS5 C22 C23 SING N N 17
A1AS5 N07 C23 SING N N 18
A1AS5 N07 C06 SING N N 19
A1AS5 CD C06 SING N N 20
A1AS5 CD NE SING N N 21
A1AS5 C06 O24 DOUB N N 22
A1AS5 NE CZ SING N N 23
A1AS5 NH2 CZ DOUB N N 24
A1AS5 CZ NH1 SING N N 25
A1AS5 CD H1 SING N N 26
A1AS5 CD H2 SING N N 27
A1AS5 NE H3 SING N N 28
A1AS5 NH1 H4 SING N N 29
A1AS5 NH1 H5 SING N N 30
A1AS5 NH2 H6 SING N N 31
A1AS5 C08 H7 SING N N 32
A1AS5 C08 H8 SING N N 33
A1AS5 C09 H9 SING N N 34
A1AS5 C14 H10 SING N N 35
A1AS5 C19 H11 SING N N 36
A1AS5 C20 H12 SING N N 37
A1AS5 C21 H13 SING N N 38
A1AS5 C21 H14 SING N N 39
A1AS5 C22 H15 SING N N 40
A1AS5 C22 H16 SING N N 41
A1AS5 C23 H17 SING N N 42
A1AS5 C23 H18 SING N N 43
A1AS5 N12 H19 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AS5 SMILES ACDLabs 12.01 "O=C(CNC(=N)N)N1CCCC(C1)C(=O)Nc1ccc(Cl)c(F)c1"
A1AS5 InChI InChI 1.06 "InChI=1S/C15H19ClFN5O2/c16-11-4-3-10(6-12(11)17)21-14(24)9-2-1-5-22(8-9)13(23)7-20-15(18)19/h3-4,6,9H,1-2,5,7-8H2,(H,21,24)(H4,18,19,20)/t9-/m0/s1"
A1AS5 InChIKey InChI 1.06 NBLPJIDEKHAZOD-VIFPVBQESA-N
A1AS5 SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCC(=O)N1CCC[C@@H](C1)C(=O)Nc2ccc(Cl)c(F)c2"
A1AS5 SMILES CACTVS 3.385 "NC(=N)NCC(=O)N1CCC[CH](C1)C(=O)Nc2ccc(Cl)c(F)c2"
A1AS5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCC(=O)N1CCC[C@@H](C1)C(=O)Nc2ccc(c(c2)F)Cl"
A1AS5 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CCCN(C2)C(=O)CNC(=N)N)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AS5 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-1-(N-carbamimidoylglycyl)-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
A1AS5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-1-(2-carbamimidamidoethanoyl)-~{N}-(4-chloranyl-3-fluoranyl-phenyl)piperidine-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AS5 "Create component" 2024-05-28 RCSB
A1AS5 "Initial release" 2025-04-02 RCSB
#