data_A1AS8
#
_chem_comp.id A1AS8
_chem_comp.name "(3S)-1-[4-(2-carbamimidamidoethyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H29 Cl F N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-05-28
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 453.941
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AS8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BXF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AS8 C10 C1 C 0 1 N N N N N N -2.635 17.539 -14.602 -3.113 1.002 -0.406 C10 A1AS8 1
A1AS8 CD C2 C 0 1 N N N N N N -1.968 10.196 -7.990 7.447 -0.221 0.497 CD A1AS8 2
A1AS8 NE N1 N 0 1 N N N N N N -1.651 10.056 -6.523 8.640 -0.811 1.109 NE A1AS8 3
A1AS8 CZ C3 C 0 1 N N N N N N -1.565 8.655 -5.860 9.565 -0.005 1.730 CZ A1AS8 4
A1AS8 NH1 N2 N 0 1 N N N N N N -1.317 8.508 -4.635 9.369 1.355 1.777 NH1 A1AS8 5
A1AS8 NH2 N3 N 0 1 N N N N N N -1.774 7.637 -6.557 10.626 -0.530 2.274 NH2 A1AS8 6
A1AS8 C01 C4 C 0 1 N N N N N N -1.899 11.677 -8.463 6.590 -1.327 -0.121 C01 A1AS8 7
A1AS8 C03 C5 C 0 1 N N N N N N -0.033 12.840 -8.331 4.522 -0.136 0.284 C03 A1AS8 8
A1AS8 C04 C6 C 0 1 N N N N N N -0.290 14.352 -8.397 3.384 0.625 -0.405 C04 A1AS8 9
A1AS8 C06 C7 C 0 1 N N N N N N -1.031 16.321 -9.757 1.372 -0.442 -1.316 C06 A1AS8 10
A1AS8 C08 C8 C 0 1 N N N N N N -1.503 16.732 -12.396 -0.788 0.138 -0.320 C08 A1AS8 11
A1AS8 C09 C9 C 0 1 N N S N N N -1.493 17.818 -13.523 -1.699 1.242 -0.868 C09 A1AS8 12
A1AS8 C13 C10 C 0 1 Y N N N N N -3.320 17.315 -17.111 -5.021 -0.409 -0.229 C13 A1AS8 13
A1AS8 C14 C11 C 0 1 Y N N N N N -4.715 17.327 -16.881 -5.928 0.626 -0.044 C14 A1AS8 14
A1AS8 C15 C12 C 0 1 Y N N N N N -5.598 17.084 -17.937 -7.188 0.358 0.461 C15 A1AS8 15
A1AS8 C17 C13 C 0 1 Y N N N N N -5.107 16.827 -19.233 -7.543 -0.942 0.783 C17 A1AS8 16
A1AS8 C19 C14 C 0 1 Y N N N N N -3.721 16.813 -19.463 -6.640 -1.974 0.600 C19 A1AS8 17
A1AS8 C20 C15 C 0 1 Y N N N N N -2.839 17.055 -18.410 -5.383 -1.711 0.089 C20 A1AS8 18
A1AS8 C21 C16 C 0 1 N N N N N N -1.756 19.204 -13.114 -1.216 2.599 -0.351 C21 A1AS8 19
A1AS8 C22 C17 C 0 1 N N N N N N -1.013 19.356 -11.873 0.209 2.858 -0.846 C22 A1AS8 20
A1AS8 C23 C18 C 0 1 N N N N N N -1.785 18.592 -10.795 1.141 1.773 -0.298 C23 A1AS8 21
A1AS8 C25 C19 C 0 1 N N N N N N -0.414 13.828 -10.699 3.537 -1.033 -2.304 C25 A1AS8 22
A1AS8 C26 C20 C 0 1 N N N N N N -1.004 12.418 -10.445 4.669 -1.728 -1.539 C26 A1AS8 23
A1AS8 F16 F1 F 0 1 N N N N N N -6.931 17.089 -17.742 -8.071 1.364 0.641 F16 A1AS8 24
A1AS8 N02 N4 N 0 1 N N N N N N -0.836 11.995 -9.104 5.394 -0.735 -0.735 N02 A1AS8 25
A1AS8 N05 N5 N 0 1 N N N N N N -0.620 14.846 -9.681 2.711 -0.289 -1.341 N05 A1AS8 26
A1AS8 N07 N6 N 0 1 N N N N N N -1.422 17.153 -10.963 0.603 0.456 -0.668 N07 A1AS8 27
A1AS8 N12 N7 N 0 1 N N N N N N -2.325 17.563 -16.047 -3.746 -0.140 -0.740 N12 A1AS8 28
A1AS8 O11 O1 O 0 1 N N N N N N -3.727 17.344 -14.215 -3.680 1.834 0.269 O11 A1AS8 29
A1AS8 O24 O2 O 0 1 N N N N N N -1.064 16.925 -8.686 0.857 -1.389 -1.877 O24 A1AS8 30
A1AS8 CL1 CL1 CL 0 0 N N N N N N -6.248 16.522 -20.558 -9.124 -1.277 1.417 CL1 A1AS8 31
A1AS8 H1 H1 H 0 1 N N N N N N -2.983 9.812 -8.172 6.870 0.304 1.258 H1 A1AS8 32
A1AS8 H2 H2 H 0 1 N N N N N N -1.243 9.605 -8.568 7.747 0.483 -0.280 H2 A1AS8 33
A1AS8 H3 H3 H 0 1 N N N N N N -1.494 10.875 -5.971 8.778 -1.771 1.075 H3 A1AS8 34
A1AS8 H4 H4 H 0 1 N N N N N N -1.168 9.309 -4.055 8.580 1.746 1.372 H4 A1AS8 35
A1AS8 H5 H5 H 0 1 N N N N N N -1.269 7.590 -4.241 10.022 1.924 2.215 H5 A1AS8 36
A1AS8 H6 H6 H 0 1 N N N N N N -1.713 6.796 -6.019 11.278 0.039 2.713 H6 A1AS8 37
A1AS8 H7 H7 H 0 1 N N N N N N -1.967 12.322 -7.574 7.168 -1.852 -0.883 H7 A1AS8 38
A1AS8 H8 H8 H 0 1 N N N N N N -2.762 11.865 -9.119 6.290 -2.031 0.655 H8 A1AS8 39
A1AS8 H9 H9 H 0 1 N N N N N N -0.155 12.535 -7.281 5.101 0.554 0.898 H9 A1AS8 40
A1AS8 H10 H10 H 0 1 N N N N N N 1.009 12.673 -8.642 4.105 -0.921 0.914 H10 A1AS8 41
A1AS8 H11 H11 H 0 1 N N N N N N 0.620 14.868 -8.056 2.671 0.974 0.342 H11 A1AS8 42
A1AS8 H12 H12 H 0 1 N N N N N N -1.122 14.587 -7.717 3.790 1.477 -0.951 H12 A1AS8 43
A1AS8 H13 H13 H 0 1 N N N N N N -2.437 16.163 -12.509 -0.890 0.085 0.764 H13 A1AS8 44
A1AS8 H14 H14 H 0 1 N N N N N N -0.645 16.070 -12.583 -1.065 -0.820 -0.760 H14 A1AS8 45
A1AS8 H15 H15 H 0 1 N N N N N N -0.523 17.767 -14.039 -1.665 1.233 -1.957 H15 A1AS8 46
A1AS8 H16 H16 H 0 1 N N N N N N -5.098 17.524 -15.891 -5.651 1.640 -0.295 H16 A1AS8 47
A1AS8 H17 H17 H 0 1 N N N N N N -3.339 16.615 -20.454 -6.919 -2.986 0.852 H17 A1AS8 48
A1AS8 H18 H18 H 0 1 N N N N N N -1.775 17.043 -18.592 -4.679 -2.517 -0.053 H18 A1AS8 49
A1AS8 H19 H19 H 0 1 N N N N N N -1.394 19.911 -13.875 -1.877 3.384 -0.720 H19 A1AS8 50
A1AS8 H20 H20 H 0 1 N N N N N N -2.831 19.364 -12.947 -1.227 2.597 0.739 H20 A1AS8 51
A1AS8 H21 H21 H 0 1 N N N N N N -0.002 18.936 -11.984 0.225 2.835 -1.936 H21 A1AS8 52
A1AS8 H22 H22 H 0 1 N N N N N N -0.940 20.420 -11.604 0.543 3.835 -0.498 H22 A1AS8 53
A1AS8 H23 H23 H 0 1 N N N N N N -1.493 18.945 -9.795 2.135 1.895 -0.727 H23 A1AS8 54
A1AS8 H24 H24 H 0 1 N N N N N N -2.868 18.730 -10.931 1.198 1.855 0.787 H24 A1AS8 55
A1AS8 H25 H25 H 0 1 N N N N N N 0.672 13.710 -10.829 3.959 -0.342 -3.034 H25 A1AS8 56
A1AS8 H26 H26 H 0 1 N N N N N N -0.856 14.205 -11.633 2.926 -1.779 -2.812 H26 A1AS8 57
A1AS8 H27 H27 H 0 1 N N N N N N -2.079 12.438 -10.677 4.250 -2.492 -0.884 H27 A1AS8 58
A1AS8 H28 H28 H 0 1 N N N N N N -0.499 11.700 -11.108 5.355 -2.193 -2.248 H28 A1AS8 59
A1AS8 H30 H30 H 0 1 N N N N N N -1.384 17.759 -16.322 -3.318 -0.776 -1.334 H30 A1AS8 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AS8 CL1 C17 SING N N 1
A1AS8 C19 C17 DOUB Y N 2
A1AS8 C19 C20 SING Y N 3
A1AS8 C17 C15 SING Y N 4
A1AS8 C20 C13 DOUB Y N 5
A1AS8 C15 F16 SING N N 6
A1AS8 C15 C14 DOUB Y N 7
A1AS8 C13 C14 SING Y N 8
A1AS8 C13 N12 SING N N 9
A1AS8 N12 C10 SING N N 10
A1AS8 C10 O11 DOUB N N 11
A1AS8 C10 C09 SING N N 12
A1AS8 C09 C21 SING N N 13
A1AS8 C09 C08 SING N N 14
A1AS8 C21 C22 SING N N 15
A1AS8 C08 N07 SING N N 16
A1AS8 C22 C23 SING N N 17
A1AS8 N07 C23 SING N N 18
A1AS8 N07 C06 SING N N 19
A1AS8 C25 C26 SING N N 20
A1AS8 C25 N05 SING N N 21
A1AS8 C26 N02 SING N N 22
A1AS8 C06 N05 SING N N 23
A1AS8 C06 O24 DOUB N N 24
A1AS8 N05 C04 SING N N 25
A1AS8 N02 C01 SING N N 26
A1AS8 N02 C03 SING N N 27
A1AS8 C01 CD SING N N 28
A1AS8 C04 C03 SING N N 29
A1AS8 CD NE SING N N 30
A1AS8 NH2 CZ DOUB N N 31
A1AS8 NE CZ SING N N 32
A1AS8 CZ NH1 SING N N 33
A1AS8 CD H1 SING N N 34
A1AS8 CD H2 SING N N 35
A1AS8 NE H3 SING N N 36
A1AS8 NH1 H4 SING N N 37
A1AS8 NH1 H5 SING N N 38
A1AS8 NH2 H6 SING N N 39
A1AS8 C01 H7 SING N N 40
A1AS8 C01 H8 SING N N 41
A1AS8 C03 H9 SING N N 42
A1AS8 C03 H10 SING N N 43
A1AS8 C04 H11 SING N N 44
A1AS8 C04 H12 SING N N 45
A1AS8 C08 H13 SING N N 46
A1AS8 C08 H14 SING N N 47
A1AS8 C09 H15 SING N N 48
A1AS8 C14 H16 SING N N 49
A1AS8 C19 H17 SING N N 50
A1AS8 C20 H18 SING N N 51
A1AS8 C21 H19 SING N N 52
A1AS8 C21 H20 SING N N 53
A1AS8 C22 H21 SING N N 54
A1AS8 C22 H22 SING N N 55
A1AS8 C23 H23 SING N N 56
A1AS8 C23 H24 SING N N 57
A1AS8 C25 H25 SING N N 58
A1AS8 C25 H26 SING N N 59
A1AS8 C26 H27 SING N N 60
A1AS8 C26 H28 SING N N 61
A1AS8 N12 H30 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AS8 SMILES ACDLabs 12.01 "Clc1ccc(cc1F)NC(=O)C1CCCN(C1)C(=O)N1CCN(CCNC(=N)N)CC1"
A1AS8 InChI InChI 1.06 "InChI=1S/C20H29ClFN7O2/c21-16-4-3-15(12-17(16)22)26-18(30)14-2-1-6-29(13-14)20(31)28-10-8-27(9-11-28)7-5-25-19(23)24/h3-4,12,14H,1-2,5-11,13H2,(H,26,30)(H4,23,24,25)/t14-/m0/s1"
A1AS8 InChIKey InChI 1.06 FUFZIHQUAXSDER-AWEZNQCLSA-N
A1AS8 SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCN1CCN(CC1)C(=O)N2CCC[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3"
A1AS8 SMILES CACTVS 3.385 "NC(=N)NCCN1CCN(CC1)C(=O)N2CCC[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3"
A1AS8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCN1CCN(CC1)C(=O)N2CCC[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl"
A1AS8 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CCCN(C2)C(=O)N3CCN(CC3)CCNC(=N)N)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AS8 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-1-[4-(2-carbamimidamidoethyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
A1AS8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-1-[4-(2-carbamimidamidoethyl)piperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)piperidine-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AS8 "Create component" 2024-05-28 RCSB
A1AS8 "Initial release" 2025-04-02 RCSB
#