data_A1AT1 # _chem_comp.id A1AT1 _chem_comp.name "(1aR,7aS)-1a-methyl-7a-[(2E,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1a,7a-dihydronaphtho[2,3-b]oxirene-2,7-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H40 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "menaquinone-4 epoxide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-06-02 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.648 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AT1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9BUX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AT1 C01 C1 C 0 1 N N N N N N 97.546 121.077 100.587 -9.847 0.924 1.200 C01 A1AT1 1 A1AT1 C02 C2 C 0 1 N N N N N N 96.974 119.792 101.188 -10.451 -0.040 0.212 C02 A1AT1 2 A1AT1 C03 C3 C 0 1 N N N N N N 97.370 119.238 102.361 -9.691 -0.627 -0.679 C03 A1AT1 3 A1AT1 C04 C4 C 0 1 N N N N N N 96.933 117.906 103.108 -8.213 -0.339 -0.716 C04 A1AT1 4 A1AT1 C05 C5 C 0 1 N N N N N N 97.507 117.380 104.510 -7.434 -1.652 -0.615 C05 A1AT1 5 A1AT1 C06 C6 C 0 1 N N N N N N 99.022 117.283 104.999 -5.955 -1.363 -0.652 C06 A1AT1 6 A1AT1 C07 C7 C 0 1 N N N N N N 100.008 116.648 104.368 -5.284 -1.242 0.466 C07 A1AT1 7 A1AT1 C08 C8 C 0 1 N N N N N N 101.476 116.539 104.860 -3.836 -0.826 0.433 C08 A1AT1 8 A1AT1 C09 C9 C 0 1 N N N N N N 101.939 115.155 104.353 -3.633 0.388 1.343 C09 A1AT1 9 A1AT1 C10 C10 C 0 1 N N N N N N 103.351 114.605 104.611 -2.185 0.804 1.310 C10 A1AT1 10 A1AT1 C11 C11 C 0 1 N N N N N N 104.384 115.054 103.998 -1.793 1.747 0.489 C11 A1AT1 11 A1AT1 C12 C12 C 0 1 N N N N N N 105.781 114.476 104.276 -0.327 2.073 0.362 C12 A1AT1 12 A1AT1 C13 C13 C 0 1 N N N N N N 106.808 115.249 103.407 0.087 1.998 -1.109 C13 A1AT1 13 A1AT1 C14 C14 C 0 1 N N N N N N 107.968 115.946 104.073 1.553 2.325 -1.236 C14 A1AT1 14 A1AT1 C15 C15 C 0 1 N N N N N N 108.930 115.407 104.804 2.439 1.361 -1.262 C15 A1AT1 15 A1AT1 C16 C16 C 0 1 N N N N N N 110.158 116.057 105.536 3.909 1.687 -1.227 C16 A1AT1 16 A1AT1 C17 C17 C 0 1 N N S N N N 110.424 116.241 107.103 4.567 0.955 -0.055 C17 A1AT1 17 A1AT1 C18 C18 C 0 1 N N N N N N 110.204 117.646 107.411 4.042 -0.438 0.252 C18 A1AT1 18 A1AT1 O19 O1 O 0 1 N N N N N N 110.135 118.449 106.593 2.926 -0.610 0.693 O19 A1AT1 19 A1AT1 C20 C19 C 0 1 Y N N N N N 110.187 118.159 108.844 4.951 -1.573 -0.012 C20 A1AT1 20 A1AT1 C21 C20 C 0 1 Y N N N N N 110.219 119.546 109.021 4.480 -2.794 -0.474 C21 A1AT1 21 A1AT1 C22 C21 C 0 1 Y N N N N N 110.236 119.983 110.298 5.373 -3.827 -0.704 C22 A1AT1 22 A1AT1 C23 C22 C 0 1 Y N N N N N 110.249 119.149 111.363 6.727 -3.653 -0.478 C23 A1AT1 23 A1AT1 C24 C23 C 0 1 Y N N N N N 110.228 117.818 111.202 7.215 -2.441 -0.017 C24 A1AT1 24 A1AT1 C25 C24 C 0 1 Y N N N N N 110.198 117.314 109.931 6.336 -1.394 0.219 C25 A1AT1 25 A1AT1 C26 C25 C 0 1 N N N N N N 110.178 115.810 109.719 6.803 -0.081 0.710 C26 A1AT1 26 A1AT1 O27 O2 O 0 1 N N N N N N 109.943 115.145 110.696 7.727 0.011 1.489 O27 A1AT1 27 A1AT1 C28 C26 C 0 1 N N R N N N 110.453 115.336 108.286 6.068 1.175 0.214 C28 A1AT1 28 A1AT1 O29 O3 O 0 1 N N N N N N 111.352 115.138 107.214 5.047 1.719 1.053 O29 A1AT1 29 A1AT1 C30 C27 C 0 1 N N N N N N 109.364 114.260 108.062 6.859 2.104 -0.710 C30 A1AT1 30 A1AT1 C31 C28 C 0 1 N N N N N N 107.908 117.362 103.778 1.999 3.761 -1.333 C31 A1AT1 31 A1AT1 C32 C29 C 0 1 N N N N N N 103.674 113.451 105.485 -1.188 0.136 2.222 C32 A1AT1 32 A1AT1 C33 C30 C 0 1 N N N N N N 99.492 117.904 106.307 -5.250 -1.215 -1.975 C33 A1AT1 33 A1AT1 C34 C31 C 0 1 N N N N N N 95.885 119.211 100.305 -11.930 -0.329 0.249 C34 A1AT1 34 A1AT1 H1 H1 H 0 1 N N N N N N 98.331 121.474 101.248 -9.383 1.752 0.663 H1 A1AT1 35 A1AT1 H2 H2 H 0 1 N N N N N N 97.975 120.860 99.598 -10.627 1.309 1.856 H2 A1AT1 36 A1AT1 H3 H3 H 0 1 N N N N N N 96.743 121.822 100.483 -9.093 0.409 1.795 H3 A1AT1 37 A1AT1 H4 H4 H 0 1 N N N N N N 98.123 119.809 102.885 -10.125 -1.319 -1.387 H4 A1AT1 38 A1AT1 H5 H5 H 0 1 N N N N N N 95.848 118.003 103.259 -7.963 0.160 -1.653 H5 A1AT1 39 A1AT1 H6 H6 H 0 1 N N N N N N 97.133 117.095 102.392 -7.947 0.306 0.121 H6 A1AT1 40 A1AT1 H7 H7 H 0 1 N N N N N N 97.016 118.015 105.262 -7.683 -2.151 0.322 H7 A1AT1 41 A1AT1 H8 H8 H 0 1 N N N N N N 97.126 116.352 104.593 -7.700 -2.297 -1.452 H8 A1AT1 42 A1AT1 H9 H9 H 0 1 N N N N N N 99.765 116.167 103.432 -5.767 -1.440 1.411 H9 A1AT1 43 A1AT1 H10 H10 H 0 1 N N N N N N 101.525 116.590 105.958 -3.213 -1.649 0.783 H10 A1AT1 44 A1AT1 H11 H11 H 0 1 N N N N N N 102.094 117.340 104.428 -3.555 -0.566 -0.587 H11 A1AT1 45 A1AT1 H12 H12 H 0 1 N N N N N N 101.815 115.174 103.260 -4.256 1.212 0.993 H12 A1AT1 46 A1AT1 H13 H13 H 0 1 N N N N N N 101.243 114.423 104.788 -3.914 0.128 2.363 H13 A1AT1 47 A1AT1 H14 H14 H 0 1 N N N N N N 104.271 115.849 103.276 -2.519 2.289 -0.097 H14 A1AT1 48 A1AT1 H15 H15 H 0 1 N N N N N N 105.801 113.408 104.014 -0.145 3.079 0.740 H15 A1AT1 49 A1AT1 H16 H16 H 0 1 N N N N N N 106.029 114.597 105.341 0.256 1.356 0.940 H16 A1AT1 50 A1AT1 H17 H17 H 0 1 N N N N N N 106.247 116.018 102.856 -0.095 0.993 -1.487 H17 A1AT1 51 A1AT1 H18 H18 H 0 1 N N N N N N 107.234 114.526 102.696 -0.496 2.715 -1.687 H18 A1AT1 52 A1AT1 H19 H19 H 0 1 N N N N N N 108.858 114.335 104.917 2.115 0.331 -1.308 H19 A1AT1 53 A1AT1 H20 H20 H 0 1 N N N N N N 111.024 115.479 105.179 4.374 1.371 -2.160 H20 A1AT1 54 A1AT1 H21 H21 H 0 1 N N N N N N 110.207 117.078 105.130 4.040 2.762 -1.102 H21 A1AT1 55 A1AT1 H22 H22 H 0 1 N N N N N N 110.230 120.228 108.184 3.424 -2.937 -0.652 H22 A1AT1 56 A1AT1 H23 H23 H 0 1 N N N N N N 110.239 121.048 110.478 5.009 -4.778 -1.064 H23 A1AT1 57 A1AT1 H24 H24 H 0 1 N N N N N N 110.277 119.562 112.360 7.409 -4.469 -0.663 H24 A1AT1 58 A1AT1 H25 H25 H 0 1 N N N N N N 110.235 117.158 112.057 8.274 -2.312 0.158 H25 A1AT1 59 A1AT1 H26 H26 H 0 1 N N N N N N 109.351 113.567 108.916 6.425 3.104 -0.676 H26 A1AT1 60 A1AT1 H27 H27 H 0 1 N N N N N N 108.382 114.746 107.969 7.897 2.147 -0.380 H27 A1AT1 61 A1AT1 H28 H28 H 0 1 N N N N N N 109.585 113.701 107.141 6.816 1.724 -1.730 H28 A1AT1 62 A1AT1 H29 H29 H 0 1 N N N N N N 108.753 117.874 104.262 2.280 4.122 -0.343 H29 A1AT1 63 A1AT1 H30 H30 H 0 1 N N N N N N 107.963 117.512 102.690 2.856 3.831 -2.002 H30 A1AT1 64 A1AT1 H31 H31 H 0 1 N N N N N N 106.962 117.776 104.158 1.183 4.370 -1.723 H31 A1AT1 65 A1AT1 H32 H32 H 0 1 N N N N N N 102.759 113.103 105.987 -0.691 -0.673 1.687 H32 A1AT1 66 A1AT1 H33 H33 H 0 1 N N N N N N 104.091 112.635 104.876 -0.447 0.866 2.547 H33 A1AT1 67 A1AT1 H34 H34 H 0 1 N N N N N N 104.412 113.759 106.240 -1.706 -0.268 3.092 H34 A1AT1 68 A1AT1 H35 H35 H 0 1 N N N N N N 98.649 118.417 106.794 -5.191 -0.159 -2.239 H35 A1AT1 69 A1AT1 H36 H36 H 0 1 N N N N N N 99.874 117.115 106.971 -4.243 -1.626 -1.898 H36 A1AT1 70 A1AT1 H37 H37 H 0 1 N N N N N N 100.293 118.629 106.101 -5.804 -1.751 -2.745 H37 A1AT1 71 A1AT1 H38 H38 H 0 1 N N N N N N 95.494 118.290 100.762 -12.454 0.377 -0.396 H38 A1AT1 72 A1AT1 H39 H39 H 0 1 N N N N N N 95.070 119.942 100.199 -12.111 -1.345 -0.101 H39 A1AT1 73 A1AT1 H40 H40 H 0 1 N N N N N N 96.301 118.980 99.313 -12.295 -0.227 1.271 H40 A1AT1 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AT1 C34 C02 SING N N 1 A1AT1 C01 C02 SING N N 2 A1AT1 C02 C03 DOUB N N 3 A1AT1 C03 C04 SING N N 4 A1AT1 C04 C05 SING N N 5 A1AT1 C13 C14 SING N N 6 A1AT1 C13 C12 SING N N 7 A1AT1 C31 C14 SING N N 8 A1AT1 C11 C12 SING N N 9 A1AT1 C11 C10 DOUB N E 10 A1AT1 C14 C15 DOUB N E 11 A1AT1 C09 C10 SING N N 12 A1AT1 C09 C08 SING N N 13 A1AT1 C07 C08 SING N N 14 A1AT1 C07 C06 DOUB N E 15 A1AT1 C05 C06 SING N N 16 A1AT1 C10 C32 SING N N 17 A1AT1 C15 C16 SING N N 18 A1AT1 C06 C33 SING N N 19 A1AT1 C16 C17 SING N N 20 A1AT1 O19 C18 DOUB N N 21 A1AT1 C17 O29 SING N N 22 A1AT1 C17 C18 SING N N 23 A1AT1 C17 C28 SING N N 24 A1AT1 O29 C28 SING N N 25 A1AT1 C18 C20 SING N N 26 A1AT1 C30 C28 SING N N 27 A1AT1 C28 C26 SING N N 28 A1AT1 C20 C21 DOUB Y N 29 A1AT1 C20 C25 SING Y N 30 A1AT1 C21 C22 SING Y N 31 A1AT1 C26 C25 SING N N 32 A1AT1 C26 O27 DOUB N N 33 A1AT1 C25 C24 DOUB Y N 34 A1AT1 C22 C23 DOUB Y N 35 A1AT1 C24 C23 SING Y N 36 A1AT1 C01 H1 SING N N 37 A1AT1 C01 H2 SING N N 38 A1AT1 C01 H3 SING N N 39 A1AT1 C03 H4 SING N N 40 A1AT1 C04 H5 SING N N 41 A1AT1 C04 H6 SING N N 42 A1AT1 C05 H7 SING N N 43 A1AT1 C05 H8 SING N N 44 A1AT1 C07 H9 SING N N 45 A1AT1 C08 H10 SING N N 46 A1AT1 C08 H11 SING N N 47 A1AT1 C09 H12 SING N N 48 A1AT1 C09 H13 SING N N 49 A1AT1 C11 H14 SING N N 50 A1AT1 C12 H15 SING N N 51 A1AT1 C12 H16 SING N N 52 A1AT1 C13 H17 SING N N 53 A1AT1 C13 H18 SING N N 54 A1AT1 C15 H19 SING N N 55 A1AT1 C16 H20 SING N N 56 A1AT1 C16 H21 SING N N 57 A1AT1 C21 H22 SING N N 58 A1AT1 C22 H23 SING N N 59 A1AT1 C23 H24 SING N N 60 A1AT1 C24 H25 SING N N 61 A1AT1 C30 H26 SING N N 62 A1AT1 C30 H27 SING N N 63 A1AT1 C30 H28 SING N N 64 A1AT1 C31 H29 SING N N 65 A1AT1 C31 H30 SING N N 66 A1AT1 C31 H31 SING N N 67 A1AT1 C32 H32 SING N N 68 A1AT1 C32 H33 SING N N 69 A1AT1 C32 H34 SING N N 70 A1AT1 C33 H35 SING N N 71 A1AT1 C33 H36 SING N N 72 A1AT1 C33 H37 SING N N 73 A1AT1 C34 H38 SING N N 74 A1AT1 C34 H39 SING N N 75 A1AT1 C34 H40 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AT1 SMILES ACDLabs 12.01 "C/C(C)=C\CCC(\C)=C\CCC(\C)=C\CCC(\C)=C\CC12OC2(C)C(=O)c2ccccc2C1=O" A1AT1 InChI InChI 1.06 "InChI=1S/C31H40O3/c1-22(2)12-9-13-23(3)14-10-15-24(4)16-11-17-25(5)20-21-31-29(33)27-19-8-7-18-26(27)28(32)30(31,6)34-31/h7-8,12,14,16,18-20H,9-11,13,15,17,21H2,1-6H3/b23-14+,24-16+,25-20+/t30-,31+/m0/s1" A1AT1 InChIKey InChI 1.06 TUZHANAISKEZFG-YNKDMHFFSA-N A1AT1 SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCC/C(C)=C/CC/C(C)=C/CC\C(C)=C\C[C@]12O[C@@]1(C)C(=O)c3ccccc3C2=O" A1AT1 SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CC[C]12O[C]1(C)C(=O)c3ccccc3C2=O" A1AT1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/CC/C(=C/CC/C(=C/C[C@@]12C(=O)c3ccccc3C(=O)[C@@]1(O2)C)/C)/C)/C)C" A1AT1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CCCC(=CCCC(=CCC12C(=O)c3ccccc3C(=O)C1(O2)C)C)C)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AT1 "SYSTEMATIC NAME" ACDLabs 12.01 "(1aR,7aS)-1a-methyl-7a-[(2E,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]-1a,7a-dihydronaphtho[2,3-b]oxirene-2,7-dione" A1AT1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{a}~{S},7~{a}~{R})-7~{a}-methyl-1~{a}-[(2~{E},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenyl]naphtho[2,3-b]oxirene-2,7-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AT1 "Create component" 2024-06-02 RCSB A1AT1 "Initial release" 2025-01-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1AT1 _pdbx_chem_comp_synonyms.name "menaquinone-4 epoxide" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #