data_A1ATA
#
_chem_comp.id A1ATA
_chem_comp.name "(3S)-1-[4-(5-carbamimidamidopentanoyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H31 Cl F N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-05-28
_chem_comp.pdbx_modified_date 2025-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 507.989
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1ATA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9BXG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1ATA C10 C1 C 0 1 N N N N N N -4.464 -16.211 13.619 3.940 0.974 0.417 C10 A1ATA 1
A1ATA CG C2 C 0 1 N N S N N N -3.304 -10.673 6.380 -6.420 0.301 -0.811 CG A1ATA 2
A1ATA ND1 N1 N 0 1 N N N N N N -3.005 -9.123 5.811 -7.870 0.059 -0.926 ND1 A1ATA 3
A1ATA CD2 C3 C 0 1 N N N N N N -3.449 -11.510 5.377 -6.301 1.752 -0.283 CD2 A1ATA 4
A1ATA CE1 C4 C 0 1 N N N N N N -3.708 -10.584 4.137 -7.470 2.451 -1.025 CE1 A1ATA 5
A1ATA CE2 C5 C 0 1 N N N N N N -2.984 -9.205 4.512 -8.553 1.352 -1.076 CE2 A1ATA 6
A1ATA CZ C6 C 0 1 N N N N N N -2.812 -7.894 6.627 -8.482 -1.172 -0.898 CZ A1ATA 7
A1ATA NH1 N2 N 0 1 N N N N N N -2.858 -7.918 7.889 -7.767 -2.252 -0.760 NH1 A1ATA 8
A1ATA NH2 N3 N 0 1 N N N N N N -2.612 -6.818 6.037 -9.849 -1.263 -1.016 NH2 A1ATA 9
A1ATA C01 C7 C 0 1 N N N N N N -2.058 -11.115 7.065 -5.804 -0.666 0.167 C01 A1ATA 10
A1ATA C03 C8 C 0 1 N N N N N N -0.692 -12.379 8.657 -3.852 -1.773 1.145 C03 A1ATA 11
A1ATA C04 C9 C 0 1 N N N N N N -0.696 -12.773 10.120 -2.803 -1.018 1.972 C04 A1ATA 12
A1ATA C06 C10 C 0 1 N N N N N N -1.358 -15.213 10.420 -0.598 -0.435 1.083 C06 A1ATA 13
A1ATA C08 C11 C 0 1 N N N N N N -3.855 -16.389 10.866 1.609 0.151 0.201 C08 A1ATA 14
A1ATA C09 C12 C 0 1 N N S N N N -3.568 -16.395 12.386 2.512 1.216 0.831 C09 A1ATA 15
A1ATA C13 C13 C 0 1 Y N N N N N -4.437 -15.856 16.257 5.837 -0.455 0.264 C13 A1ATA 16
A1ATA C14 C14 C 0 1 Y N N N N N -5.823 -15.822 16.317 6.764 0.574 0.164 C14 A1ATA 17
A1ATA C15 C15 C 0 1 Y N N N N N -6.455 -15.651 17.533 8.043 0.308 -0.290 C15 A1ATA 18
A1ATA C17 C16 C 0 1 Y N N N N N -5.714 -15.508 18.684 8.398 -0.984 -0.646 C17 A1ATA 19
A1ATA C19 C17 C 0 1 Y N N N N N -4.320 -15.543 18.629 7.475 -2.009 -0.547 C19 A1ATA 20
A1ATA C20 C18 C 0 1 Y N N N N N -3.691 -15.719 17.416 6.197 -1.748 -0.093 C20 A1ATA 21
A1ATA C21 C19 C 0 1 N N N N N N -2.931 -17.737 12.850 2.070 2.602 0.353 C21 A1ATA 22
A1ATA C22 C20 C 0 1 N N N N N N -1.656 -18.176 12.193 0.630 2.862 0.801 C22 A1ATA 23
A1ATA C23 C21 C 0 1 N N N N N N -1.755 -17.756 10.723 -0.294 1.816 0.170 C23 A1ATA 24
A1ATA C25 C22 C 0 1 N N N N N N -3.000 -13.118 10.380 -2.550 0.673 0.106 C25 A1ATA 25
A1ATA C26 C23 C 0 1 N N N N N N -3.184 -12.713 8.857 -3.598 -0.083 -0.720 C26 A1ATA 26
A1ATA F16 F1 F 0 1 N N N N N N -7.801 -15.617 17.585 8.946 1.308 -0.389 F16 A1ATA 27
A1ATA N02 N4 N 0 1 N N N N N N -2.036 -12.076 8.174 -4.467 -0.834 0.196 N02 A1ATA 28
A1ATA N05 N5 N 0 1 N N N N N N -1.717 -13.773 10.350 -1.935 -0.266 1.055 N05 A1ATA 29
A1ATA N07 N6 N 0 1 N N N N N N -2.324 -16.357 10.607 0.209 0.477 0.506 N07 A1ATA 30
A1ATA N12 N7 N 0 1 N N N N N N -3.754 -16.041 14.971 4.544 -0.190 0.729 N12 A1ATA 31
A1ATA O11 O1 O 0 1 N N N N N N -5.603 -16.213 13.491 4.545 1.824 -0.201 O11 A1ATA 32
A1ATA O24 O2 O 0 1 N N N N N N -0.187 -15.484 10.305 -0.120 -1.411 1.630 O24 A1ATA 33
A1ATA O27 O3 O 0 1 N N N N N N -1.029 -10.706 6.655 -6.510 -1.292 0.928 O27 A1ATA 34
A1ATA CL1 CL1 CL 0 0 N N N N N N -6.545 -15.280 20.260 10.004 -1.315 -1.217 CL1 A1ATA 35
A1ATA H1 H1 H 0 1 N N N N N N -4.156 -10.641 7.075 -5.941 0.211 -1.786 H1 A1ATA 36
A1ATA H4 H4 H 0 1 N N N N N N -2.537 -12.108 5.233 -6.446 1.788 0.797 H4 A1ATA 37
A1ATA H5 H5 H 0 1 N N N N N N -4.304 -12.180 5.549 -5.343 2.191 -0.562 H5 A1ATA 38
A1ATA H6 H6 H 0 1 N N N N N N -3.269 -11.020 3.227 -7.823 3.315 -0.462 H6 A1ATA 39
A1ATA H7 H7 H 0 1 N N N N N N -4.786 -10.429 3.985 -7.169 2.742 -2.032 H7 A1ATA 40
A1ATA H8 H8 H 0 1 N N N N N N -3.526 -8.357 4.068 -9.073 1.388 -2.033 H8 A1ATA 41
A1ATA H9 H9 H 0 1 N N N N N N -1.946 -9.208 4.147 -9.263 1.494 -0.261 H9 A1ATA 42
A1ATA H10 H10 H 0 1 N N N N N N -2.719 -7.011 8.286 -8.198 -3.121 -0.740 H10 A1ATA 43
A1ATA H11 H11 H 0 1 N N N N N N -2.488 -5.976 6.562 -10.381 -0.458 -1.119 H11 A1ATA 44
A1ATA H12 H12 H 0 1 N N N N N N -2.575 -6.795 5.038 -10.281 -2.131 -0.996 H12 A1ATA 45
A1ATA H13 H13 H 0 1 N N N N N N -0.059 -11.489 8.530 -3.371 -2.584 0.597 H13 A1ATA 46
A1ATA H14 H14 H 0 1 N N N N N N -0.280 -13.210 8.066 -4.617 -2.178 1.807 H14 A1ATA 47
A1ATA H15 H15 H 0 1 N N N N N N 0.287 -13.185 10.391 -3.302 -0.328 2.652 H15 A1ATA 48
A1ATA H16 H16 H 0 1 N N N N N N -0.906 -11.887 10.737 -2.205 -1.729 2.542 H16 A1ATA 49
A1ATA H17 H17 H 0 1 N N N N N N -4.358 -17.294 10.496 1.754 0.141 -0.880 H17 A1ATA 50
A1ATA H18 H18 H 0 1 N N N N N N -4.394 -15.498 10.510 1.855 -0.827 0.613 H18 A1ATA 51
A1ATA H19 H19 H 0 1 N N N N N N -2.765 -15.654 12.516 2.434 1.164 1.917 H19 A1ATA 52
A1ATA H20 H20 H 0 1 N N N N N N -6.406 -15.929 15.414 6.487 1.580 0.441 H20 A1ATA 53
A1ATA H21 H21 H 0 1 N N N N N N -3.738 -15.433 19.532 7.754 -3.015 -0.824 H21 A1ATA 54
A1ATA H22 H22 H 0 1 N N N N N N -2.612 -15.750 17.369 5.477 -2.550 -0.016 H22 A1ATA 55
A1ATA H23 H23 H 0 1 N N N N N N -2.730 -17.648 13.928 2.726 3.359 0.780 H23 A1ATA 56
A1ATA H24 H24 H 0 1 N N N N N N -3.676 -18.528 12.680 2.125 2.645 -0.735 H24 A1ATA 57
A1ATA H25 H25 H 0 1 N N N N N N -0.795 -17.686 12.671 0.569 2.794 1.887 H25 A1ATA 58
A1ATA H26 H26 H 0 1 N N N N N N -1.546 -19.268 12.269 0.324 3.858 0.480 H26 A1ATA 59
A1ATA H27 H27 H 0 1 N N N N N N -0.752 -17.777 10.272 -1.304 1.936 0.563 H27 A1ATA 60
A1ATA H28 H28 H 0 1 N N N N N N -2.411 -18.459 10.189 -0.304 1.942 -0.912 H28 A1ATA 61
A1ATA H29 H29 H 0 1 N N N N N N -2.984 -12.232 11.032 -1.785 1.078 -0.555 H29 A1ATA 62
A1ATA H30 H30 H 0 1 N N N N N N -3.794 -13.804 10.712 -3.030 1.483 0.654 H30 A1ATA 63
A1ATA H31 H31 H 0 1 N N N N N N -3.431 -13.629 8.300 -4.196 0.629 -1.290 H31 A1ATA 64
A1ATA H32 H32 H 0 1 N N N N N N -4.030 -12.012 8.803 -3.099 -0.773 -1.401 H32 A1ATA 65
A1ATA H33 H33 H 0 1 N N N N N N -2.754 -16.058 14.975 4.082 -0.845 1.276 H33 A1ATA 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1ATA C10 C09 SING N N 1
A1ATA C10 N12 SING N N 2
A1ATA C10 O11 DOUB N N 3
A1ATA CG CD2 SING N N 4
A1ATA CG C01 SING N N 5
A1ATA ND1 CE2 SING N N 6
A1ATA ND1 CZ SING N N 7
A1ATA CD2 CE1 SING N N 8
A1ATA CE1 CE2 SING N N 9
A1ATA CZ NH1 DOUB N N 10
A1ATA CZ NH2 SING N N 11
A1ATA C01 N02 SING N N 12
A1ATA C01 O27 DOUB N N 13
A1ATA C03 C04 SING N N 14
A1ATA C03 N02 SING N N 15
A1ATA C04 N05 SING N N 16
A1ATA C06 N05 SING N N 17
A1ATA C06 N07 SING N N 18
A1ATA C06 O24 DOUB N N 19
A1ATA C08 C09 SING N N 20
A1ATA C08 N07 SING N N 21
A1ATA C09 C21 SING N N 22
A1ATA C13 C14 DOUB Y N 23
A1ATA C13 C20 SING Y N 24
A1ATA C13 N12 SING N N 25
A1ATA C14 C15 SING Y N 26
A1ATA C15 C17 DOUB Y N 27
A1ATA C15 F16 SING N N 28
A1ATA C17 C19 SING Y N 29
A1ATA C17 CL1 SING N N 30
A1ATA C19 C20 DOUB Y N 31
A1ATA C21 C22 SING N N 32
A1ATA C22 C23 SING N N 33
A1ATA C23 N07 SING N N 34
A1ATA C25 C26 SING N N 35
A1ATA C25 N05 SING N N 36
A1ATA C26 N02 SING N N 37
A1ATA CG H1 SING N N 38
A1ATA CD2 H4 SING N N 39
A1ATA CD2 H5 SING N N 40
A1ATA CE1 H6 SING N N 41
A1ATA CE1 H7 SING N N 42
A1ATA CE2 H8 SING N N 43
A1ATA CE2 H9 SING N N 44
A1ATA NH1 H10 SING N N 45
A1ATA NH2 H11 SING N N 46
A1ATA NH2 H12 SING N N 47
A1ATA C03 H13 SING N N 48
A1ATA C03 H14 SING N N 49
A1ATA C04 H15 SING N N 50
A1ATA C04 H16 SING N N 51
A1ATA C08 H17 SING N N 52
A1ATA C08 H18 SING N N 53
A1ATA C09 H19 SING N N 54
A1ATA C14 H20 SING N N 55
A1ATA C19 H21 SING N N 56
A1ATA C20 H22 SING N N 57
A1ATA C21 H23 SING N N 58
A1ATA C21 H24 SING N N 59
A1ATA C22 H25 SING N N 60
A1ATA C22 H26 SING N N 61
A1ATA C23 H27 SING N N 62
A1ATA C23 H28 SING N N 63
A1ATA C25 H29 SING N N 64
A1ATA C25 H30 SING N N 65
A1ATA C26 H31 SING N N 66
A1ATA C26 H32 SING N N 67
A1ATA N12 H33 SING N N 68
A1ATA ND1 CG SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1ATA SMILES ACDLabs 12.01 "O=C(N1CCCC(C1)C(=O)Nc1ccc(Cl)c(F)c1)N1CCN(CC1)C(=O)C1CCCN1C(=N)N"
A1ATA InChI InChI 1.06 "InChI=1S/C23H31ClFN7O3/c24-17-6-5-16(13-18(17)25)28-20(33)15-3-1-7-31(14-15)23(35)30-11-9-29(10-12-30)21(34)19-4-2-8-32(19)22(26)27/h5-6,13,15,19H,1-4,7-12,14H2,(H3,26,27)(H,28,33)/t15-,19-/m0/s1"
A1ATA InChIKey InChI 1.06 KRLGKLPZGXGHSI-KXBFYZLASA-N
A1ATA SMILES_CANONICAL CACTVS 3.385 "NC(=N)N1CCC[C@H]1C(=O)N2CCN(CC2)C(=O)N3CCC[C@@H](C3)C(=O)Nc4ccc(Cl)c(F)c4"
A1ATA SMILES CACTVS 3.385 "NC(=N)N1CCC[CH]1C(=O)N2CCN(CC2)C(=O)N3CCC[CH](C3)C(=O)Nc4ccc(Cl)c(F)c4"
A1ATA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N1CCC[C@H]1C(=O)N2CCN(CC2)C(=O)N3CCC[C@@H](C3)C(=O)Nc4ccc(c(c4)F)Cl"
A1ATA SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CCCN(C2)C(=O)N3CCN(CC3)C(=O)C4CCCN4C(=N)N)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1ATA "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-1-[4-(1-carbamimidoyl-L-prolyl)piperazine-1-carbonyl]-N-(4-chloro-3-fluorophenyl)piperidine-3-carboxamide"
A1ATA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-1-[4-[(2~{S})-1-carbamimidoylpyrrolidin-2-yl]carbonylpiperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)piperidine-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1ATA "Create component" 2024-05-28 RCSB
A1ATA "Modify value order" 2024-05-29 RCSB
A1ATA "Initial release" 2025-04-02 RCSB
#